mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 52,039 | C→T | L26F (CTT→TTT) | kefC → | glutathione‑regulated potassium‑efflux system protein |
| RA | 475,296 | Δ1 bp | coding (10/1677 nt) | ybaL ← | predicted transporter with NAD(P)‑binding Rossmann‑fold domain |
| JC JC | 627,132 | IS150 (+) +3 bp | intergenic (‑78/+34) | rna ← / ← citT | ribonuclease I/citrate:succinate antiporter |
| RA | 795,728 | (A)7→6 | coding (602/993 nt) | ECB_00737 ← | hypothetical protein |
| MC JC | 1,297,423 | Δ10,224 bp | [ychE]–[kch] | [ychE], oppA, oppB, oppC, oppD, oppF, yciU, cls, [kch] | |
| RA | 1,329,516 | C→T | H33Y (CAC→TAC) | topA → | DNA topoisomerase I |
| JC | 1,733,297 | (CGTATGAA)1→2 | coding (333/1413 nt) | pykF → | pyruvate kinase |
| RA | 2,131,466 | (A)9→8 | intergenic (‑125/+175) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase |
| RA | 2,193,779 | G→T | L143I (CTT→ATT) | yeiB ← | conserved inner membrane protein |
| RA | 2,815,253 | G→T | S6I (AGC→ATC) | ygdH → | hypothetical protein |
| JC | 3,145,967 | +TAT | coding (104/1842 nt) | rpoD → | RNA polymerase sigma factor |
| RA | 3,495,641 | T→C | T799A (ACT→GCT) | glgP ← | glycogen phosphorylase |
| RA | 3,500,852 | A→G | I641T (ATT→ACT) | glgX ← | glycogen debranching enzyme |
| RA | 3,762,741 | A→T | K662I (AAA→ATA) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| RA | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| MC JC | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| RA | 3,929,292 | A→C | D359A (GAC→GCC) | rho → | transcription termination factor Rho |
| RA | 4,108,360 | T→C | N48S (AAC→AGC) | metJ ← | transcriptional repressor protein MetJ |
| RA | 4,164,603 | T→C | S1250P (TCT→CCT) | rpoB → | DNA‑directed RNA polymerase subunit beta |
| RA | 4,201,918 | C→A | E214D (GAG→GAT) | iclR ← | DNA‑binding transcriptional repressor |
| JC JC | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2651655 = | NA (NA) | 286 (1.120) | 117/148 | 0.1 | NA | noncoding (910/1542 nt) | rrsG | 16S ribosomal RNA |
| ? | REL606 | 2774435 = | NA (NA) | noncoding (1443/1443 nt) | IS150 | repeat region | |||||
| * | ? | REL606 | 3893554 = | NA (NA) | 330 (1.300) | 116/148 | 0.1 | NA | noncoding (1/1443 nt) | IS150 | repeat region |
| ? | REL606 | 3904522 = | NA (NA) | noncoding (908/1542 nt) | rrsC | 16S ribosomal RNA | |||||