mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 13,094 | A→T | 6.0% | D311V (GAT→GTT) | dnaK → | chaperone Hsp70, co‑chaperone with DnaJ |
| RA | 17,199 | G→T | 12.5% | intergenic (+3/‑57) | nhaA → / → nhaR | sodium‑proton antiporter/DNA‑binding transcriptional activator |
| RA | 21,090 | A→G | 14.6% | D341G (GAC→GGC) | ileS → | isoleucyl‑tRNA synthetase |
| RA | 56,544 | C→T | 9.4% | F131F (TTC→TTT) | yabP → | hypothetical protein |
| RA | 120,663 | C→T | 17.1% | C181Y (TGC→TAC) | speE ← | spermidine synthase |
| RA | 139,335 | G→A | 9.0% | P278S (CCG→TCG) | htrE ← | predicted outer membrane usher protein |
| RA | 145,530 | T→A | 14.3% | T233S (ACA→TCA) | sfsA ← | predicted DNA‑binding transcriptional regulator |
| RA | 149,587 | T→C | 13.9% | Y40H (TAT→CAT) | mrcB → | fused glycosyl transferase and transpeptidase |
| RA | 151,149 | C→T | 11.2% | S560S (AGC→AGT) | mrcB → | fused glycosyl transferase and transpeptidase |
| RA | 168,409 | G→C | 7.4% | intergenic (‑78/‑290) | map ← / → rpsB | methionine aminopeptidase/30S ribosomal subunit protein S2 |
| RA | 168,415 | C→G | 6.1% | intergenic (‑84/‑284) | map ← / → rpsB | methionine aminopeptidase/30S ribosomal subunit protein S2 |
| RA | 168,421 | G→C | 6.7% | intergenic (‑90/‑278) | map ← / → rpsB | methionine aminopeptidase/30S ribosomal subunit protein S2 |
| RA | 202,703 | G→A | 100% | noncoding (108/1542 nt) | rrsH → | 16S ribosomal RNA |
| RA | 204,511 | C→T | 100% | intergenic (+111/‑73) | alaV → / → rrlH | tRNA‑Ala/23S ribosomal RNA |
| RA | 204,556 | A→G | 100% | intergenic (+156/‑28) | alaV → / → rrlH | tRNA‑Ala/23S ribosomal RNA |
| RA | 214,925 | A→C | 52.9% | D12A (GAT→GCT) | dnaQ → | DNA polymerase III epsilon subunit |
| RA | 214,931 | A→C | 54.0% | E14A (GAA→GCA) | dnaQ → | DNA polymerase III epsilon subunit |
| RA | 217,903 | A→G | 8.5% | S2S (AGT→AGC) | yafU ← | predicted inner membrane protein |
| RA | 232,790 | G→T | 5.6% | intergenic (‑29/+141) | hemB ← / ← ykiB | porphobilinogen synthase/hypothetical protein |
| RA | 406,585 | A→G | 12.3% | D8D (GAT→GAC) | ybeB ← | hypothetical protein |
| RA | 415,949 | C→G | 5.0% | S257T (AGC→ACC) ‡ | ybeZ ← | hypothetical protein with nucleoside triphosphate hydrolase domain |
| RA | 415,950 | T→C | 5.1% | S257G (AGC→GGC) ‡ | ybeZ ← | hypothetical protein with nucleoside triphosphate hydrolase domain |
| RA | 415,951 | C→T | 5.0% | E256E (GAG→GAA) | ybeZ ← | hypothetical protein with nucleoside triphosphate hydrolase domain |
| RA | 415,960 | A→G | 6.0% | I253I (ATT→ATC) | ybeZ ← | hypothetical protein with nucleoside triphosphate hydrolase domain |
| RA | 422,197 | G→A | 6.4% | F94F (TTC→TTT) | asnB ← | asparagine synthetase B |
| RA | 530,638 | T→C | 12.4% | E105E (GAA→GAG) | ybhP ← | predicted DNase |
| RA | 539,433 | T→C | 7.5% | V132V (GTA→GTG) | dps ← | Fe‑binding and storage protein |
| RA | 705,870 | A→G | 30.8% | intergenic (‑367/+128) | ymcC ← / ← serX | predicted outer membrane lipoprotein/tRNA‑Ser |
