Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F17 I0 R2
|
159 |
90.8 |
4763082 |
92.7% |
4415377 |
60.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
709,001 |
A→G |
9.4% |
Y102H (TAT→CAT) |
yceI ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 709,001 | 0 | A | G | 9.4%
| 283.6
/ 16.8
| 96 | Y102H (TAT→CAT) | yceI | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (31/56); new base G (7/2); total (38/58) |
| Fisher's exact test for biased strand distribution p-value = 2.66e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.81e-01 |
AGATCGCCGGTAATATCCAGTTCGTCACCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTGCACTGCGAAGATGTTTATCGCGTTCGGCGTGATTAGTATCGACGCTG > minE/708931‑709071
|
aGATCGCCGGTAATATCCAGTTCGTCACCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGata > 1:4210891/1‑71 (MQ=255)
aTCGCCGGTAATATCCAGTTCGTCACCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATAtt < 1:856362/71‑1 (MQ=255)
aTCGCCGGTAATATCCAGTTCGTCACCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATAtt < 1:1424643/71‑1 (MQ=255)
tCGCCGGTAATATCCAGTTCGTCACCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATAttt > 1:4747887/1‑71 (MQ=255)
tCGCCGGTAATATCCAGTTCGTCACCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATAttt > 1:1386783/1‑71 (MQ=255)
atatCCAGTTCGTCACCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATGTTTTGCGGTAtt < 1:812136/71‑1 (MQ=255)
atatCCAGTTCGGCACCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTAtt < 1:3623531/71‑1 (MQ=255)
tatCCAGTTCGTCACCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATAttt < 1:1325690/61‑1 (MQ=255)
tatCCAGTTCGTCACCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTg < 1:2690065/63‑1 (MQ=255)
tatCCAGTTCGTCACCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTg < 1:3753033/63‑1 (MQ=255)
tatCCAGTTCGTCACCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTg < 1:3214466/63‑1 (MQ=255)
tatCCAGTTCGTCACCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTg < 1:1668441/71‑1 (MQ=255)
tCCAGTTCGTCACCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCg > 1:1753245/1‑63 (MQ=255)
tCCAGTTCGTCACCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGt < 1:1820984/65‑1 (MQ=255)
tCCAGTTCGTCACCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGt < 1:3858419/65‑1 (MQ=255)
tCCAGTTCGTCACCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGa < 1:1024008/70‑1 (MQ=255)
tCCAGTTCGTCACCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAg < 1:3721345/71‑1 (MQ=255)
ccAGTTCGTCACCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAg > 1:3140962/1‑70 (MQ=255)
cAGTTCGTCACCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAgg < 1:2629709/70‑1 (MQ=255)
aGTTCGTCACCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAGGaa < 1:2385814/71‑1 (MQ=255)
aGTTCGTCACCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAGGaa < 1:4196178/71‑1 (MQ=255)
aGTTCGTCACCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAGGaa < 1:4195083/71‑1 (MQ=255)
aGTTCGTCACCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAGGaa < 1:3119284/71‑1 (MQ=255)
gTTCGTCACCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTAtt < 1:2741610/64‑1 (MQ=255)
gTTCGTCACCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTAtt < 1:323022/64‑1 (MQ=255)
gTTCGTCACCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTAtt < 1:2058575/64‑1 (MQ=255)
gTTCGTCACCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAGGaaa < 1:71023/71‑1 (MQ=255)
cGTCACCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATAtttt > 1:2710125/1‑53 (MQ=255)
cGTCACCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAg > 1:2919258/1‑64 (MQ=255)
cGTCACCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAg > 1:3136263/1‑64 (MQ=255)
cGTCACCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAg > 1:190927/1‑64 (MQ=255)
cGTCACCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCt > 1:269371/1‑71 (MQ=255)
gTCACCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTg > 1:2969289/1‑71 (MQ=255)
gTCACCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTg < 1:537186/71‑1 (MQ=255)
gTCACCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTg < 1:2665645/71‑1 (MQ=255)
gTCACCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTg < 1:4188940/71‑1 (MQ=255)
gTCACCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTg < 1:1695755/71‑1 (MQ=255)
gTCACCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTg > 1:2274470/1‑71 (MQ=255)
gTCACCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTg < 1:2154732/71‑1 (MQ=255)
tCACCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTGc < 1:594416/71‑1 (MQ=255)
cACCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTGCa > 1:3960237/1‑71 (MQ=255)
aCCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGa < 1:2257355/59‑1 (MQ=255)
aCCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGa < 1:1304137/59‑1 (MQ=255)
aCCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGa < 1:2070267/59‑1 (MQ=255)
aCCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTGCAc > 1:1701364/1‑71 (MQ=255)
aCCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTGCAc > 1:4747249/1‑71 (MQ=255)
aCCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTGCAc > 1:3566381/1‑71 (MQ=255)
cGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGt < 1:602545/52‑1 (MQ=255)
tctttcttCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTGCACTGCg < 1:3381919/71‑1 (MQ=255)
tctttcttCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTGCACTGCg < 1:3599000/71‑1 (MQ=255)
ctttcttCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTGCACTGCg < 1:3544634/70‑1 (MQ=255)
tttcttCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTg < 1:2768733/62‑1 (MQ=255)
tttcttCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTg < 1:3852228/62‑1 (MQ=255)
tttcttCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTg < 1:3863720/62‑1 (MQ=255)
tcttcACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTAtt > 1:650069/1‑49 (MQ=255)
tcttcACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTAtt > 1:4561198/1‑49 (MQ=255)
tcttcACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTAtt > 1:766149/1‑49 (MQ=255)
tcttcACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTGCACTg > 1:1344090/1‑65 (MQ=255)
tcttcACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTGCACTGCg > 1:877286/1‑67 (MQ=255)
tcttcACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTGCACTGCg > 1:2842289/1‑67 (MQ=255)
tcttcACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTGCACTGCg > 1:4643470/1‑67 (MQ=255)
tcttcACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTGCACTGCGaa < 1:1540179/69‑1 (MQ=255)
ttcACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAGGAAAt > 1:643488/1‑55 (MQ=255)
ttcACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAGGAAAt > 1:3804013/1‑55 (MQ=255)
cACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTGCACTGCGAAGATg < 1:3591480/69‑1 (MQ=255)
aCGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTGCACTGCGAAGATGttt < 1:963352/71‑1 (MQ=255)
aCGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTGCACTGCGAAGATGttt < 1:2468774/71‑1 (MQ=255)
aCGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTGCACTGCGAAGATGttt < 1:11483/71‑1 (MQ=255)
aCGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTGCACTGCGAAGATGttt < 1:1793961/71‑1 (MQ=255)
cTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTGCACTGCGAAGATGTTTAt < 1:873697/70‑1 (MQ=255)
aGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTGCACTGCGAAGATGTTTATCGCGTTCg < 1:3627036/71‑1 (MQ=255)
aGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTGCACTGCGAAGATGTTTATCGCGTTCg < 1:1389041/71‑1 (MQ=255)
tgTGAATGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTGCACTGCGAAGATGTTTATCGCGTTCg < 1:881780/69‑1 (MQ=255)
ggTGAATGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTGCACTGCGAAGATGTTTATCGCGTTCgg > 1:3021797/1‑71 (MQ=255)
gAATGTTGCCTGTGGATGTTTTGCGGTATTGAGGAAATCTGCACTGCGAAGATGTTTAt > 1:3441264/1‑59 (MQ=255)
gAATGTTGCCTGTGGATGTTTTGCGGTATTGAGGAAATCTGCACTGCGAAGATGTTTAt > 1:55913/1‑59 (MQ=255)
gAATGTTGCCTGTGGATGTTTTGCGGTATTGAGGAAATCTGCACTGCGAAGATGTTTAt > 1:2713551/1‑59 (MQ=255)
gAATGTTGCCTGTGGATGTTTTGCGGTATTGAGGAAATCTGCACTGCGAAGATGTTTAt > 1:2464745/1‑59 (MQ=255)
gAATGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTGCACTGCGAAGATGTTTATCGCGTTCgg > 1:1692551/1‑68 (MQ=255)
gAATGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTGCACTGCGAAGATGTTTATCGCGTTCgg > 1:4597172/1‑68 (MQ=255)
gAATGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTGCACTGCGAAGATGTTTATCGCGTTCgg > 1:2630899/1‑68 (MQ=255)
aaTGTTGCCTGTGGATGTTTTGCGGTATTGAGGAAATCTGCACTGCGAAGATGTTTATCGCGTTCGGCGTg < 1:2010665/71‑1 (MQ=255)
aaTGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTGCACTGCGAAGATGTTTATCGCGTTCGGCGt < 1:1122831/70‑1 (MQ=255)
aaTGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTGCACTGCGAAGATGTTTATCGCGTTCGGCGt < 1:3878876/70‑1 (MQ=255)
aaTGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTGCACTGCGAAGATGTTTATCGCGTTCGGCGt < 1:2640879/70‑1 (MQ=255)
aaTGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTGCACTGCGAAGATGTTTATCGCGTTCGGCGt < 1:4458898/70‑1 (MQ=255)
aaTGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTGCACTGCGAAGATGTTTATCGCGTTCGGCGt > 1:1448243/1‑70 (MQ=255)
aaTGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTGCACTGCGAAGATGTTTATCGCGTTCGGCGTg < 1:999372/71‑1 (MQ=255)
aaTGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTGCACTGCGAAGATGTTTATCGCGTTCGGCGTg < 1:3731636/71‑1 (MQ=255)
aaTGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTGCACTGCGAAGATGTTTATCGCGTTCGGCGTg < 1:1366492/71‑1 (MQ=255)
aTGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTGCACTGCGAAGATGTTTATCGCGTTCGGCGTGa > 1:867164/1‑71 (MQ=255)
tGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTGCACTGCGAAGATGt < 1:2044292/52‑1 (MQ=255)
ttGCCTGTGGATGTTTTGCGGTATTGAGGAAATCTGCACTGCGAAGATGTTTATCGCGTTCGGCGTGa > 1:2420128/1‑68 (MQ=255)
ttGCCTGTGGATGTTTTGCGGTATTGAGGAAATCTGCACTGCGAAGATGTTTATCGCGTTCGGCGTGAt > 1:2293915/1‑69 (MQ=255)
ttGCCTGTGGATGTTTTGCGGTATTGAGGAAATCTGCACTGCGAAGATGTTTATCGCGTTCGGCGTGAt > 1:951578/1‑69 (MQ=255)
ttGCCTGTGGATATTTTGCGGTATTGAGGAAATCTGCACTGCGAAGATGTTTATCGCGTTCGGCGt < 1:2280829/66‑1 (MQ=255)
ttGCCTGTGGATATTTTGCGGTATTGAGGAAATCTGCACTGCGAAGATGTTTATCGCGTTCGGCGTGAt > 1:769369/1‑69 (MQ=255)
atatTTTGCGGTATTGAGGAAATCTGCACTGCGAAGATGTTTATCGCGTTCGGCGTGATTAGTATCGACGc > 1:2360724/1‑71 (MQ=255)
atTTTGCGGTATTGAGGAAATCTGCACTGCGAAGATGTTTATCGCGTTCGGCGTGATTAGTATCGACGCtg > 1:3213359/1‑71 (MQ=255)
atTTTGCGGTATTGAGGAAATCTGCACTGCGAAGATGTTTATCGCGTTCGGCGTGATTAGTATCGACGCtg > 1:3914724/1‑71 (MQ=255)
|
AGATCGCCGGTAATATCCAGTTCGTCACCGTCTTTCTTCACGCTGGTGGAGGTGAATGTTGCCTGTGGATATTTTGCGGTATTGAGGAAATCTGCACTGCGAAGATGTTTATCGCGTTCGGCGTGATTAGTATCGACGCTG > minE/708931‑709071
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
