Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F422 I51 R1 223 69.9 1534784 95.1% 1459579 214.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,040,512 A→C G104G (GGT→GGG)  cptA ← toxin of CptAB toxin‑antitoxin pair

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,040,5120AC100.0% 173.3 / NA 52G104G (GGT→GGG) cptAtoxin of CptAB toxin‑antitoxin pair
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base C (35/17);  total (35/17)

ACCAGTATGACCTTAGCGACGAGCGTATTCAGAGCTGGTGCGAGCAAATCCTCAACGAAATGGCAGAGCATTACGCCTGATCTCACTGACGGCTTAGCGCATATGCTTTGCCGT‑CATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTACCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGCCAACGCAAACGCCCGTCCATCAACAAGCGAATTTCCCCCTGGCGAGCATTAATACGCCGCTGGCTGCGAACGCAATCAAACACCACCAGCGAAAGTAACACCATCCATAACGGGGTGTAACTGAGTGGCCAGGGCATGAGTAAAAT  >  NC_000913/3040297‑3040739
                                                                                                                                                                                                                        |                                                                                                                                                                                                                                   
aCCAGTATGACCTTAGCGACGAGCGTATTCAGAGCTGGTGCGAGCAAATCCTCAACGAAATGGCAGAGCATTACGCCTGATCTCACTGACGGCTTAGCGCATATGCTTTGCCGT‑CATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAAc                                                                                                                                                                                                                  >  2:400088/1‑235 (MQ=255)
aCCAGTATGACCTTAGCGACGAGCGTATTCAGAGCTGGTGCGAGCAAATCCTCAACGAAATGGCAGAGCATTACGCCTGATCTCACTGACGGCTTAGCGCATATGCTTTGCCGT‑CATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAAc                                                                                                                                                                                                                  >  1:292489/1‑235 (MQ=255)
     tATGACCTTAGCGACGAGCGTATTCAGAGCTGGTGCGAGCAAATCCTCAACGAAATGGCAGAGCATTACGCCTGATCTCACTGACGGCTTAGCGCATATGCTTTGCCGT‑CATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACgcagca                                                                                                                                                                                                            >  1:595268/1‑236 (MQ=255)
              aGCGACGAGCGTATTCAGAGCTGGTGCGAGCAAATCCTCAACGAAATGGCAGAGCATTACGCCTGATCTCACTGACGGCTTAGCGCATATGCTTTGCCGT‑CATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAACTGTTGCCGTTTCCCGCCATCCGAACGGAAACGACGCATCATGCCGc                                                                                                                                                                                                   >  2:34247/1‑236 (MQ=255)
               gCGACGAGCGTATTCAGAGCTGGTGCGAGCAAATCCTCAACGAAATGGCAGAGCATTACGCCTGATCTCACTGACGGCTTAGCGCATATGCTTTGCCGT‑CATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTCAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGcatc                                                                                                                                                                                                          >  1:359671/1‑228 (MQ=255)
               gCGACGAGCGTATTCAGAGCTGGTGCGAGCAAATCCTCAACGAAATGGCAGAGCATTACGCCTGATCTCACTGACGGCTTAGCGCATATGCTTTGCCGT‑CATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCTGCACCTCAACGCAGCATCATGCCgag                                                                                                                                                                                                  >  2:766284/1‑234 (MQ=255)
               gCGACGAGCGTATTCAGAGCTGGTGCGAGCAAATCCTCAACGAAATGGCAGAGCATTACGCCTGATCTCACTGACGGCTTAGCGCATATGCTTTGCCGT‑CATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCCTGCCGct                                                                                                                                                                                                  >  2:174409/1‑236 (MQ=255)
                                agCTGGTGCGAGCAAATCCTCAACGAAATGGCAGAGCATTACGCCTGATCTCACTGACGGCTTAGCGCATATGCTTTGCCGT‑CATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCAc                                                                                                                                                                                     >  1:73002/1‑232 (MQ=255)
                                     gTGCGAGCAAATCCTCAACGAAATGGCAGAGCATTACGCCTGATCTCACTGACGGCTTAGCGCATATGCTTTGCCGT‑CATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGTTGCtttt                                                                                                                                                                            >  1:308297/1‑235 (MQ=255)
                                     gTGCGAGCAAATCCTCAACGAAATGGCAGAGCATTACGCCTGATCTCACTGACGGCTTAGCGCATATGCTTTGCCGT‑CATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTg                                                                                                                                                                            >  1:437835/1‑236 (MQ=255)
                                          aGCAAATCCTCAACGAAATGGCAGAGCATTACGCCTGATCTCACTGACGGCTTAGCGCATATGCTTTGCCGT‑CATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGa                                                                                                                                                                        >  1:545796/1‑235 (MQ=255)