| RA | 709,001 | A→G | 9.4% | Y102H (TAT→CAT) | yceI ← | hypothetical protein |
| RA | 746,106 | G→A | 11.7% | G256D (GGC→GAC) | ndh → | respiratory NADH dehydrogenase 2/cupric reductase |
| RA | 750,056 | T→A | 9.7% | D1055V (GAT→GTT) | mfd ← | transcription‑repair coupling factor |
| RA | 753,855 | T→C | 6.2% | N189S (AAC→AGC) | ycfT ← | predicted inner membrane protein |
| RA | 762,795 | C→T | 9.1% | V27V (GTG→GTA) | potC ← | polyamine transporter subunit |
| RA | 778,651 | C→G | 5.7% | intergenic (‑357/‑163) | minC ← / → ycgJ | cell division inhibitor/hypothetical protein |
| RA | 778,653 | T→G | 5.1% | intergenic (‑359/‑161) | minC ← / → ycgJ | cell division inhibitor/hypothetical protein |
| RA | 828,622 | T→C | 7.2% | S226G (AGT→GGT) | narX ← | sensory histidine kinase in two‑component regulatory system with NarL |
| RA | 863,791 | A→C | 6.5% | Y31S (TAT→TCT) ‡ | yciQ → | predicted inner membrane protein |
| RA | 863,792 | T→A | 6.3% | Y31* (TAT→TAA) ‡ | yciQ → | predicted inner membrane protein |
| RA | 863,793 | G→T | 8.0% | E32* (GAA→TAA) | yciQ → | predicted inner membrane protein |
| RA | 872,042 | C→T | 5.2% | H681Y (CAT→TAT) | topA → | DNA topoisomerase I, omega subunit |
| RA | 874,334 | T→C | 6.3% | pseudogene (221/299 nt) pseudogene (111/189 nt) |
yciX → yciX → |
ECK1270:JW5198+JW5199:b4574; hypothetical protein ECK1270:JW5199:b4523; hypothetical protein, C‑ter fragment |
| RA | 898,949 | A→G | 7.1% | N70S (AAC→AGC) | pspB → | transcriptional regulator of psp operon |
| RA | 965,646 | C→T | 8.9% | G83D (GGC→GAC) | ydeM ← | conserved hypothetical protein |
| RA | 974,093 | A→G | 8.2% | T290A (ACG→GCG) | lsrB → | AI2 transporter |
| RA | 986,858 | G→A | 5.0% | A367T (GCA→ACA) | ynfE → | oxidoreductase subunit |
| RA | 1,008,960 | G→A | 5.0% | L98L (CTG→CTA) | folM → | dihydrofolate reductase isozyme |
| RA | 1,036,505 | G→A | 100% | A632A (GCG→GCA) | rsxC → | fused predicted 4Fe‑4S ferredoxin‑type protein |
| RA | 1,056,210 | T→C | 8.5% | L58S (TTA→TCA) | rnt → | ribonuclease T (RNase T) |
| RA | 1,091,167 | T→C | 8.4% | E178E (GAA→GAG) | sufB ← | component of SufBCD complex |
| RA | 1,093,658 | T→C | 20.8% | T907A (ACA→GCA) | ydiJ ← | predicted FAD‑linked oxidoreductase |
| RA | 1,139,620 | T→C | 24.5% | S332S (AGT→AGC) | ydjN → | predicted transporter |
| RA | 1,187,540 | G→A | 12.5% | G10R (GGG→AGG) | yeaI → | predicted diguanylate cyclase |
| RA | 1,192,955 | T→G | 5.5% | E236D (GAA→GAC) ‡ | fadD ← | acyl‑CoA synthetase |
| RA | 1,192,956 | T→A | 5.5% | E236V (GAA→GTA) ‡ | fadD ← | acyl‑CoA synthetase |
| RA | 1,219,094 | C→T | 18.0% | A119A (GCG→GCA) | proQ ← | predicted structural transport element |
| RA | 1,225,925 | T→C | 8.6% | L77P (CTT→CCT) | yebV → | hypothetical protein |
| RA | 1,283,882 | T→C | 11.0% | T1887T (ACT→ACC) | yeeJ → | adhesin |
| RA | 1,368,720 | T→C | 10.4% | N232S (AAC→AGC) | dusC ← | tRNA‑dihydrouridine synthase C |
| RA | 1,471,058 | C→A | 5.2% | G222C (GGT→TGT) | yfaL ← | adhesin |
