Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A26 F999 I0 R1
|
111 |
30.9 |
2867207 |
97.9% |
2806995 |
48.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,980,957 |
(G)6→7 |
coding (71/1386 nt) |
yifK → |
putative transporter YifK |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,980,951 | 1 | . | G | 100.0%
| 122.6
/ NA
| 32 | L22R (CTG→CGG) | yifK | putative transporter YifK |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (18/14); total (18/14) |
CAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑GGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAG > NC_000913/3980903‑3980993
|
cAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCt < 1:277635/49‑1 (MQ=255)
cAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCt < 1:1639496/49‑1 (MQ=255)
cAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCt > 1:1510066/1‑49 (MQ=255)
agagCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑g > 1:1055537/1‑49 (MQ=255)
agagCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑g > 1:1704901/1‑49 (MQ=255)
agagCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑g > 1:393858/1‑49 (MQ=255)
gagCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑gg > 1:801693/1‑49 (MQ=255)
agCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑ggg < 1:875507/49‑1 (MQ=255)
agCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑ggg > 1:1613107/1‑49 (MQ=255)
gCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑gggg > 1:473154/1‑49 (MQ=255)
tACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑gggggg > 1:2763026/1‑49 (MQ=255)
aCAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑ggggggg > 1:1176891/1‑48 (MQ=255)
cAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑gggggggc < 1:1602837/49‑3 (MQ=255)
cAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑gggggggc < 1:904098/49‑3 (MQ=255)
ggCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCAtt < 1:150951/48‑1 (MQ=39)
ggCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTg < 1:878239/49‑1 (MQ=39)
ggCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTg > 1:2059299/1‑49 (MQ=39)
ggCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTg < 1:2440917/49‑1 (MQ=39)
gCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTgg > 1:935060/1‑49 (MQ=39)
gCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTgg < 1:2726015/49‑1 (MQ=39)
cTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGc > 1:2121839/1‑49 (MQ=255)
cTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGc < 1:193383/49‑1 (MQ=255)
tGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCg > 1:1041010/1‑49 (MQ=255)
aaGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCg > 1:2250481/1‑49 (MQ=39)
aaGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCg < 1:2623024/49‑1 (MQ=39)
aGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCgg > 1:1194713/1‑49 (MQ=39)
gCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGc > 1:2093524/1‑49 (MQ=39)
cTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGcc < 1:2300088/49‑1 (MQ=39)
tCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCt > 1:2205431/1‑49 (MQ=39)
gACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGt < 1:2407004/49‑1 (MQ=39)
gACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGt > 1:1535071/1‑49 (MQ=39)
aCATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGtt > 1:140564/1‑49 (MQ=39)
atCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATg > 1:598065/1‑49 (MQ=39)
atCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATg > 1:1677654/1‑49 (MQ=39)
tCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATg < 1:503130/48‑1 (MQ=39)
gAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATgggg < 1:1569774/49‑1 (MQ=39)
gAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATgggg < 1:835418/49‑1 (MQ=39)
gAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATgggg > 1:2591269/1‑49 (MQ=39)
aaCTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATggggg < 1:805465/49‑1 (MQ=39)
aaCTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATggggg > 1:1068452/1‑49 (MQ=39)
cTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGgcc > 1:1770521/1‑49 (MQ=39)
aTCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGgccgcc < 1:420391/49‑1 (MQ=39)
aTCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGgccgc > 1:439584/1‑48 (MQ=39)
aTCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGgccgc > 1:1380477/1‑48 (MQ=39)
tCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCa < 1:868630/49‑1 (MQ=39)
cGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAg > 1:2725441/1‑49 (MQ=39)
|
CAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑GGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAG > NC_000913/3980903‑3980993
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
