Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F422 I52 R1 239 220.4 11079197 93.2% 10325811 100.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,040,512 A→C G104G (GGT→GGG)  cptA ← toxin of CptAB toxin‑antitoxin pair

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,040,5120AC97.8% 792.3 / 1.6 233G104G (GGT→GGG) cptAtoxin of CptAB toxin‑antitoxin pair
Reads supporting (aligned to +/- strand):  ref base A (3/2);  new base C (111/115);  total (116/117)
Fisher's exact test for biased strand distribution p-value = 6.81e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.85e-01

Only 100 of 233 total aligned reads displayed.

TTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTACCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGCCAACGCAAACGCCCG  >  NC_000913/3040416‑3040608
                                                                                                |                                                                                                
ttatctttGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCg                                                                                               >  1:2626707/1‑100 (MQ=255)
 tatctttGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGc                                                                                              >  2:3939146/1‑100 (MQ=255)
 tatctttGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGc                                                                                              <  2:326872/100‑1 (MQ=255)
  atctttGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTGTCCCGcc                                                                                             >  1:539259/1‑100 (MQ=255)
    ctttGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCAt                                                                                           >  2:4965673/1‑100 (MQ=255)
     tttGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATc                                                                                          >  2:4257855/1‑100 (MQ=255)
         cGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGaa                                                                                      >  2:1742312/1‑100 (MQ=255)
         cGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGaa                                                                                      >  1:483944/1‑100 (MQ=255)
          gTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAAc                                                                                     <  2:478606/100‑1 (MQ=255)
           tctcTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATACTGTCGGCTGCCAGCCATAAACGTTGCCGTTTCCCGCCATCAGAACg                                                                                    <  1:4981888/100‑1 (MQ=255)
            ctctTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGt                                                                                   >  2:2373978/1‑100 (MQ=255)
             tctTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTa                                                                                  >  2:4348662/1‑100 (MQ=255)
                tgttgCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAAc                                                                               <  2:2934371/100‑1 (MQ=255)
                tgttgCAACAAAATCCGCCGTAAATCCCGCCAGTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTTAAc                                                                               <  2:5049454/100‑1 (MQ=255)
                    gCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACgcag                                                                           >  1:73773/1‑100 (MQ=255)
                    gCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACgcag                                                                           >  1:3815224/1‑100 (MQ=255)
                    gCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACgcag                                                                           >  1:4069382/1‑100 (MQ=255)
                     caacaaAATCCGCCGTAAATCCGGCAATTCATCTACCTCCAGGATGTCGGCTTCCAGCCATAAATGTTGCCGGTTACCTCCTTTGGAACGTAAACgcatc                                                                          >  2:1236426/1‑98 (MQ=255)
                     caacaaAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGTCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACgcagc                                                                          >  1:5090869/1‑100 (MQ=255)
                     caacaaAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACgcagc                                                                          <  2:1312377/100‑1 (MQ=255)
                     caacaaAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACgcagc                                                                          <  2:2968970/100‑1 (MQ=255)
                     caacaaAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACgcagc                                                                          <  2:460187/100‑1 (MQ=255)
                      aacaaAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACgcagca                                                                         <  1:5401066/100‑1 (MQ=255)
                       acaaAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGcat                                                                        >  1:1776780/1‑100 (MQ=255)
                         aaaaTCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGTCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGcatca                                                                      <  2:5414440/100‑1 (MQ=255)
                            aTCCGCCGTAAATCCCGACATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGc                                                                   <  1:1944485/100‑1 (MQ=255)
                               cgccgTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGc                                                                >  1:1158127/1‑100 (MQ=255)
                               cgccgTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGc                                                                <  1:3384490/100‑1 (MQ=255)
                                 ccgTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGACGctc                                                              >  1:5270568/1‑100 (MQ=255)
                                  cgTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCAATAAATGTTGCCGCTTCGCGCCATCAGAACGTAAACGCAGCATCATGCCGctct                                                             <  2:5157782/100‑1 (MQ=255)