                                          aGCAAATCCTCAACGAAATGGCAGAGCATTACGCCTGATCTCACTGACGGCTTAGCGCATATGCTTTGCCGT‑CATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACATAAACg                                                                                                                                                                                                                 <  1:137653/194‑1 (MQ=255)
                                          aGCAAATCCTCAACGAAATGGCAGAGCATTACGCCTGATCTCACTGACGGCTTAGCGCATATGCTTTGCCGT‑CATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACATAAACg                                                                                                                                                                                                                 >  2:137653/1‑194 (MQ=255)
                                                tCCTCAACGAAATGGCAGAGCATTACGCCTGATCTCACTGACGGCTTAGCGCATATGCTTTGCCGT‑CATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCCCTTAATCATCCACGGTGCTTTGACGATGCTcc                                                                                                                                                                  >  1:756724/1‑235 (MQ=255)
                                                     aaCGAAATGGCAGAGCATTACGCCTGATCTCACTGACGGCTTAGCGCATATGCTTTGCCGT‑CATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACgca                                                                                                                                                                                                               >  1:509053/1‑185 (MQ=255)
                                                           aTGGCAGAGCATTACGCCTGATCTCACTGACGGCTTAGCGCATATGCTTTGCCGT‑CATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCtt                                                                                                                                                      >  2:340944/1‑236 (MQ=255)
                                                                   gCATTACGCCTGATCTCACTGACGGCTTAGCGCATATGCTTTGCCGT‑CATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGCCAACg                                                                                                                                               >  1:750402/1‑235 (MQ=255)
                                                                              gATCTCACTGACGGCTTAGCGCATATGCTTTGCCGT‑CATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATg                                                                                                                                                                                                       <  1:405078/168‑1 (MQ=255)
                                                                              gATCTCACTGACGGCTTAGCGCATATGCTTTGCCGT‑CATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATg                                                                                                                                                                                                       >  2:405078/1‑168 (MQ=255)
                                                                                                          tttGCCGTACATCTTTATCTTCGCCTCTTGTGTGCAAACAAATCCCGCCAAAAATCCCGCCATCCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGCCAACGCAAACGCCCGTCCATCAACAAGCGAATTTCCCCCTGGCg                                                                                                        <  2:545796/236‑1 (MQ=255)
                                                                                                                    atctttatctttGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGCCAACGCAAACGCCCGTCCATCAACAAGCGAATTTCCCCCTGGCGAGCATTAAt                                                                                               >  2:484896/1‑235 (MQ=255)
                                                                                                                              ttGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGCCAACGCCAACGCCCGTCCATCAACAAGCGAATTTCCCCCTGGCGAGCATTAATACGCCgctggc                                                                                    >  1:300308/1‑236 (MQ=255)
                                                                                                                              ttGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGCCAACGCAAACGCCCGTCCATCAACAAGCGAATTTCCCCCTGGCGAGCATTAATACGCCgctggc                                                                                    >  2:588069/1‑236 (MQ=255)
                                                                                                                              ttGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTAGCCAACGCAAACGCCCGTCCATCAACAAGCGAATTTCCCCCTGGCGAGCATTACTACGtcgctcgc                                                                                    >  2:446726/1‑236 (MQ=255)
                                                                                                                                gCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGCCAACGCAAACGCCCGTCCATCAACAAGCGAATTTCCCCCTGGCGTGCATTAATACGCCgctggctg                                                                                  >  2:746752/1‑236 (MQ=255)
                                                                                                                                     tctTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGCCAACGCAAACGCCCGTCCATCAACAAGCGAATTTCCCCCTGGCGAGCATTAATACGCCGCTGGCTGCGAAc                                                                             >  1:6478/1‑236 (MQ=255)
                                                                                                                                               acaaAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCAACTCCTGCCCTTGCCAACGCAAACGCCCGTCCATCAACAAGCGAATTTCCCCCTGGCGAGCATTAATACGCCGCTGGCTGCGaaacacaccaaac                                                                   >  1:360085/1‑225 (MQ=255)