| RA | 1,483,542 | C→T | 8.0% | A157V (GCA→GTA) | glpC → | sn‑glycerol‑3‑phosphate dehydrogenase (anaerobic), small subunit |
| RA | 1,515,612 | G→A | 10.9% | S135L (TCA→TTA) | cvpA ← | membrane protein required for colicin V production |
| RA | 1,613,318 | A→G | 7.0% | F353S (TTC→TCC) | eutH ← | predicted inner membrane protein |
| RA | 1,618,811 | C→T | 5.9% | V321V (GTG→GTA) | eutI ← | predicted phosphotransacetylase subunit |
| RA | 1,694,162:1 | +C | 8.0% | coding (56/1215 nt) | iscS ← | cysteine desulfurase (tRNA sulfurtransferase), PLP‑dependent |
| RA | 1,694,168 | G→C | 7.2% | P17R (CCG→CGG) | iscS ← | cysteine desulfurase (tRNA sulfurtransferase), PLP‑dependent |
| RA | 1,694,172 | C→G | 7.3% | D16H (GAC→CAC) | iscS ← | cysteine desulfurase (tRNA sulfurtransferase), PLP‑dependent |
| RA | 1,694,173 | C→G | 7.3% | V15V (GTG→GTC) | iscS ← | cysteine desulfurase (tRNA sulfurtransferase), PLP‑dependent |
| RA | 1,695,520 | G→A | 6.9% | Q164* (CAG→TAG) | yfhQ ← | predicted methyltransferase |
| RA | 1,706,900 | T→C | 9.9% | I159V (ATT→GTT) | yphB ← | conserved hypothetical protein |
| RA | 1,709,579 | A→G | 8.9% | V490A (GTC→GCC) | yphE ← | fused predicted sugar transporter subunits and ATP‑binding components of ABC superfamily |
| RA | 1,735,602 | T→C | 11.0% | E157E (GAA→GAG) | era ← | membrane‑associated, 16S rRNA‑binding GTPase |
| RA | 1,744,552 | G→A | 9.6% | V483I (GTC→ATC) | nadB → | quinolinate synthase, L‑aspartate oxidase (B protein) subunit |
| RA | 1,763,540 | A→G | 9.3% | noncoding (304/1542 nt) | rrsG ← | 16S ribosomal RNA |
| RA | 1,763,556 | T→C | 48.8% | noncoding (288/1542 nt) | rrsG ← | 16S ribosomal RNA |
| RA | 1,763,558 | G→C | 10.2% | noncoding (286/1542 nt) | rrsG ← | 16S ribosomal RNA |
| RA | 1,763,559 | G→T | 6.7% | noncoding (285/1542 nt) | rrsG ← | 16S ribosomal RNA |
| RA | 1,763,580 | G→T | 9.1% | noncoding (264/1542 nt) | rrsG ← | 16S ribosomal RNA |
| RA | 1,763,594 | A→T | 6.5% | noncoding (250/1542 nt) | rrsG ← | 16S ribosomal RNA |
| RA | 1,763,636 | A→G | 17.6% | noncoding (208/1542 nt) | rrsG ← | 16S ribosomal RNA |
| RA | 1,804,090 | G→A | 70.7% | G52G (GGG→GGA) | mprA → | DNA‑binding transcriptional regulator |
| RA | 1,813,392 | G→A | 15.1% | R595R (CGC→CGT) | alaS ← | alanyl‑tRNA synthetase |
| RA | 1,824,288 | G→A | 8.1% | D452D (GAC→GAT) | hypF ← | carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases |
| RA | 1,892,019:1 | +GC | 100% | intergenic (‑437/+54) | gudP ← / ← ygdL | predicted D‑glucarate transporter/conserved hypothetical protein |
| RA | 1,968,626 | A→G | 6.7% | S2P (TCC→CCC) | tktA ← | transketolase 1, thiamin‑binding |
| RA | 1,976,997 | G→A | 6.0% | L83L (TTG→TTA) | sprT → | conserved hypothetical protein |
| RA | 2,012,040 | C→T | 8.4% | T64T (ACG→ACA) | yqhA ← | conserved inner membrane protein |
| RA | 2,012,045 | T→C | 9.5% | M63V (ATG→GTG) | yqhA ← | conserved inner membrane protein |
| RA | 2,061,532 | C→A | 5.0% | D13E (GAC→GAA) | rpsU → | 30S ribosomal subunit protein S21 |