                                   gTAAATCCCGCCATTCAGCTTCGTGCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCCGCATCATGCCGctcct                                                            >  2:632063/1‑98 (MQ=255)
                                   gTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCtt                                                            >  2:3834022/1‑100 (MQ=255)
                                   gTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCtt                                                            >  2:2881259/1‑100 (MQ=255)
                                   gTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCtt                                                            >  2:2844782/1‑100 (MQ=255)
                                   gTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCtt                                                            <  1:1752512/100‑1 (MQ=255)
                                    tAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTa                                                           >  1:1308204/1‑100 (MQ=255)
                                     aaaTCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTaa                                                          <  1:213515/100‑1 (MQ=255)
                                      aaTCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTaan                                                         <  1:4442407/100‑2 (MQ=255)
                                       aTCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAatc                                                        >  1:2896728/1‑100 (MQ=255)
                                         cccGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAatcat                                                      >  2:2285648/1‑100 (MQ=255)
                                         cccGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAatcat                                                      >  2:2068100/1‑100 (MQ=255)
                                          ccGCCATTCAGCTTCGTCCATTCTGTCGGCTTCTAGCCTTAAATGTTGCCGTTTGCCGCCCTCAGAGCGGAAACGCAGCATCATGCCGCTCGTAatcatc                                                     >  2:1909931/1‑100 (MQ=255)
                                          ccGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCCCTTAatcatc                                                     >  2:3452357/1‑100 (MQ=255)
                                            gCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCa                                                   >  1:997503/1‑100 (MQ=255)
                                             ccATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCAc                                                  <  2:4744270/100‑1 (MQ=255)
                                             ccATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCAc                                                  <  2:1499615/100‑1 (MQ=255)
                                              cATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACg                                                 <  1:2483547/100‑1 (MQ=255)
                                              cATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACg                                                 <  2:4506991/100‑1 (MQ=255)
                                               aTTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTTCCGCCTTCATAACGAAACCGCAGCATCATGCCGCTCTTAATCATCCACgg                                                >  2:5373294/1‑100 (MQ=255)
                                               aTTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACgg                                                <  2:4158737/100‑1 (MQ=255)
                                                ttCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGt                                               >  2:3160795/1‑100 (MQ=255)
                                                    gCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCtt                                           >  2:3353625/1‑100 (MQ=255)
                                                     cTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCttt                                          <  1:3584099/100‑1 (MQ=255)
                                                      ttCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTg                                         >  2:1599707/1‑100 (MQ=255)
                                                       tCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGa                                        <  2:2915955/100‑1 (MQ=255)
                                                        cGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGAc                                       <  1:3858875/100‑1 (MQ=255)
                                                        cGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGAc                                       <  1:2322378/100‑1 (MQ=255)
                                                        cGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGAc                                       >  2:430121/1‑100 (MQ=255)
                                                         gTCCATGCTGTTGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACg                                      >  1:1994498/1‑100 (MQ=255)
                                                         gTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACg                                      <  1:3208520/100‑1 (MQ=255)
                                                         gTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACg                                      <  2:255705/100‑1 (MQ=255)
                                                          tCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGa                                     >  1:3735544/1‑100 (MQ=255)
                                                          tCCATGCTGTCGGCTGCCAGCCATAAATGTTACCGTTTCCCGCAATCAGAACGTAAACACACCCTCATACCGCTCTTTATCATCCACGGTGCTTTGActa                                     >  2:823741/1‑98 (MQ=255)
                                                              tGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCt                                 <  2:2071910/100‑1 (MQ=255)
                                                              tGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCt                                 >  1:4365348/1‑100 (MQ=255)
                                                              tGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCt                                 >  1:171182/1‑100 (MQ=255)
                                                               gCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTc                                >  1:3247558/1‑100 (MQ=255)
