Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R2
|
164 |
48.3 |
4710601 |
85.3% |
4018142 |
55.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
711,161 |
C→T |
intergenic (‑93/+196) |
fur ← / ← fldA |
DNA‑binding transcriptional dual regulator/flavodoxin 1 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 711,161 | 0 | C | T | 100.0%
| 113.9
/ NA
| 35 | intergenic (‑93/+196) | fur/fldA | DNA‑binding transcriptional dual regulator/flavodoxin 1 |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (20/15); total (20/15) |
ATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCACGCCTAAATGAAAACCACAAGTCCCTGGCAAATATTGTTAATAAAAACGTGGCACA > W3110S.gb/711103‑711216
|
aTTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCATGc > 1:1467741/1‑61 (MQ=255)
aTTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCATGc > 1:230455/1‑61 (MQ=255)
aTTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCATGc > 1:2018840/1‑61 (MQ=255)
gaagTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCATGCCTAAATGa < 1:502605/62‑1 (MQ=255)
ttGCTCTTGAGATAATGCGTATCATTATAGAATTGCCATGCCTAAATGAAAACCACAAGTcc > 1:587066/1‑62 (MQ=255)
ttGCTCTTGAGATAATGCGTATCATTATAGAATTGCCATGCCTAAATGAAAACCACAAGTcc > 1:174915/1‑62 (MQ=255)
ttGCTCTTGAGATAATGCGTATCATTATAGAATTGCCATGCCTAAATGAAAACCACAAGTcc > 1:2658229/1‑62 (MQ=255)
ttGCTCTTGAGATAATGCGTATCATTATAGAATTGCCATGCCTAAATGAAAACCACAAGTcc > 1:259486/1‑62 (MQ=255)
ttGCTCTTGAGATAATGCGTATCATTATAGAATTGCCATGCCTAAATGAAAACCACAAGTcc > 1:2084688/1‑62 (MQ=255)
ttGCTCTTGAGATAATGCGTATCATTATAGAATTGCCATGCCTAAATGAAAACCACAAGTcc > 1:1898569/1‑62 (MQ=255)
tGCTCTTGAGATAATGCGTATCATTATAGAATTGCCATGCCTAAATGAAAACCACAAGTccc < 1:847817/62‑1 (MQ=255)
gCTCTTGAGATAATGCGTATCATTATAGAATTGCCATGCCTAAATGAAAACCACAAGTCCCt > 1:2022350/1‑62 (MQ=255)
gCTCTTGAGATAATGCGTATCATTATAGAATTGCCATGCCTAAATGAAAACCACAAGTCCCt > 1:462480/1‑62 (MQ=255)
gCTCTTGAGATAATGCGTATCATTATAGAATTGCCATGCCTAAATGAAAACCACAAGTCCCt > 1:4525279/1‑62 (MQ=255)
ctTGAGATAATGCGTATCATTATAGAATTGCCATGCCTAAATGAAAACCACAAGTc > 1:3452888/1‑56 (MQ=255)
gCGTATCATTATAGAATTGCCATGCCTAAATGAAAACCACAAGTCCCTGGCAAATATTGTta < 1:1572557/62‑1 (MQ=255)
gCGTATCATTATAGAATTGCCATGCCTAAATGAAAACCACAAGTCCCTGGCAAATATTGTta < 1:720043/62‑1 (MQ=255)
gCGTATCATTATAGAATTGCCATGCCTAAATGAAAACCACAAGTCCCTGGCAAATATTGTta < 1:3810874/62‑1 (MQ=255)
gCGTATCATTATAGAATTGCCATGCCTAAATGAAAACCACAAGTCCCTGGCAAATATTGTta < 1:2327305/62‑1 (MQ=255)
gCGTATCATTATAGAATTGCCATGCCTAAATGAAAACCACAAGTCCCTGGCAAATATTGTta < 1:1529464/62‑1 (MQ=255)
aTTATAGAATTGCCATGCCTAAATGAAAACCACAAGTCCCTGGCAAATATTGTTAATaaaaa > 1:2872985/1‑62 (MQ=255)
tataGAATTGCCATGCCTAAATGAAAACCACAAGTCCCTGGCAAATATTGTTAATAAAAACg < 1:3559151/62‑1 (MQ=255)
ataGAATTGCCATGCCTAAATGAAAACCACAAGTCCCTGGCAAATATTGTTAATAAAAACg < 1:160651/61‑1 (MQ=255)
aGAATTGCCATGCCTAAATGAAAACCACAAGTCCCTGGCAAATATTGTTAATAAAAACGTgg > 1:3415989/1‑62 (MQ=255)
aGAATTGCCATGCCTAAATGAAAACCACAAGTCCCTGGCAAATATTGTTAATAAAAACGTgg > 1:622733/1‑62 (MQ=255)
aGAATTGCCATGCCTAAATGAAAACCACAAGTCCCTGGCAAATATTGTTAATAAAAACGTgg > 1:415984/1‑62 (MQ=255)
aGAATTGCCATGCCTAAATGAAAACCACAAGTCCCTGGCAAATATTGTTAATAAAAACGTgg > 1:2191168/1‑62 (MQ=255)
aGAATTGCCATGCCTAAATGAAAACCACAAGTCCCTGGCAAATATTGTTAATAAAAACGTgg > 1:1877335/1‑62 (MQ=255)
aGAATTGCCATGCCTAAATGAAAACCACAAGTCCCTGGCAAATATTGTTAATAAAAACGTgg > 1:1610479/1‑62 (MQ=255)
aaTTGCCATGCCTAAATGAAAACCACAAGTCCCTGGC‑AATATTGTTAATAAAAACGTGGca < 1:1952423/61‑1 (MQ=39)
aTTGCCATGCCTAAATGAAAACCACAAGTCCCTGGCAAATATTGTTAATAAAAACGTGGca < 1:1870601/61‑1 (MQ=255)
aTTGCCATGCCTAAATGAAAACCACAAGTCCCTGGCAAATATTGTTAATAAAAACGTGGca < 1:1781224/61‑1 (MQ=255)
ttGCCATGCCTAAATGAAAACCACAAGTCCCTGGCAAATATTGTTAATAAAAACGTGGcaca < 1:3971298/62‑1 (MQ=255)
ttGCCATGCCTAAATGAAAACCACAAGTCCCTGGCAAATATTGTTAATAAAAACGTGGcaca < 1:1264958/62‑1 (MQ=255)
tGCCATGCCTAAATGAAAACCACAAGTCCCTGGCAAATATTGTTAATAAAAACGTGGcaca < 1:2275034/61‑1 (MQ=255)
|
ATTAGAAGAAGTGACAGAATTTGCTCTTGAGATAATGCGTATCATTATAGAATTGCCACGCCTAAATGAAAACCACAAGTCCCTGGCAAATATTGTTAATAAAAACGTGGCACA > W3110S.gb/711103‑711216
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