| RA | 2,061,535 | A→C | 5.3% | V14V (GTA→GTC) | rpsU → | 30S ribosomal subunit protein S21 |
| RA | 2,061,538 | T→A | 5.4% | A15A (GCT→GCA) | rpsU → | 30S ribosomal subunit protein S21 |
| RA | 2,061,539 | C→A | 5.4% | L16M (CTG→ATG) | rpsU → | 30S ribosomal subunit protein S21 |
| RA | 2,061,553 | G→A | 5.7% | K20K (AAG→AAA) | rpsU → | 30S ribosomal subunit protein S21 |
| RA | 2,061,556 | T→C | 6.1% | R21R (CGT→CGC) | rpsU → | 30S ribosomal subunit protein S21 |
| RA | 2,061,557 | T→A | 6.1% | S22T (TCC→ACC) | rpsU → | 30S ribosomal subunit protein S21 |
| RA | 2,061,560 | T→A | 5.4% | C23S (TGC→AGC) ‡ | rpsU → | 30S ribosomal subunit protein S21 |
| RA | 2,061,561 | G→T | 5.4% | C23F (TGC→TTC) ‡ | rpsU → | 30S ribosomal subunit protein S21 |
| RA | 2,061,569 | G→A | 6.6% | A26T (GCA→ACA) ‡ | rpsU → | 30S ribosomal subunit protein S21 |
| RA | 2,061,571 | A→T | 6.8% | A26A (GCA→GCT) ‡ | rpsU → | 30S ribosomal subunit protein S21 |
| RA | 2,061,575 | G→C | 9.5% | V28L (GTT→CTT) ‡ | rpsU → | 30S ribosomal subunit protein S21 |
| RA | 2,061,577 | T→G | 7.6% | V28V (GTT→GTG) ‡ | rpsU → | 30S ribosomal subunit protein S21 |
| RA | 2,061,581 | G→A | 6.8% | A30T (GCG→ACG) | rpsU → | 30S ribosomal subunit protein S21 |
| RA | 2,076,795 | C→T | 7.4% | H121Y (CAT→TAT) | ebgC → | cryptic beta‑D‑galactosidase, beta subunit |
| RA | 2,087,666 | C→T | 7.9% | T54I (ACC→ATC) | yhaH → | predicted inner membrane protein |
| RA | 2,134,912 | C→T | 6.9% | L473L (CTG→CTA) | pnp ← | polynucleotide phosphorylase/polyadenylase |
| RA | 2,184,264 | G→C | 8.7% | V1514L (GTG→CTG) | gltB → | glutamate synthase, large subunit |
| RA | 2,190,181 | T→A | 6.8% | L11I (TTA→ATA) ‡ | dcuD → | predicted transporter |
| RA | 2,190,183 | A→T | 6.8% | L11F (TTA→TTT) ‡ | dcuD → | predicted transporter |
| RA | 2,190,185 | T→A | 6.5% | I12N (ATT→AAT) | dcuD → | predicted transporter |
| RA | 2,197,282 | G→A | 7.3% | D420N (GAT→AAT) | degQ → | serine endoprotease, periplasmic |
| RA | 2,197,287 | G→A | 7.5% | R421R (CGG→CGA) | degQ → | serine endoprotease, periplasmic |
| RA | 2,197,407 | C→T | 6.3% | intergenic (+15/‑75) | degQ → / → degS | serine endoprotease, periplasmic/serine endoprotease, periplasmic |
| RA | 2,239,028 | C→T | 7.8% | D14N (GAC→AAC) | zraR ← | fused DNA‑binding response regulator in two‑component regulatory system with ZraS |
| RA | 2,281,121 | A→G | 12.6% | F67S (TTT→TCT) | fabR ← | DNA‑binding transcriptional repressor |
| RA | 2,288,799 | A→T | 8.0% | intergenic (+108/‑490) | argE → / → ppc | acetylornithine deacetylase/phosphoenolpyruvate carboxylase |
| RA | 2,335,293 | T→C | 13.2% | I914I (ATT→ATC) | fdoG → | formate dehydrogenase‑O, large subunit |
| RA | 2,355,216 | T→C | 14.9% | Y328C (TAT→TGT) | yihE ← | predicted kinase |
| RA | 2,355,219 | A→C | 16.2% | M327R (ATG→AGG) | yihE ← | predicted kinase |
| RA | 2,359,227 | Δ1 bp | 6.2% | noncoding (1868/2905 nt) | rrlA ← | 23S ribosomal RNA |
