Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A97 F1 I1 R1
|
18 |
21.9 |
1431356 |
95.6% |
1368376 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
REL606 |
2,298,759 |
Δ4 bp |
coding (321‑324/1359 nt) |
glpT ← |
sn‑glycerol‑3‑phosphate transporter |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
REL606 |
2298759 |
2298762 |
4 |
13 [0] |
[0] 13 |
glpT |
sn‑glycerol‑3‑phosphate transporter |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
= 2298758 | 0 (0.000) | 13 (0.590) |
11/150 |
0.9 |
100% |
coding (325/1359 nt) |
glpT |
sn‑glycerol‑3‑phosphate transporter |
| ? | REL606 |
2298763 = |
0 (0.000) | coding (320/1359 nt) |
glpT |
sn‑glycerol‑3‑phosphate transporter |
GATK/CNVnator alignment
N/A
