Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A91 F1 I1 R1
|
18 |
55.4 |
3661525 |
95.1% |
3482110 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
REL606 |
2,103,918 |
(CCAG)7→8 |
coding (185/216 nt) |
ECB_01992 → |
hypothetical protein |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
2103888 = | 2 (0.040) | 25 (0.700) |
19/96 |
0.8 |
97.5% |
coding (155/216 nt) |
ECB_01992 |
hypothetical protein |
| ? | REL606 |
= 2103891 |
0 (0.000) | coding (158/216 nt) |
ECB_01992 |
hypothetical protein |
TCTTTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2103988‑2103888
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggctggctggctggctggctggctgGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAG < REL606/2103891‑2103821
TCTTTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCT > 2:1067379/1‑76
CTTTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTG > 2:1689086/1‑76
TTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGC < 1:1574121/76‑1
gTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTG > 1:958348/2‑76
TTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGG < 2:1243427/76‑1
GTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGC > 2:1076372/1‑76
TGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTG < 2:1201693/76‑1
GTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCT < 2:1139782/76‑1
GTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGATGGCT > 2:1804120/1‑76
TATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTG < 1:713485/76‑1
TAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTTGCCAGGTGGCTGGt > 2:1405967/1‑75
AAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTG < 1:1710446/76‑1
AAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTG < 1:435518/76‑1
AAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCGGTG > 2:1203679/1‑76
GGCAAATATTTCGTAGTACAAAATCCACATTCACTCCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAA < 2:1430754/76‑1
AATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATtt > 2:862598/1‑74
AATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCT < 2:239914/76‑1
ATTATTTCGTAGTTCAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTA < 1:89469/76‑1
ATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTA < 1:1528119/76‑1
TTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAA > 1:64356/1‑76
TTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAA > 1:573682/1‑76
ATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGATGGCTGGCTGTGAAATCTAATG > 2:514928/1‑76
TTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGC > 2:488681/1‑76
TTTCGTAGTACAAAAGCCACAGTCACGCCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCGAATGC < 1:883500/76‑1
TTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCA < 2:501885/76‑1
TTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCA < 2:748170/76‑1
CGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAAAGCAAA > 2:1185997/1‑76
nAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGGAAATTTAATGCAAATTTCACC > 1:1673266/2‑76
CAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACC > 2:1213055/1‑76
AAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCC > 2:352540/1‑76
TCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTT < 1:637644/76‑1
TCCACATTCACACCTGGCTGGCTGGATGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTT < 1:833929/76‑1
CCACATTCACACCTGGCTGGCTGGCTGGCTGGATGGCTGGCTGGCTGTGAAATATAATGCAAATTTCACCCCTTTA > 1:1023042/1‑76
CACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTAT > 1:1092056/1‑76
TTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTC < 1:192101/76‑1
CTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAA > 2:798133/1‑76
GGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACG > 2:1112588/1‑76
GGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGC < 2:801534/76‑1
GGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGC > 2:1025518/1‑76
GCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCTCCCCTTTATATTCGAAGTCAATAACGAAGCAGTTT < 2:1660243/76‑1
TGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTC > 1:1270010/1‑76
TGGCTGGCTGGCTGGCTGTGAAATATAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTC > 1:1512450/1‑76
CTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATT < 1:1385078/76‑1
GGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGT > 2:1797594/1‑76
GGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGT > 2:150751/1‑76
GGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGT > 2:862233/1‑76
CTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTAT < 1:57499/76‑1
TGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATA > 2:430209/1‑76
TGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATA < 1:76303/76‑1
GGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAG > 2:50078/1‑76
TCTTTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2103988‑2103888
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggctggctggctggctggctggctgGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAG < REL606/2103891‑2103821
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