| RA | 2,359,867 | G→A | 42.0% | noncoding (1228/2905 nt) | rrlA ← | 23S ribosomal RNA |
| RA | 2,359,876 | C→T | 38.8% | noncoding (1219/2905 nt) | rrlA ← | 23S ribosomal RNA |
| RA | 2,391,412 | A→G | 7.5% | R446R (CGT→CGC) | recQ ← | ATP‑dependent DNA helicase |
| RA | 2,429,321 | T→C | 5.5% | M88V (ATG→GTG) | wzzE ← | Entobacterial Common Antigen (ECA) polysaccharide chain length modulation protein |
| RA | 2,464,993 | C→G | 8.5% | A217A (GCC→GCG) | atpB → | F0 sector of membrane‑bound ATP synthase, subunit a |
| RA | 2,464,999 | G→A | 8.5% | E219E (GAG→GAA) | atpB → | F0 sector of membrane‑bound ATP synthase, subunit a |
| RA | 2,465,005 | T→C | 8.7% | I221I (ATT→ATC) | atpB → | F0 sector of membrane‑bound ATP synthase, subunit a |
| RA | 2,465,008 | C→T | 8.8% | F222F (TTC→TTT) | atpB → | F0 sector of membrane‑bound ATP synthase, subunit a |
| RA | 2,465,011 | T→C | 8.5% | I223I (ATT→ATC) | atpB → | F0 sector of membrane‑bound ATP synthase, subunit a |
| RA | 2,465,020 | T→G | 8.0% | A226A (GCT→GCG) | atpB → | F0 sector of membrane‑bound ATP synthase, subunit a |
| RA | 2,465,029 | G→A | 7.5% | L229L (TTG→TTA) | atpB → | F0 sector of membrane‑bound ATP synthase, subunit a |
| RA | 2,469,966 | T→G | 5.2% | L316L (CTT→CTG) | atpD → | F1 sector of membrane‑bound ATP synthase, beta subunit |
| RA | 2,469,972 | A→G | 5.4% | A318A (GCA→GCG) | atpD → | F1 sector of membrane‑bound ATP synthase, beta subunit |
| RA | 2,469,978 | G→C | 5.6% | V320V (GTG→GTC) | atpD → | F1 sector of membrane‑bound ATP synthase, beta subunit |
| RA | 2,469,985 | A→T | 5.2% | S323C (AGC→TGC) ‡ | atpD → | F1 sector of membrane‑bound ATP synthase, beta subunit |
| RA | 2,469,986 | G→C | 5.1% | S323T (AGC→ACC) ‡ | atpD → | F1 sector of membrane‑bound ATP synthase, beta subunit |
| RA | 2,469,991 | C→G | 5.3% | Q325E (CAG→GAG) ‡ | atpD → | F1 sector of membrane‑bound ATP synthase, beta subunit |
| RA | 2,469,993 | G→C | 5.6% | Q325H (CAG→CAC) ‡ | atpD → | F1 sector of membrane‑bound ATP synthase, beta subunit |
| RA | 2,470,002 | T→G | 5.8% | S328S (TCT→TCG) | atpD → | F1 sector of membrane‑bound ATP synthase, beta subunit |
| RA | 2,489,124 | G→A | 5.2% | T41T (ACG→ACA) | dnaN → | DNA polymerase III, beta subunit |
| RA | 2,526,945 | C→T | 8.4% | E13K (GAG→AAG) | ttk ← | division inhibitor |
| RA | 2,546,001 | C→T | 12.2% | M182I (ATG→ATA) | rfaF ← | ADP‑heptose:LPS heptosyltransferase II |
| RA | 2,549,980 | A→G | 6.0% | T353A (ACC→GCC) | kbl → | glycine C‑acetyltransferase |
| RA | 2,550,360 | A→G | 5.2% | K77K (AAA→AAG) | tdh → | threonine 3‑dehydrogenase, NAD(P)‑binding |
| RA | 2,589,325 | A→G | 16.0% | intergenic (‑1/+798) | gadE ← / ← hdeD | DNA‑binding transcriptional activator/acid‑resistance membrane protein |
| RA | 2,605,853 | T→C | 7.1% | V14V (GTT→GTC) | yhiO → | predicted universal stress (ethanol tolerance) protein B |
| RA | 2,625,149 | G→A | 14.3% | R16H (CGT→CAT) | ftsX → | predicted transporter subunit |
