Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F422 I51 R1
|
223 |
69.9 |
1534784 |
95.1% |
1459579 |
214.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,602,989 |
T→G |
I419L (ATT→CTT) |
ftsY ← |
Signal Recognition Particle (SRP) receptor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,602,989 | 0 | T | G | 98.8%
| 276.0
/ NA
| 81 | I419L (ATT→CTT) | ftsY | Signal Recognition Particle (SRP) receptor |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base G (41/39); total (42/39) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CTCTCGGGCAAAAAGTGCCTCTATAAAGTCGTCCGCCTTAAACGGACGCAAATCCTCAATACGTTCGCCGACACCAATGTAGCGGATAGGGATACCAAACTGGTCAGCCACCGAGAAAATTACCCCGCCTTTCGCCGTGCCGTCCAGTTTCGTTAGCGTGATGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAATAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTACGCGCTTTAGCTGCCTGAATGGCGTCGAAGATAACAGAGGCGGAATCCGCCCCGGTATGCTGGGCAATCACCGGAATATTGTTGCGCTGACCCC > NC_000913/3602756‑3603216
|
ctctCGGGCAAAAAGTGCCTCTATAAAGTCGTCCGCCTTAAACGGACGCAAATCCTCAATACGTTCGCCGACACCAATGTAGCGGATAGGGATACCAAACTGGTCAGCCACCGAGAAAATTACCCCGCCTTTCGCCGTGCCGTCCAGTTTCGTTAGCGTGATGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAagag < 1:469257/236‑1 (MQ=255)
tctcGGGCAAAAAGTGCCTCTATAAAGTCGTCCGCCTTAAACGGACGCAAATCCTCAATACGTTCGCCGACACCAATGTAGCGGATAGGGATACCAAACTGGTCAGCCACCGAGAAAATTACCCCGCCTTTCGCCGTGCCGTCCAGTTTCGTTAGCGTGATGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGt < 1:159178/236‑1 (MQ=255)
tctcGGGCAAAAAGTGCCTCTATAAAGTCGTCCGCCTTAAACGGACGCAAATCCTCAATACGTTCGCCGACACCAATGTAGCGGATAGGGATACCAAACTGGTCAGCCACCGAGAAAATTACCCCGCCTTTCGCCGTGCCGTCCAGTTTCGTTAGCGTGATGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGt < 2:457790/236‑1 (MQ=255)
tctcGGGCAAAAAGTGCCTATATAAAGTCGTCCGCCTTAAACGGACGCAAATCCTCAATACGTTCGCCGACACCAATGTAGCGGATAGGGATACCAAACTGGTCAGCCACCGAGAAAATTACCCCGCCTTTCGCCGTGCCGTCCAGTTTCGTTAGCGTGATGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGt < 1:91660/236‑1 (MQ=255)
gtgcGGGCAAAAGGTGCCTCTATAAAGTCGTCCGCCTTAAACGGACGCAAATCCTCAATACGTTCGCCGACACCAATGTAGCGGATAGGGATACCAAACTGGTCAGCCACCGAGAAAATTACCCCGCCTTTCGCCGTGCCGTCCAGTTTCGTTAGCGTGATGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGt < 2:250969/233‑1 (MQ=255)
ggCAAAAAGTGCCTCTATAAAGTCGTCCGCCTTAAACGGACGCAAATCCTCAATACGTTCGCCGACACCAATGTAGCGGATAGGGATACCAAACTGGTCAGCCACCGAGAAAATTACCCCGCCTTTCGCCGTGCCGTCCAGTTTCGTTAGCGTGATGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCa > 2:370000/1‑236 (MQ=255)
aaaaGTGCCTCTATAAAGTCGTCCGCCTTAAACGGACGCAAATCCTCAATACGTTCGCCGACACCAATGTAGCGGATAGGGATACCAAACTGGTCAGCCACCGAGAAAATTACCCCGCCTTTCGCCGTGCCGTCCAGTTTCGTTAGCGTGATGCCGGTTAAGCCATCGGCTTCATGTAACAGTTTGGCCTTGTTTACCGCGTTCTGCCCGTTGCTGCCACACAGAGTCAGCATAAc > 2:63754/1‑236 (MQ=255)
gCCTCTATAAAGTCGTCCGCCTTAAACGGACGCAAATCCTCAATACGTTCGCCGACACCAATGTAGCGGATAGGGATACCAAACTGGTCAGCCACCGAGAAAATTACCCCGCCTTTCGCCGTGCCGTCCAGTTTCGTTAGCGTGATGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATg < 1:455970/236‑1 (MQ=255)