                                                                                                                                                        gccgTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGCCAACGCAAACGCCCGTCCATCAACAAGCGAATTTCCCCCTGGCGAGCATTAATACGCCGCTGGCTGCGAACGCAATCAAACACCACCAGc                                                          <  1:400088/236‑1 (MQ=255)
                                                                                                                                                        ctctaaaaTCCCTCCAGTCAGCCTCGTCCATGCTGTGGGCTGCCAGCCATAAAGGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGCCAACGCAAACGCCCGTCCATCAACAAGCGAATTTCCCCCTGGCGAGCATTAATACGCCGCTGGCTGCGAACGCAATCAAACACCACCAGc                                                          <  2:756724/231‑1 (MQ=255)
                                                                                                                                                                  cctccATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGCCAACGCAAACGCCCGTCCATCAACAAGCGAATTTCCCCCTGGCGAGCATTAATACGCCGCTGGCTGCGAACGCAATCAAACACCACCAGCGAAAGTAaca                                                <  1:544676/233‑1 (MQ=255)
                                                                                                                                                                    gCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGCCAACGCAAACGCCCGTCCATCAACAAGCGAATTTCCCCCTGGCGAGCATTAATACGCCGCTGGCTGCGAACGCAATCAAACACCACCAGCGCAAGTAacac                                               >  1:641008/1‑235 (MQ=255)
                                                                                                                                                                    gCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGCCAACGCAAACGCCCGTCCATCAACAAGCGAATTTCCCCCTGGCGAGCATTAATACGCCGCTGGCTGCGAACGCAATCAAACACCACCAGCGAAAGTAacac                                               >  1:257603/1‑235 (MQ=255)
                                                                                                                                                                    ccaatcacgtttCGTCCATGCTGTCGGCTCCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGCCAACGCAAACGCCCGTCCATCAACAAGCGAATTTCCCCCTGGCGAGCATTAATACGCCGCTGGCTGCGAACGCAATCAAACACCACCAGCGAAAGTAACAcc                                              <  1:163074/226‑1 (MQ=255)
                                                                                                                                                                                 gTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGCCAACGCAAACGCCCGTCCATCAACAAGCGAATTTCCCCCTGGCGAGCATTAATACGCCGCTGGCTGCGAACGCAATCAAACACCACCAGCGAAAGTAACACCATCCATAACggg                                  <  1:709022/235‑1 (MQ=255)
                                                                                                                                                                                     aTGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGCCAACGCAAACGCCCGTCCATCAACAAGCGAATTTCCCCCTGGCGa                                                                                                       <  1:118484/162‑1 (MQ=255)
                                                                                                                                                                                     aTGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGCCAACGCAAACGCCCGTCCATCAACAAGCGAATTTCCCCCTGGCGa                                                                                                       >  2:118484/1‑162 (MQ=255)
                                                                                                                                                                                       gCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGCCAACGCAAACGCCCGTCCATCAACAAg                                                                                                                         >  1:226122/1‑142 (MQ=255)
                                                                                                                                                                                       gCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGCCAACGCAAACGCCCGTCCATCAACAAg                                                                                                                         <  2:226122/142‑1 (MQ=255)
                                                                                                                                                                                                  ccagccaTAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGCCAACGCAAACGCCCGTCCATCAACAAGCGAATTTCCCCCTGGCGAGCATTAATACGCCGCTGGCTGCGAACGCAATCAAACACCACCAGCGAAAGTAACACCATCCATAACGGGGTGTAACTGAGTGGCCAg                >  1:323148/1‑236 (MQ=255)
                                                                                                                                                                                                  ccagccaTAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGCCAACGCAAACGCCCGTCCATCAACAAGCGAATTTCCCCCTGGCGAGCATTAATACGCCGCTGGCTGCCAACGCAATCAAACACCACCAGCGAAAGTAACACCATCCATAACGCGGGGTAACTGAGTGTCCaa                >  2:446958/1‑235 (MQ=255)
                                                                                                                                                                                                     gccaTAATTGTTCCCGTTCCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGCCAACGCAAACGCCCGTCCATCAACAAGCGAATTTCCCCCTGGCGAGCATTAATACGCCGCTGGCTGCGAACGCAATCAAACACCACCAGCGAAAGTAACACCATCCATAACGGGGTGTAACTGAGTGGCCAGGGc             <  1:244445/236‑1 (MQ=255)
