Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A91 F1 I1 R1
|
18 |
55.4 |
3661525 |
95.1% |
3482110 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
REL606 |
4,096,207 |
Δ1,616 bp |
|
[glpK]–glpF |
[glpK], glpF |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
REL606 |
4096207 |
4097822 |
1616 |
67 [2] |
[3] 71 |
[glpK]–glpF |
[glpK],glpF |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
= 4096206 | 2 (0.040) | 64 (1.150) |
50/148 |
0.1 |
96.3% |
coding (499/1509 nt) |
glpK |
glycerol kinase |
| ? | REL606 |
4097823 = |
3 (0.050) | intergenic (‑251/‑175) |
glpF/yiiU |
glycerol facilitator/hypothetical protein |
GATK/CNVnator alignment
N/A
