Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F174 I0 R1
|
34 |
41.4 |
875437 |
98.7% |
864056 |
141.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| JC |
USA300TCH1516_ALE |
2,709,677 |
Δ12 bp |
100% |
coding (1239‑1250/1812 nt) |
oatA_2 ← |
O‑acetyltransferase OatA |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
USA300TCH1516_ALE |
= 2709676 | 2 (0.050) | 49 (1.280) |
39/260 |
NT |
96.1% |
coding (1251/1812 nt) |
oatA_2 |
O‑acetyltransferase OatA |
| ? | USA300TCH1516_ALE |
2709689 = |
2 (0.050) | coding (1238/1812 nt) |
oatA_2 |
O‑acetyltransferase OatA |
AGTAAAGACATTACCAATATCCACCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2709538‑2709676
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAACTAACACTGTTCTAGCAAATTGCCCCTTCTTTTTAGGTAAAAATGCAAAAG > USA300TCH1516_ALE/2709689‑2709827
AGTAAAGACATTACCAATATCCACCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATT > 1:646980/1‑141
GACATTACCAATATCCACCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TT < 1:72927/141‑1
CATTACCAATATCCCCCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCT < 1:536807/141‑1
ATTACCAATATCCACCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTTTTTTATTCTCT‑TTCTT > 1:99937/1‑141
CAATATCCACCCTGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTACTATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTACCGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGG < 1:284754/141‑1
CAATATCCACCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGG < 1:547464/141‑1
AATATCCACCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCGTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGC > 1:565102/1‑141
AATATCCACCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGC > 1:90893/1‑141
AATATCCACCATGACCGAGTCACAACTTAATAGTGGTGATGACTTTTTAATATCCTCTTTTCTATTCCCTGTCTGCTTATCATCTTGCTTATCTTTTTTGACGACTTTTTTCTTTCTTGGTTTATTCTCT‑TTTTTtttgct > 1:166561/1‑135
ATCCACCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTC < 1:725453/141‑1
TCCACCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCt > 1:97194/1‑140
ACCATGACCGAGTCACCAATTAATAGTGGTGAGGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGT > 1:863789/1‑141
CCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTT > 1:793886/1‑141
ATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGT < 1:307972/141‑1
GAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCA > 1:174518/1‑141
CCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCc > 1:123631/1‑140
CCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCA > 1:180707/1‑141
TTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAA > 1:501897/1‑141
AATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATACTATGGCTTATATTTTGTATTGACTTTTTTCTTCGTTGTTTTATTCTCT‑TGCTTCTCGGCTTCATGTTTTTTGCCAAGTGCATCAAAC > 1:860316/1‑141
ATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACT < 1:37908/141‑1
AGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGT < 1:253533/141‑1
GGTGATGCCTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCCTTGTTTCTTTCTCT‑CTCAAATCTCGTTCATGTTGATTGCCAAGTGCATTTAACTGTCCA < 1:638022/141‑1
TGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACT > 1:541815/1‑141
TGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAG > 1:862522/1‑141
TGACTTTTTAAGATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAG < 1:4304/141‑1
TGACTTTGTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCACACTGTCCACTTAG > 1:546230/1‑141
GACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTATTCAAGCTACGTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGC < 1:634117/141‑1
TAATTTCCTCCTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGA < 1:277979/141‑1
TAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGA < 1:618154/141‑1
TAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGA < 1:498155/141‑1
TCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGAC > 1:448013/1‑141
CTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAAT > 1:683306/1‑141
tTTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAA < 1:657814/140‑1
ATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAA > 1:687482/1‑141
TTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCCTCAAACTGTCCACTGCGCACAACGATAGACGGAACCAATAAT > 1:31626/1‑141
TCGCTGTTTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATA < 1:422941/141‑1
CGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTT‑TACGATGGTCTGCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAG < 1:200870/141‑1
GTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATA < 1:81758/141‑1
GTCTGCTTATCCTCTTGCTTATCTGTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATA > 1:556960/1‑141
TCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGATGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAA > 1:167421/1‑141
CTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAACTAA > 1:774631/1‑141
ATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAACTAACACTGTTCTAGCAAA > 1:678771/1‑141
TCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAACTAACACTGTTCTAGCAAAT > 1:676134/1‑141
TCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAACTAACACTGTTCTAGCAAAT > 1:752418/1‑141
TCTTTTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAACTAACACTGTTCTAGCAAAT > 1:317438/1‑141
TTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAACTAACACTGTTCTAGCAAATCGCC < 1:120606/141‑1
TTTTAACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCCTCATGGTGGTTGCAAAGTAAATCAGCCTTTGCACTGAGATCATCGATATACGGAACCAATAATAGGATAACTAACACTGTTCTAGCAAATTGCC < 1:204179/141‑1
AACGACTTTTTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAACTAACACTGTTCTCGCAAATTGCCCCTT > 1:515336/1‑141
TTTTCTCTTCGTTGTTTTATTCTCG‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGTCGGAACCAATAATAGGATAACTAACACTGTTCTAGCAAATTGCCCCTTCTTTTT < 1:336559/141‑1
TTTCTTCGTTGTTTTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAACTAACACTGTTCTAGCAAATTGCCCCTTCTTTTTAGG > 1:854783/1‑141
TTATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAACTAACACTGTTCTAGCAAATTGCCCCTTCTTTTTAGGTAAAAATGCAAAA > 1:866586/1‑141
TATTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAACTAACACTGTTCTAGCAAATTGCCCCTTCTTTTTAGGTAAAAATGCAAAAG < 1:668675/141‑1
AGTAAAGACATTACCAATATCCACCATGACCGAGTCACCAATTAATAGTGGTGATGACTTTTTAATATCCTCTTTGCTATTCGCTGTCTGCTTATCCTCTTGCTTATCTTTTTTAACGACTTTTTTCTTCGTTGTTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2709538‑2709676
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCTCT‑TTCTTCTCGGCTTCATGTTGTTTGCCAAGTGCATCAAACTGTCCACTGAGCACAACGATAGACGGAACCAATAATAGGATAACTAACACTGTTCTAGCAAATTGCCCCTTCTTTTTAGGTAAAAATGCAAAAG > USA300TCH1516_ALE/2709689‑2709827
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
