Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A14 F1 I1 R1 17 21.6 1356596 98.4% 1334890 76.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC REL606 2,009,951 (GCA)3→2 intergenic (‑81/+23) yeeX ← / ← yeeA hypothetical protein/conserved inner membrane protein

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ REL606 2009944 2009946 3 11 [0] [0] 12 yeeX/yeeA hypothetical protein/conserved inner membrane protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2009947 =0 (0.000)10 (0.510) 10/136 0.9 100% intergenic (‑77/+29) yeeX/yeeA hypothetical protein/conserved inner membrane protein
?REL606 = 2009943 0 (0.000)intergenic (‑73/+33) yeeX/yeeA hypothetical protein/conserved inner membrane protein

GATK/CNVnator alignment

N/A