                                                                                                                                                                                                     gcactaacggTTCCCATTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGCCAACGCAAACGCCCGTCCATCAACAAGCGAATTTCCCCCTGGCGAGCATTAATACGCCGCTGGCTGCGAACGCAATCAAGCACCACCAGCGAAAGTAACACCATCCATAACGGGGTGTAACTGAGTGGCCAGGGc             <  2:699074/227‑1 (MQ=255)
                                                                                                                                                                                                       caTAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGCCAACGCAAACGCCCGTCCATCAACAAGCGAATTTCCCCCTGGCg                                                                                                        >  1:662743/1‑143 (MQ=255)
                                                                                                                                                                                                       caTAAATGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGCCAACGCAAACGCCCGTCCATCAACAAGCGAATTTCCCCCTGGCg                                                                                                        <  2:662743/143‑1 (MQ=255)
                                                                                                                                                                                                          aaaTGTTGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCCCGGTGCTTTGACGATGCTCCACTCCTGCCCTTGCCAACGCAAACGCCCGTCCATCAACAAGCGAATTTCCCCCTGGCGAGCATTAATACGCCGCTGGCTGCGAACGCAATCAAACACCACCAGCGAAAGTAACACCATCCATAACGGGGTGTAACTGAGTGGCCAGGGCATg          <  1:340944/234‑1 (MQ=255)
                                                                                                                                                                                                          aaaTGTTGACGTGTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGCCAACGCAAACGCCCGTCCATCAACAAGCGAATTTCCCCCTGGCGAGCATTAATACGCCGCTGGCTGCGAACGCAATCAAACACCACCAGCGAAAGTAACACCATCCATAACGGGGTGTAACTGAGTGGCCAGGGc             <  1:766284/231‑1 (MQ=255)
                                                                                                                                                                                                                tGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGCCAACGCAAACGCCCGTCCATCAACAAGCGAATTTCCCCCTGGCGAGCATTAATACGCCGCTGGCTGCGAACGCAATCAAACACCACCAGCGAAAGTAACACCATCCATAACGGGGTGTAACTGAGTGGCCAGGGCATGAGTAAAAt  >  2:161021/1‑236 (MQ=255)
                                                                                                                                                                                                                tGCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGCCAACGCAAACGCCCGTCCATCAACAAGCGAATTTCCCCCTGGCGAGCATTAATACGCCGCTGGCTGCGAACGCAATCAAACACCACCAGCGAAAGTAACACCATCCATAACGGGGCGTAACTGATTGGCCAGGGCATGGGTAACAt  >  2:728504/1‑236 (MQ=255)
                                                                                                                                                                                                                 gCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGCCAACGCAAACGCCCGTCCATCAACAAGCGAATTTcccc                                                                                                              <  1:595394/127‑1 (MQ=255)
                                                                                                                                                                                                                 gCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGCCAACGCAAACGCCCGTCCATCAACAAGCGAATTTcccc                                                                                                              >  2:595394/1‑127 (MQ=255)
                                                                                                                                                                                                                 gCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGCCAACGCAAACGCCCGTCCATCAACAAGCGAATTTCCCCCTGGCGAGCATTAATACGCCGCTGGCTGCGAACGCAATCAAACACCACCAGCGAAAGTAACAcc                                              <  1:179427/191‑1 (MQ=255)
                                                                                                                                                                                                                 gCCGTTTCCCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGCCAACGCAAACGCCCGTCCATCAACAAGCGAATTTCCCCCTGGCGAGCATTAATACGCCGCTGGCTGCGAACGCAATCAAACACCACCAGCGAAAGTAACAcc                                              >  2:179427/1‑191 (MQ=255)
                                                                                                                                                                                                                        |                                                                                                                                                                                                                                   
ACCAGTATGACCTTAGCGACGAGCGTATTCAGAGCTGGTGCGAGCAAATCCTCAACGAAATGGCAGAGCATTACGCCTGATCTCACTGACGGCTTAGCGCATATGCTTTGCCGT‑CATCTTTATCTTTGCGTCTCTTGTTGCAACAAAATCCGCCGTAAATCCCGCCATTCAGCTTCGTCCATGCTGTCGGCTGCCAGCCATAAATGTTGCCGTTTACCGCCATCAGAACGTAAACGCAGCATCATGCCGCTCTTAATCATCCACGGTGCTTTGACGATGCTCCACTCCTGCCCTTGCCAACGCAAACGCCCGTCCATCAACAAGCGAATTTCCCCCTGGCGAGCATTAATACGCCGCTGGCTGCGAACGCAATCAAACACCACCAGCGAAAGTAACACCATCCATAACGGGGTGTAACTGAGTGGCCAGGGCATGAGTAAAAT  >  NC_000913/3040297‑3040739

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A