ctAGAAAGTCGTCCGACTTAAACGGACGCAAATCCTAAATACGTTCGCCGACACCAATGTAGCGGATAGGGATACCAAACTGGTCAGCCACCGAGAAAATTACCCCGCCTTTCGCCGTGCCGTCCAGTTTCGTTAGCGTGATGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATgcgg < 1:382031/235‑1 (MQ=255)
aacgtcgtcCGACGTAAACGGACCCAAATCCTAAATACGTTCGCCGACACCAATTTAGCGGATAGGGATACCAAACTGGTCAGCCACCGAGAAAATTCCCCCGCCTTTCGCCGTGCCGTCCAGTTTCGTTAGCGTGATGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCa < 2:631827/215‑1 (MQ=255)
aGTCGTCCGCCTTAAACGGACGCAAATCCTCAATACGTTCGCCGACACCAATGTAGCGGATAGGGATACCAAACTGGTCAGCCACCGAGAAAATTACCCCGCCTTTCGCCGTGCCGTCCAGTTTCGTTAGCGTGATGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCa < 1:569237/236‑1 (MQ=255)
tcCGCCTTAAACGGACGCAATTCCTCAATACGTTCGCCGCCCCCAATGTAGCGGAAAGGGAAACCAAACTGGTAAGCCACCGGGAAAATTACCCCCCCTTTCGCCGTCCCGTCCGGTTCCGTAAGCGGGATCCCGGTTAGCCCAAGGGCTTCATGGAACAGTTTGGCCTGGCTTACCCCGTTCTGCCCGGACTTGGCTTCAGTGGTACGACTAACTCCATGCGGCGC‑TTCac > 2:22378/1‑231 (MQ=255)
tcCGCCTTAAACGGACGCAAATCCTCAATACGTTCGCCGACACCAATGTAGCGGATAGGGATACCAAACTGGTCAGCCACCGAGAAAATTACCCCGCCTTTCGCCGTGCCGTCCAGTTTCGTTAGCGTGATGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTTCCCGGTGCTGGCATCAAGAGTCAGCGTACCTTCAT‑CCGCGCGTTCAACGTc > 2:620704/1‑236 (MQ=255)
tcCGCCTTAAACGGACGCAAATCCTCAATACGTTCGCCGACACCAATGTAGCGGATAGGGATACCAAACTGGTCAGCCACCGAGAAAATTACCCCGCCTTTCGCCGTGCCGTCCAGTTTCGTTAGCGTGATGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCCTAACTTCATTCGGTGC‑TTCAACgcc > 2:250067/1‑234 (MQ=255)
tcCGCCTTAAACGGACGCAAATCCTCAATACGTTCGCCGACACCAATGTAGCGGATAGGGATACCAAACTGGTCAGCCACCGAGAAAATTACCCCGCCTTTCGCCGTGCCGTCCAGTTTCGTTAGCGTGATGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTc > 1:398243/1‑236 (MQ=255)
tcCGCCTTAAACGGACGCAAATCCTCAATACGTTCGCCGACACCAATGTAGCGGATAGGGATACCAAACTGGTCAGCCACCGAGAAAATTACCCCGCCTTTCGCCGTGCCGTCCAGTTTCGTTAGCGTGATGCCGGTTAAGCCAACGGCTTCATGGAAAAGTTTGGCCTGGCTTACCGCGTTCTGTCCGGTGCTGGCATCAAGAGTCAGCATAACTTc > 1:631827/1‑218 (MQ=255)
ccGCCTTAAACGGACGCAAATCCTCAATACGTTCGCCGACACCAATGTAGCGGATAGGGATACCAAACTGGTCAGCCACCGAGAAAATTACCCCGCCTTTCGCCGTGCCGTCCAGTTTCGTTAGCGTGATGCCGGTTAAGCCAACAGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCg < 1:396858/236‑1 (MQ=255)
cGCAAATCCTCAATACGTTCGCCGACACCAATGTAGCGGATAGGGATACCAAACTGGTCAGCCACCGAGAAAATTACCCCGCCTTTCGCCGTGCCGTCCAGTTTCGTTAGCGTGATGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCAc > 1:413631/1‑236 (MQ=255)
tCGCCGACACCAATGTAGCGGATAGGGATACCAAACTGGTCAGCCACCGAGAAAATTACCCCGCCTTTCGCCGTGCCGTCCAGTTTCGTTAGCGTGATGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTttct > 1:302686/1‑232 (MQ=255)
gCCGACACCAATGTAGCGGATAGGGATACCAAACTGGTCAGCCACCGAGAAAATTACCCCGCCTTTCGCCGTGCCGTCCAGTTTCGTTAGCGTGATGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAAct < 1:725753/236‑1 (MQ=255)
ccGACACCAATGTAGCGGATAGGGATACCAAACTGGTCAGCCACCGAGAAAATTACCCCGCCTTTCGCCGTGCCGTCCAGTTTCGTTAGCGTGATGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTGCTTCATCACGCGGCGGATTTTCTTCAAcg > 2:168406/1‑234 (MQ=255)
cGAAACCAATGTAGCGGATAGGGATTCCAAACTGGTCAGCCAACGAGAAAATTACCCCGCCTTTCGCCGTGCCGTCCAGTTTCGTTAGCGTGATGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAActct < 1:531347/236‑1 (MQ=255)
