Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A69 F1 I1 R1
|
20 |
59.3 |
3764421 |
95.9% |
3610079 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
REL606 |
3,339,054 |
Δ5 bp |
coding (884‑888/966 nt) |
yhdG → |
tRNA‑dihydrouridine synthase B |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
= 3339053 | 1 (0.020) | 73 (1.240) |
49/150 |
0.1 |
98.7% |
coding (883/966 nt) |
yhdG |
tRNA‑dihydrouridine synthase B |
| ? | REL606 |
3339059 = |
1 (0.020) | coding (889/966 nt) |
yhdG |
tRNA‑dihydrouridine synthase B |
GTCCGGCAAAAGGGTACCGAATTGCACGTAAACACGTTTCCTGGTATCTCCAGGAACACGCTCCAAATGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3338982‑3339053
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGCGCACATTCAACGCCATTGAGGATGCCAGCGAACAGCTGGAGGCGTTGGAGGCATACTTCGAAAATTTTGCG > REL606/3339059‑3339133
GTCCGGCAAAAGGGTACCGAATTGCACGTAAACACGTTTCCTGGTATCTCCAGGAACACGCTCCAAATGACCCGGC > 1:1455137/1‑76
GGCAAAAGGGTACCGAATTGCACGTAAACACGTTTCCTGGTATCTCCAGGAACACGCTCCAAATGACCCGGCGCAC < 2:1848847/76‑1
CAAAAGGGTACCGAATTGCACGTAAACACGTTTCCTGGTATCTCCAGGAACACGCTCCAAATGACCCGGCGCACAT > 2:898963/1‑76
CAAAAGGGTACCGAATTGCACGTAAACACGTTTCCTGGTATCTCCAGGAACACGCTCCAAATGACCCGGCGCACAT > 2:528187/1‑76
CAAAAGGGTACCGAATTGCACGTAAACACGTTTCCTGGTATCTCCAGGAACACGCTCCAAATGACCCGGCGCACAT < 2:485960/76‑1
CAAAAGGGTACCGAATTGCACGTAAACACGTTTCCTGGTATCTCCAGGAACACGCTCCAAATGACCCGGCGCACAT > 1:1795641/1‑76
AAAAGGGTACCGAATTGCACGTAAACACGTTTCCTGGTATCTCCAGGAACACGCTCCAAATGACCCGGCGCACATT < 2:1455137/76‑1
aagGGGTACCGAATTGCCGGTAACCACGTTTCCGGGTATCTCCAGGAACACGCTCCAAATGACCCGGCGCACATTC < 1:922617/73‑1
AAAGGGTCCCGAATGGCATGTAAACCCATTTGCTGGTATCCCCAGGAACACGCTCCAAATGACCCGGCGCACATTC < 1:1168185/76‑1
AAAGGGTACCGAATTGCACGTAAACACGTTTCCTGGTATCTCCAGGAACACGCTCCAAATGACCCGGCGCACATTC < 1:1336682/76‑1
AAGGGTACCGAATTGCACGTAAACACGTTTCCTGGTATCTCCAGGAACACGCTCCAAATGACCCGGCGCACATTCA > 2:490780/1‑76
AGGGTACCGAATCGCACGTAAACACGTTTCCTGGTATCTCCAGGAACACGCTCCAAATGACCCGGCGCACATTCAA < 1:1375356/76‑1
GGGTACCGAATTGCACGTAAACACGTTTCCTGGTATCTCCAGGAACACGCTCCAAATGACCCGGCGCACATTCAAC < 1:462336/76‑1
