Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A15 F999 I0 R1
|
92 |
59.4 |
4455785 |
96.3% |
4290920 |
49.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,980,957 |
(G)6→7 |
coding (71/1386 nt) |
yifK → |
putative transporter YifK |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,980,951 | 1 | . | G | 100.0%
| 117.9
/ NA
| 30 | L22R (CTG→CGG) | yifK | putative transporter YifK |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (11/19); total (11/19) |
TACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑GGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTA > NC_000913/3980909‑3980995
|
tACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑ggggggg > 1:2301088/1‑49 (MQ=255)
cAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑ggggggg < 1:1749948/48‑2 (MQ=255)
cGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCa > 1:703082/1‑50 (MQ=255)
cGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCa < 1:4432162/50‑1 (MQ=255)
cGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCa < 1:3568635/50‑1 (MQ=255)
gTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCAt > 1:1656811/1‑50 (MQ=255)
tGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCAtt < 1:523250/50‑1 (MQ=255)
tGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCAtt < 1:2202462/50‑1 (MQ=255)
ggCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTg < 1:1463239/49‑1 (MQ=39)
ggAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTc > 1:2957559/1‑50 (MQ=255)
ggAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTc > 1:2297785/1‑50 (MQ=255)
gAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGt < 1:3383546/48‑1 (MQ=255)
gAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCg < 1:1387849/50‑1 (MQ=255)
gAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCg > 1:3612507/1‑50 (MQ=255)
gAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCg > 1:4047756/1‑50 (MQ=255)
aGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGc < 1:4136506/50‑1 (MQ=255)
aGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGc < 1:2011016/50‑1 (MQ=255)
cTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCt < 1:767044/50‑1 (MQ=255)
gACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTg < 1:681457/48‑1 (MQ=39)
gACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGtt < 1:2615796/50‑1 (MQ=255)
gACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGtt > 1:3939572/1‑50 (MQ=255)
aCATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGttt < 1:2910470/50‑1 (MQ=255)
cATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTa < 1:2035970/50‑1 (MQ=255)
gAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATgggg < 1:3446393/49‑1 (MQ=39)
aCTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGgcc > 1:3270890/1‑50 (MQ=255)
aCTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGgcc < 1:2834523/50‑1 (MQ=255)
aCTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGgcc > 1:1850471/1‑50 (MQ=255)
cATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGgccgc > 1:2573173/1‑49 (MQ=39)
aTCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCa < 1:2456330/50‑1 (MQ=255)
aTCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCa < 1:1384605/50‑1 (MQ=255)
gCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGt < 1:2046193/49‑1 (MQ=39)
gCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTa > 1:2153964/1‑50 (MQ=255)
|
TACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑GGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTA > NC_000913/3980909‑3980995
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
