Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A132 F1 I1 R1
|
21 |
265.3 |
16744490 |
95.4% |
15974243 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
REL606 |
3,145,967 |
+TAT |
coding (104/1842 nt) |
rpoD → |
RNA polymerase sigma factor |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
= 3145964 | 2 (0.010) | 345 (1.390)
+TAT |
123/138 |
0.0 |
99.4% |
coding (101/1842 nt) |
rpoD |
RNA polymerase sigma factor |
| ? | REL606 |
3145965 = |
2 (0.010) | coding (102/1842 nt) |
rpoD |
RNA polymerase sigma factor |
Only 100 of 382 total aligned reads displayed.
GAAACTTCTTGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3145890‑3145964
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGC > REL606/3145965‑3146039
|||
AAACTTCTTGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATA < 2:6094408/76‑1
AACTTCTTGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATAT < 2:4878695/76‑1
AACTTCTTGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATAT < 2:2350509/76‑1
ACTTCTTGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATT > 1:5596009/1‑76
ACTTCTTGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATT < 1:6263989/76‑1
TTCTTGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTAT > 1:3264693/1‑76
TTCTTGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTAT < 2:1426261/76‑1
TCTTGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATC < 1:119074/76‑1
TTGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGT < 1:354883/76‑1
TGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTC > 2:2929993/1‑76
TGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTC < 1:7444833/76‑1
TGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTC > 2:8074513/1‑76
TGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTC > 1:4119383/1‑76
CGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAG > 2:317874/1‑76
CGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAG > 1:426194/1‑76
GTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGA > 2:3119122/1‑76
GTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGA > 1:4701019/1‑76
GGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATC < 2:6571799/76‑1
GGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATC < 2:6826020/76‑1
GTAAGGAGCAAGGCTATCTGACCTGTGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCA < 1:6864909/76‑1
GTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCA > 1:8078382/1‑76
GTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCA < 1:793296/76‑1
GTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCA < 1:1731784/76‑1
GTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCA > 1:3170729/1‑76
AAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGA < 1:3719582/76‑1
AAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGA < 2:7463483/76‑1
GAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCG < 1:7112972/76‑1
AGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGA < 1:876034/76‑1
CAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAG < 2:5272026/76‑1
CAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAG > 2:1006582/1‑76
AAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGA > 2:1737597/1‑76
AAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGA < 1:8111598/76‑1
AGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGAC < 1:7649285/76‑1
GGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACA > 2:2144399/1‑76
GGCTATCTGACATATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACA < 2:8367870/76‑1
GCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACAT > 2:6698970/1‑76
CTATCTTACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATC < 1:6163829/76‑1
CTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATC < 1:5848046/76‑1
TATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCA > 1:1831218/1‑76
ATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCAT > 1:4587657/1‑76
CTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCC < 1:7234237/76‑1
CTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCC > 1:3048771/1‑76
TGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCA < 1:5732808/76‑1
GACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAA < 2:2660242/76‑1
GACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAA < 2:5666241/76‑1
GACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAA > 1:5205060/1‑76
GACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCATCGATTCAGATCAGATCGAAGACATCATCCAA > 2:2830103/1‑76
CCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAAT > 1:3339140/1‑76
CCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAAT < 2:7296521/76‑1
CTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATG > 2:3045265/1‑76
CTATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATG > 2:1921087/1‑76
TATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGCAATCATCCAAATGA > 2:5449704/1‑76
TATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGA > 1:7830313/1‑76
TATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGA > 1:1419825/1‑76
TATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGA > 2:5827959/1‑76
ATGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGAT > 1:5457554/1‑76
TGCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATC < 1:1514112/76‑1
GCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCA < 1:5054510/76‑1
GCCGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCA < 2:3898667/76‑1
CGAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAAC < 2:3561929/76‑1
GAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACG < 2:5215415/76‑1
GAGGTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACG < 1:2899926/76‑1
GTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACA > 2:7616207/1‑76
GTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACA < 1:5312727/76‑1
GTCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACA > 2:6983690/1‑76
TCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACAT < 2:4634477/76‑1
TCAATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACAT < 1:3945257/76‑1
AATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGG < 1:6477826/76‑1
AATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGG > 2:3311157/1‑76
AATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGG < 2:1214241/76‑1
AATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGG > 1:4807905/1‑76
AATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGG > 2:5309825/1‑76
ATGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGG < 1:2170199/76‑1
TGACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGC > 1:2237600/1‑76
ACCATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCAT < 1:4397598/76‑1
ACCATCTGCCAGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCAT < 2:6292662/76‑1
CATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTC > 2:3360216/1‑76
CATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTC < 2:426482/76‑1
CATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTC < 1:311475/76‑1
ATCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCA < 1:6600715/76‑1
TCTGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAG < 1:7305156/76‑1
TGCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGT < 1:1054230/76‑1
GCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTG < 1:2857589/76‑1
GCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTG > 2:1270134/1‑76
GCCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTG < 1:2586182/76‑1
CCGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGA < 2:277484/76‑1
CGGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGAT > 2:1566576/1‑76
GGAAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATG < 1:5385649/76‑1
AAGATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGA > 1:4902451/1‑76
GATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAG < 2:7239597/76‑1
GATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAG > 1:605287/1‑76
ATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGA > 2:4566692/1‑76
ATATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGA > 2:7896791/1‑76
TATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAA > 1:198854/1‑76
ATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAG < 1:3474097/76‑1
ATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAG > 2:1644016/1‑76
ATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAG > 2:4791461/1‑76
ATTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAG > 1:6384213/1‑76
TTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGC > 1:2487925/1‑76
TTATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGC > 2:2869346/1‑76
|||
GAAACTTCTTGTCACCCGTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3145890‑3145964
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TATCGTCGATTCAGATCAGATCGAAGACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGC > REL606/3145965‑3146039
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