GGTACCGAATTGCACGTAAACACGTTTCCTGGTATCTCCAGGAACACGCTCCAAATGACCCGGCGCACATTCAACG < 2:657787/76‑1
GGTACCGAATTGCACGTAAACACGTTTCCTGGTATCTCCAGGAACACGCTCCAAATGACCCGGCGCACATTCAACG < 2:1251728/76‑1
TACCGAATTGCACGTAAACACGTTTCCTGGTATCTCCAGGAACACGCTCCAAATGACCCGGCGCACATTCAACGCC < 2:578514/76‑1
CCGAATTGCACGTAAACACGTTTCCTGGTATCTCCAGGAACACGCTCCAAATGACCCGGCGCACATTCAACGCCAT > 1:1791613/1‑76
CGAATTGCACGTAAACACGTTTCCTGGTATCTCCAGGAACACGCTCCAAATGACCCGGCGCACATTCAACGCCATT > 2:1320417/1‑76
GAATTGCACGTAAACACGTTTCCTGGTATCTCCAGGAACACGCTCCAAATGACCCGGCGCACATTCAACGCCATTG > 1:1081368/1‑76
AATTGCACGTAAACACGTTTCCTGGTATCTCCAGGAACACGCTCCAAATGACCCGGCGCACATTCAACGCCATTGA > 2:1253888/1‑76
TTGCACGTAAACACGTTTCCTGGTATCTCCAGGAACACGCTCCAAATGACCCGGCGCACATTCAACGCCATTGAGG < 2:313108/76‑1
CACGTAAACACGTTTCCTGGTATCTCCAGGAACACGCTCCAAATGACCCGGCGCACATTCAACGCCATTGAGGATG > 2:764529/1‑76
CGTAAACACGTTTCCTGGTATCTCCAGGAACACGCTCCAAATGACCCGGCGCACATTCAACGCCATTGAGGATGCC < 2:51164/76‑1
GTAAACACGTTTCCTGGTATCTCCAGGAACACGCTCCAAATGACCCGGCGCACATTCAACGCCATTGAGGATGCCA > 1:842632/1‑76
GTAAACACGTTTCCTGGTATCTCCAGGAACACGCTCCAAATGACCCGGCGCACATTCAACGCCATTGAGGATGCCA > 2:1164884/1‑76
TAAACACGTTTCCTGGTATCTCCAGGAACACGCTCCAAATGACCCGGCGCCCATTCACCGCCATTGAGGCTGCCAG > 2:1632978/1‑76
TAAACACGTTTCCTGGTATCTCCAGGAACACGCTCCAAATGACCCGGCGCACATTCAACGCCATTGAGGATGCCAG < 2:1791612/76‑1
AAACACGTTTCCTGGTATCTCCAGGAACACGCTCCAAATGACCCGGCGCACATTCAACGCCATTGAGGGTGCCAGC > 2:1136484/1‑76
AAACACGTTTCCTGGTATCTCCAGGAACACGCTCCAAATGACCCGGCGCACATTCAACGCCATTGAGGGTGCCAGC > 2:1136495/1‑76
AAACACGTTTCCTGGTATCTCCAGGAACACGCTCCAAATGACCCGGCGCACATTCAACGCCATTGAGGATGCCAGC > 2:242715/1‑76
AAACACGTTTCCTGGTATCTCCAGGAACACGCTCCAAATGACCCGGCGCACATTCAACGCCATTGAGGATGCCAGC < 1:395521/76‑1
AAACACGTTTCCTGGTATCTCCAGGAAAACGCTCCAAATGACCCGGCGCACATTCAACGCCATTGAGGATGCCAGC > 2:22196/1‑76
ACACGTTTCCTGGTATCTCCAGGAACACGCTCCAAATGACCCGGCGCACATTCAACGCCATTGAGGATGCCAGCGA < 2:265929/76‑1
CACGTTTCCTGGTATCTCCAGGAACACGCTCCAAATGACCCGGCGCACATTCAACGCCATTGAGGATGCCAGCGAA > 1:554392/1‑76