| RA | 2,706,538 | T→C | 5.8% | S168P (TCT→CCT) | rpe → | D‑ribulose‑5‑phosphate 3‑epimerase |
| RA | 2,714,239 | C→A | 8.4% | R41L (CGC→CTC) | nirB ← | nitrite reductase, large subunit, NAD(P)H‑binding |
| RA | 2,727,940 | T→C | 5.7% | F59F (TTT→TTC) | kefB → | potassium:proton antiporter |
| RA | 2,728,325 | C→T | 29.0% | L188L (CTG→TTG) | kefB → | potassium:proton antiporter |
| RA | 2,736,671 | T→C | 8.4% | F605F (TTT→TTC) | fusA → | protein chain elongation factor EF‑G |
| RA | 2,811,028 | G→A | 13.1% | A573V (GCA→GTA) | uvrA ← | ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC |
| RA | 2,816,537 | T→G | 7.6% | R65R (CGT→CGG) | soxR → | DNA‑binding transcriptional dual regulator, Fe‑S center for redox‑sensing |
| RA | 2,816,539 | T→A | 7.6% | I66N (ATT→AAT) | soxR → | DNA‑binding transcriptional dual regulator, Fe‑S center for redox‑sensing |
| RA | 2,816,542 | G→C | 7.0% | G67A (GGC→GCC) | soxR → | DNA‑binding transcriptional dual regulator, Fe‑S center for redox‑sensing |
| RA | 2,816,545 | T→A | 7.2% | I68N (ATT→AAT) | soxR → | DNA‑binding transcriptional dual regulator, Fe‑S center for redox‑sensing |
| RA | 2,816,547 | C→A | 6.9% | P69T (CCG→ACG) | soxR → | DNA‑binding transcriptional dual regulator, Fe‑S center for redox‑sensing |
| RA | 2,892,177 | G→A | 12.6% | D278N (GAC→AAC) | ytfQ → | predicted sugar transporter subunit |
| RA | 2,948,260 | G→A | 14.3% | intergenic (‑20/+118) | yjjB ← / ← yjjP | conserved inner membrane protein/predicted inner membrane protein |
| RA | 2,973,690 | A→T | 11.3% | K29I (AAA→ATA) | nadR → | bifunctional DNA‑binding transcriptional repressor and NMN adenylyltransferase |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 37564 = | 42 (0.570) | 5 (0.070) | 4/92 | NT | 11.3% | coding (501/1143 nt) | caiA | crotonobetaine reductase subunit II, FAD‑binding |
| ? | minE | 37583 = | 40 (0.590) | coding (482/1143 nt) | caiA | crotonobetaine reductase subunit II, FAD‑binding | |||||
| * | ? | minE | 202689 = | 0 (0.000) | 8 (0.140) +GGAGCAAGCTC |
3/78 | NT | 100% | noncoding (94/1542 nt) | rrsH | 16S ribosomal RNA |
| ? | minE | = 2763338 | 0 (0.000) | noncoding (76/1542 nt) | rrsE | 16S ribosomal RNA | |||||
| * | ? | minE | = 204740 | NA (NA) | 6 (0.100) | 4/84 | NT | NA | noncoding (157/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | minE | = 204751 | NA (NA) | noncoding (168/2904 nt) | rrlH | 23S ribosomal RNA | |||||
| * | ? | minE | = 205293 | NA (NA) | 5 (0.070) | 3/92 | NT | NA | noncoding (710/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | minE | = 205316 | NA (NA) | noncoding (733/2904 nt) | rrlH | 23S ribosomal RNA | |||||
| * | ? | minE | = 206447 | NA (NA) | 14 (0.200) +GC |
6/96 | NT | NA | noncoding (1864/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | minE | 206459 = | NA (NA) | noncoding (1876/2904 nt) | rrlH | 23S ribosomal RNA | |||||
| * | ? | minE | 206841 = | NA (NA) | 10 (0.160) | 3/86 | NT | NA | noncoding (2258/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | minE | 206866 = | NA (NA) | noncoding (2283/2904 nt) | rrlH | 23S ribosomal RNA | |||||
