Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A86 F1 I1 R1
|
15 |
50.6 |
3276358 |
95.9% |
3142027 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC JC |
REL606 |
3,013,368 |
IS150 (–) +3 bp |
intergenic (+32/‑50) |
ECB_02814 → / → ECB_02815 |
conserved hypothetical protein/Capsule polysaccharide export inner‑membrane protein kpsE |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
= 2775877 | NA (NA) | 62 (1.220) |
51/150 |
0.1 |
96.8% |
noncoding (1/1443 nt) |
IS150 |
repeat region |
| ? | REL606 |
3013368 = |
2 (0.040) | intergenic (+32/‑52) |
ECB_02814/ECB_02815 |
conserved hypothetical protein/Capsule polysaccharide export inner‑membrane protein kpsE |
| * |
? |
REL606 |
= 3013370 | 2 (0.040) | 57 (1.150) |
44/146 |
0.1 |
96.5% |
intergenic (+34/‑50) |
ECB_02814/ECB_02815 |
conserved hypothetical protein/Capsule polysaccharide export inner‑membrane protein kpsE |
| ? | REL606 |
= 3894996 |
NA (NA) | noncoding (1443/1443 nt) |
IS150 |
repeat region |
TTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2775803‑2775877
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CATTGAGTTTGCGCCCCACTGAAACTTTGATAATCGTTACATGTTGATAAAAGTGAAGTCTGCCGTATCCTGG > REL606/3013368‑3013440
TTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAC < 1:245967/76‑1
TTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACA > 2:784321/1‑76
TCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACAT < 1:232425/76‑1
TCAAAAGGGCATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACAT < 1:1315752/76‑1
AAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACATTG < 1:1628966/76‑1
AAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACATTGAG < 1:353903/76‑1
GGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACATTGAGTTT > 2:807352/1‑76
GGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACATTGAGTTT > 2:944198/1‑76
TATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACATTGAGTTTac > 2:1037827/1‑74
TTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACATTGAGTTTGCGC > 1:179677/1‑76
TTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACATTGAGTTTGCGCC > 2:1512647/1‑76
TTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACATTGAGTTTGCGCCC > 2:500766/1‑76
GGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACATTGAGTTTGCGCCCCA > 1:1565343/1‑76
GCTTTGACAGATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACATTGAGTTTGCGCCCCAC < 2:1137525/76‑1
CTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACATTGAGTTTGCGCCCCACT > 1:292593/1‑76
TTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACATTGAGTTTGCGCCCCACTG < 1:1028285/76‑1
TTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACATTGAGTTTGCGCCCCACTGA > 1:540228/1‑76
TGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACATTGAGTTTGCGCCCCACTGAA < 2:479418/76‑1
ACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACATTGAGTTTGCGCCCCACTGAAAC > 1:201169/1‑76
ACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACATTGAGTTTGCGCCCCACTGAAAC < 2:264782/76‑1
CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACATTGAGTTTGCGCCCCACTGAAACT > 2:927549/1‑76
ATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACATTGAGTTTGCGCCCCACTGAAACTT < 2:368223/76‑1
TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACATTGAGTTTGCGCCCCACTGAAACTTT > 2:902509/1‑76
TAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACATTGAGTTTGCGCCCCACTGAAACTTTGAT > 1:441051/1‑76
AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACATTGAGTTTGCGCCCCACTGAAACTTTGATA < 2:1251849/76‑1
AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACATTGAGTTTGCGCCCCACTGAAACTTTGATA < 1:1368895/76‑1
AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACATTGAGTTTGCGCCCCACTGAAACTTTGATA > 1:220989/1‑76
CTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACATTGAGTTTGCGCCCCACTGAAACTTTGATAATCGT > 2:971134/1‑76
TATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACATTGAGTTTGCGCCCCACTGAAACTTTGATAATCGTT < 1:1260629/76‑1
ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACATTGAGTTTGCGCCCCACTGGAACTTTGATAATCGTTA > 2:1536285/1‑76
ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACATTGAGTTTGCGCCCCACTGAAACTTTGATAATCGTTA > 1:859396/1‑76
ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACATTGAGTTTGCGCCCCACTGAAACTTTGATAATCGTTA > 1:859387/1‑76
ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACATTGAGTTTGCGCCCCACTGAAACTTTGATAATCGTTA > 2:1164155/1‑76
ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACATTGAGTTTGCGCCCCACTGAAACTTTGATAATCGTTA > 2:1553265/1‑76
TTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACATTGAGTTTGCGCCCCACTGAAACTTTGATAATCGTTAC > 1:1137191/1‑76
CATTTCATCGTCCAACAAAATGGGTGCAGTACACATTGAGTTTGCGCCCCACTGAAACTTTGATAATCGTTACATG > 1:1305788/1‑76
CATTTCATCGTCCAACAAAATGGGTGCAGTACACATTGAGTTTGCGCCCCACTGAAACTTTGATAATCGTTACATG < 2:1434208/76‑1
CATGTCATCGTCCAACAAAATGGGTGCAGTACACATTGAGTTTGCGCCCCACTGAAACTTTGATAATCGTTACATG < 2:1434216/76‑1
ATTTCATCGTCCAACAAAATGGGTGCAGTACACATTGAGTTTGCTCCCCACTGAAACTTTGATAATCGTTACATGT > 1:791825/1‑76
TTTCATCGTCCAATAAAATGGGTGCAGTACACATTGAGTTTGCGCCCCACTGAAACTTTGATAATCGTTACATGTT > 1:531605/1‑76
TTCATCGTCCAACAAAATGGGTGCAGTACACATTGAGTTTGCGCCCCACTGAAACTTTGATAATCGTTACATGTTG < 1:740357/76‑1
TTCATCGTCCAACAAAATGGGTGCAGTACACATTGAGTTTGCGCCCCACTGAAACTTTGATAATCGTTACATGTTG < 2:249646/76‑1
CATCGTCCAACAAAATGGGTGCAGTACACATTGAGTTTGCGCCCCACTGAAACTTTGATAATCGTTACATGTTGAT < 1:780586/76‑1
ATCGTCCAACAAAATGGGTGCAGTACACATTGAGTTTGCGCCCCACTGAAACTTTGATAATCGTTACATGTTGATA < 2:994390/76‑1
TCGTCCAACAAAATGGGTGCAGTACACATTGAGTTTGCGCCCCACTGAAACTTTGATAATCGTTACATGTTGATAA < 2:248922/76‑1
TCCAACAAAATGGGTGCAGTACACATTGAGTTTGCGCCCCACTGAAACTTTGATAATCGTTACATGTTGATAAAAG > 2:1252644/1‑76
CCAACAAAATGGGTGCAGTACACATTGAGTTTGCGCCCCACTGAAACTTTGATAATCGTTACATGTTGATAAAAGT < 1:169873/76‑1
AACAAAATGGGTGCAGTACACATTGAGTTTGCGCCCCACTGAAACTTTGATAATCGTTACATGTTGATAAAAGTGA < 1:1158891/76‑1
AACAAAATGGGTGCAGTACACATTGAGTTTGCGCCCCACTGAAACTTTGATAATCGTTACATGTTGATAAAAGTGA > 2:586653/1‑76
ACAAAATGGGTGCAGTACACATTGAGTTTGCGCCCCACTGAAACTTTGATAATCGTTACATGTTGATAAAAGTGAA < 1:983275/76‑1
CAAAATGGGTGCAGTACACATTGAGTTTGCGCCCCACTGAAACTTTGATAATCGTTACATGTTGATAAAAGTGAAG < 1:1459250/76‑1
AAAATGGGTGCAGTACACATTGAGTTTGCGCCCCACTGAAACTTTGATAATCGTTACATGTTGATAAAAGTGAAGT > 2:1103342/1‑76
AATGGGTGCAGTACACATTGAGTTTGCGCCCCACTGAAACTTTGATAATCGTTACATGTTGATAAAAGTGAAGTCT > 1:771893/1‑76
ATGGGTGCAGTACACATTGAGTTTGCGCCCCACTGAAACTTTGATAATCGTTACATGTTGATAAAAGTGAAGTCTG < 2:226486/76‑1
ATGGGTGCAGTACACATTGAGTTTGCGCCCCACTGAAACTTTGATAATCGTTACATGTTGATAAAAGTGAAGTCTG < 1:1281338/76‑1
ATGGGTGCAGTACACATTGAGTTTGCGCCCCACTGAAACTTTGATAATCGTTACATGTAGATAAAAGTGAAGTCTG > 2:806002/1‑76
TGGGTGCAGTACACATTGAGTTTGCGCCCCACTGAAACTTTGATAATCGTTACATGTTGATAAAAGTGAAGTCTGC > 2:779390/1‑76
TGGGTGCAGTACACATTGAGTTTGCGCCCCACTGAAACTTTGATAATCGTTACATGTTGATAAAAGTGAAGTCTGC < 2:1340088/76‑1
AGTACACATTGAGTTTGCGCCCCACTGAAACTTTGATAATCGTTACATGTTGATAAAAGTGAAGTCTGCCGTATCC > 1:699588/1‑76
TACACATTGAGTTTGCGCCCCACTGAAACTTTGATAATCGTTACATGTTGATAAAAGTGAAGTCTGCCGTATCCTG < 1:991714/76‑1
TACACATTGAGTTTGCGCCCCACTGAAACTTTGATAATCGTTACATGTTGATAAAAGTGAAGTCTGCCGTATCCTG < 2:1014501/76‑1
ACACATTGAGTTTGCGCCCCACTGAAACTTTGATAATCGTTACATGTTGATAAAAGTGAAGTCTGCCGTATCCTGG < 1:395270/76‑1
TTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2775803‑2775877
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CATTGAGTTTGCGCCCCACTGAAACTTTGATAATCGTTACATGTTGATAAAAGTGAAGTCTGCCGTATCCTGG > REL606/3013368‑3013440
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