CACGTTTCCTGGTATCTCCAGGAACACGCTCCAAATGACCCGGCGCACATTCAACGCCATTGAGGATGCCAGCGAA > 2:204206/1‑76
TTCCTGGTAACTCCAGGAACACGCTCCAAATGACCCGGCGCACATTCAACGCCATTGAGGATGCCAGCGAACAGCT < 2:861242/76‑1
TCCTGGTATCTCCAGGAACACGCTCCAAATGACCCGGCGCACATTCAACGCCATTGAGGATGCCAGCGAACAGCTG > 2:720139/1‑76
TCCTGGTATCTCCAGGAACACGCTCCAAATGACCCGGCGCACATTCAACGCCATTGAGGATGCCAGCGAACAGCTG > 2:696658/1‑76
CTGGTATCTCCAGGAACACGCTCCAAATGACCCGGCGCACATTCAACGCCATTGAGGATGCCAGCGAACAGCTGGA < 1:221493/76‑1
TATCTCCAGGAACACGCTCCAAATGACCCGGCGCACATTCAACGCCATTGAGGATGCCAGCGAACAGCTGGAGata > 1:1003127/1‑73
TATCTCCAGGAACACGCTCCAAATGACCCGGCGCACATTCAACGCCATTGAGGATGCCAGCGAACAGCTGGAGata < 2:1003127/76‑4
TATCTCCAGGAACACGCTCCAAATGACCCGGCGCACATTCAACGCCATTGAGGATGCCAGCGAACAGCTGGAGGCG > 1:1297368/1‑76
TATCTCCAGGAACACGCTCCAAATGACCCGGCGCACATTCAACGCCATTGAGGATGCCAGCGAACAGCTGGAGGCG < 2:1282270/76‑1
TATCTCCAGGAACACGCTCCAAATGACCCGGCGCACATTCAACGCCATTGAGGATGCCAGCGAACAGCTGGAGGCG < 1:938187/76‑1
TATCTCCAGGAACACGCTCCAAATGACCCGGCGCACATTCAACGCCATTGAGGATGCCAGCGAACAGCTGGAGGCG > 1:792638/1‑76
CTCGAGGAACACGCTCCAAATGACCTGGCGCGCATTCAACGCCATTGAGGATGCCAGCGAACAGCTGGAGGCGTTG < 2:379090/76‑1
cCCAGGAACACGCTCCAAATGACCCGGCGCACATTCAACGCCATTGAGGATGCCAGCGAACAGCTGGAGGCGTTGG < 2:451806/75‑1
cCCAGGAACACGCTCCAAATGACCCGGCGCACATTCAACGCCATTGAGGATGCCAGCGAACAGCTGGAGGCGTTGG < 1:859606/75‑1
TCCAGGAACACGCTCCAAATGACCCGGCGCACATTCAACGCCATTGAGGATGCCAGCGAACAGCTGGAGGCGTTGG < 2:423954/76‑1
TCCAGGAACACGCTCCAAATGACCCGGCGCACATTCAACGCCATTGAGGATGCCAGCGAACAGCTGGAGGCGTTGG < 2:1501561/76‑1
CCAGGAACACGCTCCAAATGACCCGGCGCACATTCAACGCCATTGAGGATGCCAGCGAACAGCTGGCGGCGTTGGA > 2:151219/1‑76
CAGGAACACGCTCCAAATGACCCGGCGCACATTCAACGCCATTGAGGATGCCAGCGAACAGCTGGAGGCGTTGGAG > 1:1713256/1‑76
CAGGAACACGCTCCAAATGACCCGGCGCACATTCAACGCCATTGAGGATGCCAGCGAACAGCTGGAGGCGTTGGAG < 2:1362839/76‑1
CAGGAACACGCTCAAAATGACCCGGCGCACATTCAACGCCATTGAGGATGCCAGCGAACAGCTGGAGGCGTTGGAG > 1:652569/1‑76
GGAACACGCTCCAAATGACCCGGCGCACATTCAACGCCATTGAGGATGCCAGCGAACAGCTGGAGGCGTTGGAGGg > 2:1445809/1‑75
