Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A79 F1 I1 R1
|
19 |
52.0 |
3333102 |
95.7% |
3189778 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
REL606 |
3,928,221 |
(CACTATGAA)1→2 |
coding (5/1260 nt) |
rho → |
transcription termination factor Rho |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
3928213 = | 5 (0.100) | 50 (0.960) |
42/150 |
0.2 |
86.2% |
intergenic (+81/‑4) |
rhoL/rho |
rho operon leader peptide/transcription termination factor Rho |
| ? | REL606 |
= 3928221 |
11 (0.210) | coding (5/1260 nt) |
rho |
transcription termination factor Rho |
CCAGCCCCATATTTTCGCCGAGAGTGATCAGCTCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3928286‑3928213
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGAATGGTATGGCAGGATCATCC < REL606/3928221‑3928147
CCAGCCCCATATTTTCGCCGAGAGTGATCAGCTCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTT < 2:251982/76‑1
CCCCATATTTTCGCCGAGAGTGATCAGCTCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATA > 1:1207145/1‑76
CCCCATATTTTCGCCGAGAGTGATCAGCTCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATA < 2:1370754/76‑1
ATATTTTCGCCGAGAGTGATCAGCTCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGG < 2:397311/76‑1
ATTTTCGCCGAGAGTGATCAGCTCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTG > 1:1275245/1‑76
ATTTTCGCCGAGAGTGATCAGCTCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTG > 1:1504868/1‑76
TTTCGCCGAGAGTGATCAGCTCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTG < 1:261438/76‑1
GCCGAGAGTGATCAGCTCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTT < 1:1127389/76‑1
CGAGAGTGATCAGCTCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCT < 2:247070/76‑1
CGAGAGTGATCAGCTCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCT < 2:1631383/76‑1
TGATCAGCTCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACT > 2:1392690/1‑76
TGATCAGCTCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACT < 1:85690/76‑1
GATCAGCTCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTT < 1:651338/76‑1
ATCAGCTCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTG > 1:536533/1‑76
TCAGCTCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGG > 1:1623991/1‑76
TCAGCTCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGG > 1:171394/1‑76
TCAGCTCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGG < 2:711527/76‑1
CAGCTCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGG > 1:1039950/1‑76
GCTCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGT < 2:1357225/76‑1
CTCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTA < 1:331091/76‑1
TCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAA < 2:1031256/76‑1
GAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATC > 1:1121807/1‑76
CCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGA < 1:1125180/76‑1
CCGGCGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGA > 2:1536179/1‑76
CGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTT < 1:1457971/76‑1
CGTATTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTT > 2:1380049/1‑76
TTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATG < 2:1358169/76‑1
TTCTTTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATG < 1:1113879/76‑1
TTAATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGT > 1:859045/1‑76
AATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGA > 2:883088/1‑76
AATTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGA > 2:426362/1‑76
TTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGAAT > 1:1519513/1‑76
TTCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGAAT > 2:591691/1‑76
TCGGTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGAATG < 1:799117/76‑1
GTAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGAATGGTA < 2:1462405/76‑1
TAAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGAATGGTAT > 2:879118/1‑76
AAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGAATGGTATG > 2:927681/1‑76
AAGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGAATGGTATG > 2:1499504/1‑76
AGATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGAATGGTATGG > 1:1664457/1‑76
GATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGAATGGTATGGC < 1:12583/76‑1
GATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGAATGGTATGGC > 2:60311/1‑76
ATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGAATGGTATGGCA < 2:952434/76‑1
ATTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGAATGGTATGGCA > 1:562070/1‑76
TTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGAATGGTATGGCAG < 2:36975/76‑1
TTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGAATGGTATGGCAG > 2:241626/1‑76
TTCATAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGAATGGTATGGCAG < 2:1050335/76‑1
TAGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGAATGGTATGGCAGGATC < 2:886294/76‑1
AGTGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGAATGGTATGGCAGGGTCA > 2:725884/1‑76
TGTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGAATGGTATGGCAGGATCATC > 1:1048123/1‑76
GTTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGAATGGTATGGCAGGATCATCC < 2:1381567/76‑1
CCAGCCCCATATTTTCGCCGAGAGTGATCAGCTCAGAAACCGGCGTATTCTTTAATTCGGTAAGATTCATAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3928286‑3928213
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCATAGTGGTGTGAGTTCTTAAACTTGGGGTAAATCTCGAACTTAATGTTGTGAATGGTATGGCAGGATCATCC < REL606/3928221‑3928147
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
