Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A41 F1 I1 R1
|
21 |
57.1 |
3643130 |
97.0% |
3533836 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
REL606 |
2,103,918 |
(CCAG)7→8 |
coding (185/216 nt) |
ECB_01992 → |
hypothetical protein |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
= 2103887 | 0 (0.000) | 41 (0.760)
+CAGC |
20/80 |
0.4 |
100% |
coding (154/216 nt) |
ECB_01992 |
hypothetical protein |
| ? | REL606 |
2103888 = |
0 (0.000) | coding (155/216 nt) |
ECB_01992 |
hypothetical protein |
AAACATGGCTATACAATGAAAACTGCTTCGTTATTGACTTCGAATATAAAGGGGTGAAATTTGCATTAGATTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2103813‑2103887
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGGTGTGAATGTGGATTTTGTACTACGAAATAATTGCCCTTATTA > REL606/2103888‑2103961
||||
AAACATGGCTATACAATGAAAACTGCTTCGTTATTGACTTCGAATATAAAGGGGTGAAATTTGCATTAGATTTCAC < 1:177333/76‑1
AAACATGGCTATACAATGAAAACTGCTTCGTTATTGACTTCGAATATAAAGGGGTGAAATTTGCATTAGATTTCAC < 1:1504373/76‑1
AACATGGCTATACAATGAAAACTGCTTCGTTATTGACTTCGAATATAAAGGGGTGAAATTTGCATTAGATTTCACA < 1:419797/76‑1
AACATGGCTATACAATGAAAACTGCTTCGTTATTGACTTCGAATATAAAGGGGTGAAATTTGCATTAGATTTCACA < 1:419792/76‑1
ATGGCTATACAATGAAAACTGCTTCGTTATTGACTTCGAATATAAAGGGGTGAAATTTGCATTAGATTTCACAGCC < 1:872922/76‑1
TGGCTATACAATGAAAACTGCTTCGTTATTGACTTCGAATATAAAGGGGTGAAATTTGCATTAGATTTCACAGCCA < 1:1820097/76‑1
GGCTATACAATGAAAACTGCTTCATTATTGACTTCGAATATAAAGGGGTGAAATTTGCATTAGATTTCACAGCCAG < 1:597736/76‑1
CTATACAATGAAAACTGCTTCGTTATTGACTTCGAATATAAAGGGGTGAAATTTGCATTAGATTTCACAGCCAGCC > 1:341774/1‑76
ATACAATGAAAACTGCTTCGTTATTGACTTCGAATATAAAGGGGTGAAATTTGCATTAGATTTCACAGCCAGCCAG > 1:1443204/1‑76
ACAATGAAAACTGCTTCGTTATTGACTTCGAATATAAAGGGGTGAAATTTGCATTAGATTTCACAGCCAGCCAGCC < 1:1681237/76‑1
ACAATGAAAACTGCTTCGTTATTGACTTCGAATATAAAGGGGTGAAATTTGCATTAGATTTCACAGCCAGCCAGCC > 2:279067/1‑76
CAATGAAAACTGCTTCGTTATTGACTTCGAATATAAAGGGGTGAAATTTGCATTAGATTTCACAGCCAGCCAGCCA < 1:1349816/76‑1
TGAAAACTGCTTCGTTATTGACTTCGAATATAAAGGGGTGAAATTTGCATTAGATTTCACAGCCAGCCAGCCAGCC < 2:761635/76‑1
GAAAACTGCTTCGTTATTGACTTCGAATATAAAGGGGTGAAATTTGCATTAGATTTCACAGCCAGCCAGCCAGCCA > 2:1216833/1‑76
AAACTGCTTCGTTATTGACTTCGAATATAAAGGGGTGAAATTTGCATTAGATTTCACAGCCAGCCAGCCAGCCAGC < 1:1341332/76‑1
AACTGCTTCGTTATTGACTTCGAATATAAAGGGGTGAAATTTGCATTAGATTTCACAGCCAGCCAGCCAGCCAGCC < 1:1345809/76‑1
ACTGCTTCGTTATTGACTTCGAATATAAAGGGGTGAAATTTGCATTAGATTTCACAGCCAGCCAGCCAGCCAGCCA < 1:1385124/76‑1
ACTGCTTCGTTATTGACTTCGAATATAAAGGGGTGAAATTTGCATTAGATTTCACAGCCAGCCAGCCAGCCAGCCA < 1:279067/76‑1
ACTGCTTCGTTATTGACTTCGAATATAAAGGGGTGAAATTTGCATTAGATTTCACAGCCAGCCAGCCAGCCAGCCA < 2:1424257/76‑1
ACTGCTTCGTTATTGACTTCGAATATAAAGGGGTGAAATTTGCATTAGATTTCACAGCCAGCCAGCCAGCCAGCCA < 1:687903/76‑1
ACTGCTTCCTGATTTACTTCGAATATAAAGGGGGGAAATTTGCATTAGATTGCACAGCCAGCCAGCCAGCCAGCCA < 2:1424252/76‑1
GCTTCGTTATTGACTTCGAATATAAAGGGGTGAAATTTGCATTAGATTTCACAGCCAGCCAGCCAGCCAGCCAGCC < 1:796735/76‑1
GCTTCGTTATTGACTTCGAATATAAAGGGGTGAAATTTGCATTAGATTTCACAGCCAGCCAGCCAGCCAGCCAGCC > 2:232338/1‑76
GCTTCGTTATTGACTTCGAATATAAAGGGGTGAAATTTGCATTAGATTTCACAGCCAGCCAGCCAGCCAGCCAGCC > 2:1485067/1‑76
GCTTCGTTATTGACTTCGAATATAAAGGGGTGAAATTTGCATTAGATTTCACAGCCAGCCAGCCAGCCAGCCAGCC > 2:1554057/1‑76
CTTCGTTATTGACTTCGAATATAAAGGGGTGAAATTTGCATTAGATTTCACAGCCAGCCAGCCAGCCAGCCAGCCA > 1:982967/1‑76
CTTCGTTATTGACTTCGAATATAAAGGGGTGAAATTTGCATTAGATTTCACAGCCAGCCAGCCAGCCAGCCAGCCA < 1:1349706/76‑1
TTCGTTATTGACTTCGAATATAAAGGGGTGAAATTTGCATTAGATTTCACAGCCAGCCACCCAGCCAGCCAGCCAG < 1:1739996/76‑1
TTCGTTATTGACTTCGAATATAAAGGGGTAAAATTTGCATTAGATTTCACGGCCAGCCAGCCAGCCAGCCAGCCAG < 1:500680/76‑1
GTTATTGACTTCGAATATAAAGGGGTGAAATTTGCATTAGATTTCACAGCCAGCCAGCCAGCCAGCCAGCCAGCCA < 2:1327612/76‑1
GTTATTGACTTCGAATATAAAGGGGTGAAATTTGCATTAGATTTCACAGCCAGCCAGCCAGCCAGCCAGCCAGCCA < 2:914099/76‑1
GTTATTGACTTCGAATATAAAGGGGTGAAATTTGCATTAGATTTCACAGCCAGCCAGCCAGCCAGCCAGCCAGCCA < 2:889664/76‑1
