mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 416,124 | A→G | D207G (GAT→GGT) | ECB_00376 → | hypothetical protein |
| RA | 1,305,498 | A→C | F248V (TTC→GTC) | cls ← | cardiolipin synthetase |
| RA | 1,329,516 | C→T | H33Y (CAC→TAC) | topA → | DNA topoisomerase I |
| JC | 1,733,297 | (CGTATGAA)1→2 | coding (333/1413 nt) | pykF → | pyruvate kinase |
| RA | 1,894,119 | C→A | intergenic (‑8/+89) | proQ ← / ← yebR | putative solute/DNA competence effector/hypothetical protein |
| MC JC | 2,009,951 | (GCA)3→2 | intergenic (‑81/+23) | yeeX ← / ← yeeA | hypothetical protein/conserved inner membrane protein |
| RA | 2,119,652 | T→C | T43T (ACA→ACG) | ECB_02008 ← | putative phage protein |
| RA | 2,193,779 | G→T | L143I (CTT→ATT) | yeiB ← | conserved inner membrane protein |
| JC | 2,236,113 | (TTATCGCCT)2→3 | coding (550/1761 nt) | yejM → | predicted hydrolase, inner membrane |
| RA | 2,237,516 | (T)7→6 | intergenic (+41/+62) | proL → / ← yejO | tRNA‑Pro/predicted autotransporter outer membrane protein |
| RA | 3,499,896 | T→C | E303G (GAG→GGG) | glgC ← | glucose‑1‑phosphate adenylyltransferase |
| RA | 3,762,741 | A→T | K662I (AAA→ATA) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| RA | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| MC JC | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| RA | 3,928,204 | A→G | intergenic (+72/‑13) | rhoL → / → rho | rho operon leader peptide/transcription termination factor Rho |
| RA | 4,202,363 | G→A | T66I (ACA→ATA) | iclR ← | DNA‑binding transcriptional repressor |
| JC JC | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 4347640 = | 27 (1.250) | 22 (1.080) | 20/142 | 0.2 | 43.3% | coding (256/477 nt) | fxsA | inner membrane protein |
| ? | REL606 | = 4356083 | 32 (1.570) | coding (351/537 nt) | blc | outer membrane lipoprotein (lipocalin) | |||||