| * | ? | minE | = 215622 | 52 (0.710) | 22 (0.670) +27 bp |
17/46 | NT | 39.4% | coding (732/732 nt) | dnaQ | DNA polymerase III epsilon subunit |
| ? | minE | 2705182 = | 99 (1.340) | intergenic (+106/‑1) | damX/dam | hypothetical protein/DNA adenine methylase | |||||
| * | ? | minE | 384735 = | 100 (1.360) | 8 (0.130) | 3/84 | NT | 11.2% | intergenic (+125/‑56) | ybdB/cstA | conserved hypothetical protein/carbon starvation protein |
| ? | minE | 384764 = | 43 (0.700) | intergenic (+154/‑27) | ybdB/cstA | conserved hypothetical protein/carbon starvation protein | |||||
| * | ? | minE | 391476 = | 44 (0.600) | 6 (0.090) | 3/94 | NT | 11.0% | intergenic (‑10/+137) | ybdN/ybdO | conserved hypothetical protein/predicted DNA‑binding transcriptional regulator |
| ? | minE | 391506 = | 56 (0.810) | intergenic (‑40/+107) | ybdN/ybdO | conserved hypothetical protein/predicted DNA‑binding transcriptional regulator | |||||
| * | ? | minE | = 432867 | 85 (1.150) | 7 (0.100) | 3/92 | NT | 7.3% | coding (1233/1407 nt) | ybfM | predicted outer membrane porin |
| ? | minE | = 432885 | 99 (1.460) | coding (1251/1407 nt) | ybfM | predicted outer membrane porin | |||||
| * | ? | minE | 436259 = | 57 (0.770) | 73 (1.080) | 36/92 | NT | 54.8% | intergenic (‑156/‑29) | ybfF/seqA | conserved hypothetical protein/regulatory protein for replication initiation |
| ? | minE | = 2706018 | 68 (1.010) | coding (836/837 nt) | dam | DNA adenine methylase | |||||
| * | ? | minE | = 436833 | 98 (1.330) | 101 (1.370) | 44/100 | NT | 54.4% | coding (546/546 nt) | seqA | regulatory protein for replication initiation |
| ? | minE | 1803907 = | 71 (0.960) | intergenic (+63/‑28) | ygaH/mprA | predicted inner membrane protein/DNA‑binding transcriptional regulator | |||||
| * | ? | minE | 775766 = | 40 (0.540) | 8 (0.120) | 4/92 | NT | 16.9% | intergenic (+138/+727) | icd/minE | isocitrate dehydrogenase, specific for NADP+/cell division topological specificity factor |
| ? | minE | 775793 = | 42 (0.620) | intergenic (+165/+700) | icd/minE | isocitrate dehydrogenase, specific for NADP+/cell division topological specificity factor | |||||
| * | ? | minE | 800496 = | 80 (1.090) | 5 (0.080) | 3/90 | NT | 6.9% | coding (833/1419 nt) | dhaH | fused predicted dihydroxyacetone‑specific PTS enzyme HPr component and EI component |
| ? | minE | 800525 = | 63 (0.950) | coding (804/1419 nt) | dhaH | fused predicted dihydroxyacetone‑specific PTS enzyme HPr component and EI component | |||||
| * | ? | minE | = 1008484 | 86 (1.170) | 7 (0.100) | 3/94 | NT | 8.2% | coding (1237/1383 nt) | ydgI | predicted arginine/ornithine antiporter transporter |
| ? | minE | = 1008499 | 75 (1.080) | coding (1252/1383 nt) | ydgI | predicted arginine/ornithine antiporter transporter | |||||
| * | ? | minE | = 1073221 | 81 (1.100) | 5 (0.070) | 3/92 | NT | 6.4% | coding (598/1257 nt) | ydhQ | conserved hypothetical protein |