ATTGACTTCGAATATAAAGGGGTGAAATTTGCATTAGATTTCACAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCC < 2:468060/76‑1
TGACTTCGAATATAAAGGGGTGAAATTTGCATTAGATTTCACAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAG < 1:95149/76‑1
GACTTCGAATATAAAGGGGTGAAATTTGCATTAGATTTCACAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGG > 1:54765/1‑76
ACTTCGAATATAAAGGGGTGAANTTTGCATTAGATTTCACAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGGT > 2:249818/1‑76
ACTTCGAATATAAAGGGGTGAAATTTGCATTAGATTTCACAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGGT > 2:351550/1‑76
ACTTCGAATATAAAGGGGTGAAATTTGCATTAGATTTCACAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGGT > 2:1771210/1‑76
CGAATATAAAGGGGTGAAATTTGCATTAGATTTCACAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGGTGTGA > 2:186882/1‑76
GAATATAAAGGGGTGAAATTTGCATTAGATTTCACAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGGTGTGAA > 2:653132/1‑76
ATATAAAGGGGTGAAATTTGCATTAGATTTCACAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGGTGTGAATG > 1:548185/1‑76
AAAGGGGTGAAATTTGCATTAGATTTCACAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGGTGTGAATGTGGt > 2:774137/1‑75
AAAGGGGTGAAATTTGCATTAGATTTCACAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGGTGTGAATGTGGA > 2:1178228/1‑76
AAAGGGGTGAAATTTGCATTAGATTTCACAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGGTGTGAATGTGGA > 2:1357898/1‑76
AAGGGGTGAATTTTGCATTAGATATAACAGCCAGCCAGCCACCCAGCCAGCCAGCCAGCCAGGTGTGAATGTGGAT < 1:296615/76‑1
AAGGGGTGAAATTTGCATTAGATTTCACAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGGTGTGAATGTGGAT < 1:106323/76‑1
AGGGGTGAAATTTGCATTAGATTTCACAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGGTGTGAATGTGGATT < 2:60667/76‑1
GGTGAAATTTGCATTAGATTTCACAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGGTGTGAATGTGGATTTTG < 2:888849/76‑1
GTGAAATTTGCATTAGATTTCACAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGGTGTGAGTGTGGATTTTGT > 2:108804/1‑76
GTGAAATTTGCATTAGATTTCACAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGGTGTGAATGTGGATTTTGT > 1:309711/1‑76
GAAATTTGCATTAGATTTCACAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGGTGTGAATGTGGATTTTGTAC < 1:1313490/76‑1
ATTTGCATTAGATTTCACAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGGTGTGAATGTGGATTTTGTACTAC > 2:478234/1‑76
TTTGCATTAGATTTCACAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGGTGTGAATGTGGATTTTGTACTACG > 1:1006638/1‑76
TTTCCATAAGATTCCCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGGTGTGAATGTGGATTTTGTACTACG < 2:1079112/76‑1
TGCATTAGATTTCACAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGGTGTGAATGTGGATTTTGTACTACGAA < 1:307585/76‑1
ATTAGATTTCACAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGGTGTGAATGTGGATTTTGTACTACGAAATA > 1:531453/1‑76
TTAGATTTCACAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGGTGTGAATGTGGATTTTGTACTACGAAATAA > 2:1002042/1‑76
CACAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGGTGTGAATGTGGATTTTGTACTACGAAATAATTGCCCTT < 1:52729/76‑1
CACAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGGTGTGAATGTGGATTTTGTACTACGAAATAATTGCCCTT < 1:373635/76‑1
CACAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGGTGTGAATGTGGATTTTGTACTACGAAATAATTGCCCTT < 2:914692/76‑1
CAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGGTGTGAATGTGGATTTTGTACTACGAAATAATTGCCCTTAT > 2:374938/1‑76
GCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGGTGTGAATGTGGATTTTGTACTACGAAATAATTGCCCTTATTA < 1:1304252/76‑1
||||
AAACATGGCTATACAATGAAAACTGCTTCGTTATTGACTTCGAATATAAAGGGGTGAAATTTGCATTAGATTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2103813‑2103887
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGGTGTGAATGTGGATTTTGTACTACGAAATAATTGCCCTTATTA > REL606/2103888‑2103961
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
