Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A142 F1 I1 R1 21 42.6 2691336 96.3% 2591756 76.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC REL606 3,619,789 (GAC)4→3 coding (2309‑2311/2340 nt) yhjN ← regulator of cellulose synthase, cyclic di‑GMP binding

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ REL606 3619780 3619782 3 46 [0] [0] 45 yhjN regulator of cellulose synthase, cyclic di‑GMP binding

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3619783 =0 (0.000)39 (1.050) 35/132 0.1 100% coding (2317/2340 nt) yhjN regulator of cellulose synthase, cyclic di‑GMP binding
?REL606 = 3619779 0 (0.000)coding (2321/2340 nt) yhjN regulator of cellulose synthase, cyclic di‑GMP binding

GATK/CNVnator alignment

N/A