| ? | minE | = 1073233 | 72 (1.060) | coding (586/1257 nt) | ydhQ | conserved hypothetical protein | |||||
| * | ? | minE | = 1083647 | 60 (0.810) | 5 (0.080) | 3/88 | NT | 8.2% | coding (259/1413 nt) | pykF | pyruvate kinase I |
| ? | minE | = 1083662 | 59 (0.910) | coding (274/1413 nt) | pykF | pyruvate kinase I | |||||
| * | ? | minE | = 1322402 | 56 (0.760) | 4 (0.060) | 3/92 | NT | 7.2% | coding (532/894 nt) | galF | predicted subunit with GalU |
| ? | minE | = 1322416 | 52 (0.770) | coding (518/894 nt) | galF | predicted subunit with GalU | |||||
| * | ? | minE | 1781664 = | 91 (1.240) | 5 (0.080) | 3/90 | NT | 6.7% | coding (115/1197 nt) | yfjD | predicted inner membrane protein |
| ? | minE | 1781691 = | 57 (0.860) | coding (142/1197 nt) | yfjD | predicted inner membrane protein | |||||
| * | ? | minE | 2156775 = | 53 (0.720) | 4 (0.060) | 3/90 | NT | 8.2% | coding (73/1173 nt) | obgE | GTPase involved in cell partioning and DNA repair |
| ? | minE | 2156803 = | 42 (0.640) | coding (45/1173 nt) | obgE | GTPase involved in cell partioning and DNA repair | |||||
| * | ? | minE | = 2289180 | 79 (1.070) | 4 (0.060) | 3/88 | NT | 6.3% | intergenic (+489/‑109) | argE/ppc | acetylornithine deacetylase/phosphoenolpyruvate carboxylase |
| ? | minE | = 2289203 | 49 (0.760) | intergenic (+512/‑86) | argE/ppc | acetylornithine deacetylase/phosphoenolpyruvate carboxylase | |||||
| * | ? | minE | = 2388794 | 108 (1.470) | 5 (0.070) | 3/92 | NT | 6.2% | coding (650/1023 nt) | pldB | lysophospholipase L(2) |
| ? | minE | = 2388819 | 53 (0.780) | coding (625/1023 nt) | pldB | lysophospholipase L(2) | |||||
| * | ? | minE | 2543149 = | 133 (1.810) | 6 (0.090) | 3/88 | NT | 5.0% | coding (987/1074 nt) | rfaK | lipopolysaccharide core biosynthesis |
| ? | minE | 2543186 = | 110 (1.700) | coding (1024/1074 nt) | rfaK | lipopolysaccharide core biosynthesis | |||||
| * | ? | minE | 2578583 = | 99 (1.340) | 7 (0.100) | 3/94 | NT | 7.4% | coding (82/1398 nt) | yhjA | predicted cytochrome C peroxidase |
| ? | minE | 2578605 = | 82 (1.190) | coding (104/1398 nt) | yhjA | predicted cytochrome C peroxidase | |||||
| * | ? | minE | 2744431 = | 40 (0.540) | 6 (0.090) | 3/90 | NT | 12.9% | coding (174/315 nt) | rplX | 50S ribosomal subunit protein L24 |
| ? | minE | 2744466 = | 45 (0.680) | coding (209/315 nt) | rplX | 50S ribosomal subunit protein L24 | |||||
| * | ? | minE | 2827311 = | 90 (1.220) | 5 (0.080) | 3/88 | NT | 5.5% | coding (939/1116 nt) | dcuA | C4‑dicarboxylate antiporter |
| ? | minE | 2827346 = | 92 (1.420) | coding (904/1116 nt) | dcuA | C4‑dicarboxylate antiporter | |||||
| * | ? | minE | = 2974790 | 67 (0.910) | 5 (0.070) | 3/94 | NT | 7.8% | coding (1186/1233 nt) | nadR | bifunctional DNA‑binding transcriptional repressor and NMN adenylyltransferase |
| ? | minE | = 2974812 | 55 (0.800) | coding (1208/1233 nt) | nadR | bifunctional DNA‑binding transcriptional repressor and NMN adenylyltransferase | |||||