                                                                cTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTcc                               <  1:4348840/100‑1 (MQ=255)
                                                                cTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTcc                               <  1:294717/100‑1 (MQ=255)
                                                                cTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTcc                               <  1:5303037/100‑1 (MQ=255)
                                                                  gTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCAc                             >  1:4310575/1‑100 (MQ=255)
                                                                  gTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCAc                             <  2:3652165/100‑1 (MQ=255)
                                                                     ggCTGTCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAGCGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTcc                          <  2:921013/100‑1 (MQ=255)
                                                                     ggCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTcc                          <  1:1048071/100‑1 (MQ=255)
                                                                     ggCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTcc                          <  2:5190134/100‑1 (MQ=255)
                                                                     ggCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTcc                          <  1:2697709/100‑1 (MQ=255)
                                                                     ggCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTcc                          <  1:3025717/100‑1 (MQ=255)
                                                                     ggCTGCCAGCCATAAAGGGTGCCGTTGCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTcc                          <  2:4093822/100‑1 (MQ=255)
                                                                       cTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTg                        <  1:2493628/100‑1 (MQ=255)
                                                                       cTGCCAGCCATAAATGTTGCCGTGTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTGAATCATCCACGGTGCTTTGACGATGCTCCACGCCTg                        >  2:249575/1‑100 (MQ=255)
                                                                         gccagccaTAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGcc                      >  2:3400069/1‑100 (MQ=255)
                                                                         gccagccaTAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGcc                      >  1:4118101/1‑100 (MQ=255)
                                                                          ccagccaTAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGccc                     <  1:4608664/100‑1 (MQ=255)
                                                                           cagccaTAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCt                    >  1:2355636/1‑100 (MQ=255)
                                                                             gccaTAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTg                  <  2:3769515/100‑1 (MQ=255)
                                                                             gccaTAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTg                  <  2:3920736/100‑1 (MQ=255)
                                                                              ccaTAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGc                 >  2:862094/1‑100 (MQ=255)
                                                                               caTAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGcc                <  1:8119/100‑1 (MQ=255)
                                                                               caTAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGcc                <  2:2604109/100‑1 (MQ=255)
                                                                                  aaaTGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGCCGCTGCTCCACTCCTGCCCTTGCCAAc             >  1:1292790/1‑100 (MQ=255)
                                                                                  aaaTGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGCCAAc             <  2:5299803/100‑1 (MQ=255)
                                                                                   taTGGTGCCGTGGCCCGCCATCAGAATGTAAGCGCAGCATCATGCCGCTCTTAATCATCCTCGGTGCTTTGACGGTGCTCCACTCCTGCCCTTGCCAACg            <  2:3007687/99‑1 (MQ=255)
                                                                                   aaTGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGCCAACg            <  1:4647701/100‑1 (MQ=255)
                                                                                   aaTGTTGCCGTGTCCCGCCATAAGAACGTAAGCGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGCCAACg            <  2:5219955/100‑1 (MQ=255)
                                                                                       ttGCCGTTTCCCACCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGCCAACGCaaa        >  2:5293760/1‑100 (MQ=255)
                                                                                        tGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGCCAACGCAAAc       <  1:3994562/100‑1 (MQ=255)
                                                                                         gCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGCCAACGCAAACg      >  1:3302935/1‑100 (MQ=255)
                                                                                         gCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGCCAACGCAAACg      <  1:2412867/100‑1 (MQ=255)
                                                                                         gCCGTTTACCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGCCAACGCAAACg      <  1:970112/100‑1 (MQ=255)
                                                                                            gTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCGCGGTGCTTTGACGATGCTCCACTCCTGCCCTTGCCAACGCAAACGccc   >  1:5524544/1‑100 (MQ=255)
                                                                                                |                                                                                                
TTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTACCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGCCAACGCAAACGCCCG  >  NC_000913/3040416‑3040608

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A