AACACGCTCCAAATGACCCGGCGCACATTCAACGCCATTGAGGATGCCAGGGAACAGCTGGAGGCGTTGGAGGCAT < 1:254347/76‑1
AACACGCTCCAAATGACCCGGCGCACATTCAACGCCATTGAGGATGCCAGCGAACAGCTGGAGGCGTTGGAGGCAT < 1:1402313/76‑1
AACACGCTCCAAATCACCCGGCGCACATTCAACGCCATTGAGGATGCCAGCGAACAGCTGGAGGCGTTGGAGGCAT < 1:778568/76‑1
ACACGCTCCAAATGACCCGGCGCACATTCAACGCCATTGAGGATGCCAGCGAACAGCTGGAGGCGTTGGAGGCATA > 2:500427/1‑76
CACGCTCCAAATGACCCGGCGCACATTCAACGCCATTGAGGATGCCAGCGAACAGCTGGAGGCGTTGGAGGCATAC < 2:1729063/76‑1
CACGCTCCAAATGACCCGGCGCACATTCAACGCCATTGAGGATGCCAGCGAACAGCTGGAGGCGTTGGAGGCATAC > 2:82691/1‑76
CGCTCCAAATGACCCGGCGCACATTCAACGCCATTGAGGATGCCAGCGAACAGCTGGAGGCGTTGGAGGCATACTT < 2:1717908/76‑1
CTCCAAATGACCCGGCGCACATTCAACGCCATTGAGGATGCCAGCGAACAGCTGGAGGCGTTGGAGGCATACTTCG > 2:1378882/1‑76
CCAAATTACCCGGCGCACATTCAACGCCATTGAGGATGCCAGCGAACAGCTGGAGGCGTTGGAGGCATACTTCGAA < 2:1774730/76‑1
CCAAATGACCCGGCGCACATTCAACGCCATTGAGGATGCCAGCGAACAGCTGGAGGCGTTGGAGGCATACTTCGAA > 2:39079/1‑76
CCAAATGACCCGGCGCACATTCAACGCCATTGAGGATGCCAGCGAACAGCTGGAGGCGTTGGAGGCATACTTCGAA > 2:677805/1‑76
CCAAATGACCCGGCGCACATTCAACGCCATTGAGGATGCCAGCGAACAGCTGGAGGCGTTGGAGGCATACTTCGAA < 1:477140/76‑1
CCAAATGACCCGGCGCACATTCAACGCCATTGAGGATGCCAGCGAACAGCTGGAGGCGTTGGAGGCATACTTCGAA > 1:1273569/1‑76
CAAATGACCCGGCGCACATTCAACGCCATTGAGGATGCCAGCGAACAGCTGGAGGCGTTGGAGGCATACTTCGAAA > 2:1621261/1‑76
CAAATGACCCGGCGCACATTCAACGCCATTGAGGATGCCAGCGAACAGCTGGAGGCGTTGGAGGCATACTTCGAAA < 1:1149245/76‑1
AAATGACCCGGCGCACATTCAACGCCATTGAGGATGCCAGCGAACAGCTGGAGGCGTTGGAGGCATACTTCGAAAA < 2:696247/76‑1
AAATGACCCGGCGCACATTCAACGCCATTGAGGATGCCAGCGAACAGCTGGAGGCGTTGGAGGCATACTTCGAAAA > 2:1654468/1‑76
CCGGCGCACATTCAACGCCATTGAGGATGCCAGCGAACAGCTGGAGGCGTTGGAGGCATACTTCGAAAATTTTGCG > 1:1045350/1‑76
GTCCGGCAAAAGGGTACCGAATTGCACGTAAACACGTTTCCTGGTATCTCCAGGAACACGCTCCAAATGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3338982‑3339053
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGCGCACATTCAACGCCATTGAGGATGCCAGCGAACAGCTGGAGGCGTTGGAGGCATACTTCGAAAATTTTGCG > REL606/3339059‑3339133
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