tGTAGCGGATAGGGATACCAAACTGGTCAGCCACCGAGAAAATTACCCCGCCTTTCGCCGTGCCGTCCAGTTTCGTTAGCGTGATGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCCTAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGAGTTTCTGCAACTCTTCCATCAgg > 2:356782/1‑236 (MQ=255)
cGGATAGGGATACCAAACTGGTCAGCCACCGAGAAAATTACCCCGCCTTTCGCCGTGCCGTCCAGTTTCGTTAGCGTGATGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGa > 2:252958/1‑236 (MQ=255)
tGGTCAGCCACCGAGAAAATTACCCCGCCTTTCGCCGTGCCGTCCAGTTTCGTTAGCGTGATGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGt > 2:766177/1‑234 (MQ=255)
gagaAAATTACCCCGCCTTTCGCCGTGCCGTCCAGTTTCGTTAGCGTGATGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCgg > 2:325112/1‑235 (MQ=255)
gagaAAATTACCCCGCCTTTCGCCGTGCCGTCCAGTTTCGTTAGCGTGATGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCgg > 2:217704/1‑235 (MQ=255)
aaTTACCCCGCCGTTCGCCGGGCCGTCCAGTTTCGTTAGCGTGATGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGGCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATc < 1:231076/235‑1 (MQ=255)
ccTTTCGCCGTGCCGTCCAGTTTCGTTAGCGTGATGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGat > 2:392084/1‑236 (MQ=255)
tCGCCGTGCCGTCCAGTTTCGTTAGCGTGATGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTa < 1:217704/236‑1 (MQ=255)
gccgtgccgtCCAGTTTCGTTAGCGTGATGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTAcg < 1:252958/236‑1 (MQ=255)
tgccgtCCAGTTTCGTTAGCGTGATGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCAGGGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTACgcgc > 2:672410/1‑236 (MQ=255)
tgccgtCCAGTTTCGTTAGCGTGATGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTACGCGCt > 2:668262/1‑236 (MQ=255)
tccgtCCAGTTTTGTTAGCCTTATGCCGGTTAAGCCCACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTACGCGCt < 1:635582/234‑1 (MQ=255)
gccgtCCAGTTTCGTTAGCGTGATGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTACGCGCt > 1:275616/1‑235 (MQ=255)
gtCCAGTTTCGTTAGCGTGATGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTACGCGCTTTa < 1:370000/235‑1 (MQ=255)
tCCAGTTTCGTTAGCGTGATGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGt > 1:171102/1‑172 (MQ=255)
tCCAGTTTCGTTAGCGTGATGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGt < 2:171102/172‑1 (MQ=255)
ccAGTTTCGTTAGCGTGATGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTACGCGCTTTAGc < 1:766177/235‑1 (MQ=255)
ccAGTTTCGTTAGCGTGATGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTACGCGCTTTAGc < 1:428393/235‑1 (MQ=255)
tAGCGTGATGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCAGGGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTACGCGCTTTAGCTGCCTGAATg < 1:672410/236‑1 (MQ=255)
tAGCGTGATGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTNTNTCGGCAATCAGGACGTCGATATTACGAGCTTTAGCTGCCTGAATg > 2:516018/1‑235 (MQ=255)
gCGTGATGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTACGCGCTTTAGCTGCCTGAATGGCg < 1:621305/236‑1 (MQ=255)
cGTGATGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTACGCGCTTTAGCTGCCTGAATGGCg < 1:620704/235‑1 (MQ=255)
cGTGATGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTACGCGCTTTAGCTGCCTGAATGGCg < 1:325112/235‑1 (MQ=255)
cGTGATGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTACGCGCTTTAGCTGCCTGAATGGCg < 1:392084/235‑1 (MQ=255)
gTGATGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGGTTCGGCAATCAGGGCGTCGCTATTACTCGCTTTAGCTGCCTGCATGGCGTc > 2:200836/1‑236 (MQ=255)
aTGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTACGCGCTTTAGCTGCCTGAATGGCGTCGaa > 2:605858/1‑236 (MQ=255)
tGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTACGCGCTTTAGCTGCCTGAATGGCGTCg < 1:671969/233‑1 (MQ=255)
tGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTACGCGCTTTAGCTGCCTGAATGGCGTCg > 2:671969/1‑233 (MQ=255)
ggTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTACGCGCTTTAGCTGCCTGAATGGCGTCGAAGATaa < 1:668262/236‑1 (MQ=255)
ccAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTACGCGCTTTAGCTGCCTGAATGGCGTCGAAGATAACAGAGGc < 1:605858/236‑1 (MQ=255)
cGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTACGCGCTTTAGCTGCCTGAATGGCGTCGAAGATAACAGAGGCGGaa > 2:79291/1‑236 (MQ=255)
tGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTACGCGCTTTAGCTGCCTGAATGGCGTCCAAGCTAACAGAGTCGGAATCCGcccc > 2:355212/1‑236 (MQ=255)
ggAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTGCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCATCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTACGCGCTTTAGCTGCCTGAATGGCGTCGAAGATAACAGAGGCGGAATCCGCCCCg < 1:675040/236‑1 (MQ=255)
aaCAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTACGCGCTTTAGCTGCCTGAATGGCGTCGAAGATAACAGAGGCGGAATCCGCCCCgg > 1:107412/1‑235 (MQ=255)
tttGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTACGCGCTTTAGCTGCCTGAATGGCGTCGAAGATAACAGAGTCGGAATCCTCCTCGGTATGc > 2:309999/1‑235 (MQ=255)
tttGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTACGCGCTTTAGCTGCCTGAATGGCGTCGAAGATAAAAGAGGCGGAATCCGGCACGGTATGc > 2:397588/1‑235 (MQ=255)
tGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTACGCGCTTTAGCTGCCTGAATGGCGTCGAAGATAACAGAGGCGGAATCCTCCCCGGTATGCTgg > 1:225352/1‑236 (MQ=255)
tGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTACGCGCTTTAGCTGCCTGAATGGCGTCGAAGATAACAGAGGCGGAATCCGCCCCGGTATGCTgg > 1:144476/1‑236 (MQ=255)
ccTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACt > 2:370775/1‑50 (MQ=255)
ccTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACt < 1:370775/50‑1 (MQ=255)
ggCTCACCGGTTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTACGCGCTTTAGCTGCCTGAATGGCGTCGAAGATAACAGAGGCGGAATCCGCCCCGGTATGCTGGGCAAt < 2:725263/235‑1 (MQ=255)
gCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTAcgcg < 2:323443/170‑1 (MQ=255)
gCTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTAcgcg > 1:323443/1‑170 (MQ=255)
cTTACCGCGTTCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTACGCGCTTTAGCTGCCTGAATGGCGTCGAAGATAACAGAGGCGGAATCCGCCCCGGTATGCTGGGCAATCAc > 1:725263/1‑236 (MQ=255)
ttCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGc > 1:553458/1‑117 (MQ=255)
ttCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGc < 2:553458/117‑1 (MQ=255)
ttCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTACGCGCTTTAGCTGCCTGAATGGCGTCGAAGATAACAGAGGCGGAATCCg < 2:436451/205‑1 (MQ=255)
ttCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTACGCGCTTTAGCTGCCTGAATGGCGTCGAAGATAACAGAGGCGGAATCCg > 1:436451/1‑205 (MQ=255)
ttCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTACGCGCTTTAGCTGCCTGAATGGCGTCGAAGATAACAGAGGCGGAATCCGCCCCGGTATGCTGGGCAATCACCGGaa < 2:536396/232‑1 (MQ=255)
ttCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTACGCGCTTTAGCTGCCTGAATGGCGTCGAAGATAACAGAGGCGGAATCCGCCCCGGTATGCTGGGCAATCACCGGaa > 1:536396/1‑232 (MQ=255)
ttCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTACGCGCTTTAGCTGCCTGAATGGCGTCGAAGATAACAGAGGCGGAATCCGCCCCGGTATGCTGGGCAATCACCGGAATAtt > 2:580665/1‑236 (MQ=255)
ttCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTACGCGCTTTAGCTGCCTGAATGGCGTCGAAGATAACAGAGGCGGAATCCGCCCCGGTATGCTGGGCAATCACCGGAATAtt > 1:237698/1‑236 (MQ=255)
ttCTGCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTACGCGCTTTAGCTGCCTGAATGGCGTCGAAGATAACAGAGGCGGAATCCGCCCCGGTATGCTGGGCAATCACCGGAATAtt > 1:132244/1‑236 (MQ=255)
gCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTACGCGCTTTAGCTGCCTGAATGGCGTCGAAGATAACAGAGGCGGAATCCGCCCCGGTATGCTGGGCAATCACCGGAATAttgttg > 1:371591/1‑236 (MQ=255)
gCCCGGTGCTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTACGCGCTTTAGCTGCCTGAATGGCGTCGAAGATAACAGAGGCGGAATCCGCCCCGGTATGCTGGGCAATCACCGGAATAttgtt < 1:397588/235‑1 (MQ=255)
gttcTGGCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTACGCGCTTTAGCTGCCTGAATGGCGTCGAAGATAACAGAGGCGGAATCCGCCCCGGTATGCTGGGCAATCACCGGAATATTGTTGCGCt < 2:275616/232‑1 (MQ=255)
ggCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTACGCGCTTTAGCTGCCTGAATGGCGTCGAAGATAACAGAGGCGGAATCCGCCCCGGTATGCTGGGCAATCACCGGAATATTGTTGCGCTGAcccc < 1:191603/236‑1 (MQ=255)
ggCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTACGCGCTTTAGCTGCCTGAATGGCGTCGAAGATAACAGAGGCGGAATCCGCCCCGGTATGCTGGGCAATCACCGGAATATTGTTGCGCTGAcccc < 1:168406/236‑1 (MQ=255)
ggCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTACGCGCTTTAGCTGCCTGAATGGCGTCGAAGATAACAGAGGCGGAATCCGCCCCGGTATGCTGGGCAATCACCGGAATATTGTTGCGCTGAcccc < 2:144476/236‑1 (MQ=255)
gCATCAAGAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTACGCGCTTTAGCTGCCTGAATGGCGTCGAAGATAACAGAGGCGGAATCCGCCCCGGTATGCTGGGCAATCACCGGAATATTGTTGCGCTGAcccc > 2:141619/1‑235 (MQ=255)
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CTCTCGGGCAAAAAGTGCCTCTATAAAGTCGTCCGCCTTAAACGGACGCAAATCCTCAATACGTTCGCCGACACCAATGTAGCGGATAGGGATACCAAACTGGTCAGCCACCGAGAAAATTACCCCGCCTTTCGCCGTGCCGTCCAGTTTCGTTAGCGTGATGCCGGTTAAGCCAACGGCTTCATGGAACAGTTTGGCCTGGCTTACCGCGTTCTGCCCGGTGCTGGCATCAATAGTCAGCATAACTTCATGCGGCGC‑TTCAACGTCGAGTTTCTTCATCACGCGGACGATTTTCTTCAACTCTTCCATCAGGTGCGATTTGTTCTGCA‑GGCGTCCGGCTGTATCGGCAATCAGGACGTCGATATTACGCGCTTTAGCTGCCTGAATGGCGTCGAAGATAACAGAGGCGGAATCCGCCCCGGTATGCTGGGCAATCACCGGAATATTGTTGCGCTGACCCC > NC_000913/3602756‑3603216
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
