Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R2
|
164 |
48.3 |
4710601 |
85.3% |
4018142 |
55.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,364,882 |
G→A |
V142V (GTG→GTA) |
puuC → |
gamma‑Glu‑gamma‑aminobutyraldehyde dehydrogenase, NAD(P)H‑dependent |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,364,882 | 0 | G | A | 100.0%
| 244.6
/ NA
| 73 | V142V (GTG→GTA) | puuC | gamma‑Glu‑gamma‑aminobutyraldehyde dehydrogenase, NAD(P)H‑dependent |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (29/44); total (29/44) |
CGCGGCGCGCGCCATTCGCTGGTACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTGGCGACCACCAGTAGCCATGAGCTGGCGATGATCGTGCGTGAACCGGT > W3110S.gb/1364825‑1364929
|
cgcggcgcgCGCCATTCGCTGGTACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCg > 1:3290684/1‑61 (MQ=255)
cgcggcgcgCGCCATTCGCTGGTACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCg > 1:4164548/1‑61 (MQ=255)
cgcggcgcgCGCCATTCGCTGGTACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCg > 1:1343042/1‑61 (MQ=255)
cgcggcgcgCGCCATTCGCTGGTACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCg > 1:4187738/1‑61 (MQ=255)
cgcggcgcgCGCCATTCGCTGGTACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCg > 1:472979/1‑61 (MQ=255)
cgcggcgcgCGCCATTCGCTGGTACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCg > 1:2000760/1‑61 (MQ=255)
ggcgcgCGCCATTCGCTGGTACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGacca < 1:3194791/62‑1 (MQ=255)
gcgcgcgcCATTCGCTGGTACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGaccac < 1:4492013/62‑1 (MQ=255)
gcgcgcgcCATTCGCTGGTACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGaccac < 1:3025216/62‑1 (MQ=255)
gcgcgcgcCATTCGCTGGTACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGaccac < 1:2869472/62‑1 (MQ=255)
gcgcgcgcCATTCGCTGGTACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGaccac < 1:3936537/62‑1 (MQ=255)
gcgcgcgcCATTCGCTGGTACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGaccac < 1:3949892/62‑1 (MQ=255)
gcgcgcgcCATTCGCTGGTACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGaccac < 1:245818/62‑1 (MQ=255)
gcgcgcgcCATTCGCTGGTACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGaccac < 1:2284799/62‑1 (MQ=255)
gcgcgcgcCATTCGCTGGTACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGaccac < 1:2040281/62‑1 (MQ=255)
gcgcgcgcCATTCGCTGGTACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGaccac < 1:4680187/62‑1 (MQ=255)
gcgcgcgcCATTCGCTGGTACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGaccac < 1:955348/62‑1 (MQ=255)
cgcgcgcCATTCGCTGGTACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGaccac < 1:3623573/61‑1 (MQ=255)
cgcgcgcCATTCGCTGGTACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGaccac < 1:2069957/61‑1 (MQ=255)
cgcgcgcCATTCGCTGGTACGCCGAAGCGATCGACAAAGGGTATGGCGAAGTAGCGaccac < 1:3340715/61‑1 (MQ=255)
gcgcCATTCGCTGGTACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGACCACCAGt < 1:1341738/62‑1 (MQ=255)
gcgcCATTCGCTGGTACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGACCACCAGt < 1:3099543/62‑1 (MQ=255)
cgcCATTCGCTGGTACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGACCACCAGt < 1:4690803/61‑1 (MQ=255)
cgcCATTCGCTGGTACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGACCACCAGt < 1:2132005/61‑1 (MQ=255)
tGGTACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGACCACCAGTAGCCATGAGCt < 1:4539300/62‑1 (MQ=255)
tGGTACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGACCACCAGTAGCCATGAGCt < 1:859238/62‑1 (MQ=255)
tGGTACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGACCACCAGTAGCCATGAGCt < 1:1170996/62‑1 (MQ=255)
tACGCCGAAGCGATCGACAAATTGTATGGCGAAGTAGCGaccac < 1:3250645/44‑1 (MQ=38)
tACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGaccac < 1:1115098/44‑1 (MQ=255)
tACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGaccac < 1:2661733/44‑1 (MQ=255)
tACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGaccac < 1:2612920/44‑1 (MQ=255)
tACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGaccac < 1:1733268/44‑1 (MQ=255)
tACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGaccac < 1:1088632/44‑1 (MQ=255)
tACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGaccac < 1:1288008/44‑1 (MQ=255)
tACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGaccac < 1:2449601/44‑1 (MQ=255)
tACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGaccac < 1:2435830/44‑1 (MQ=255)
tACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGaccac < 1:1354958/44‑1 (MQ=255)
tACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGaccac < 1:2384536/44‑1 (MQ=255)
tACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGaccac < 1:4362083/44‑1 (MQ=255)
tACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGaccac < 1:2309342/44‑1 (MQ=255)
tACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGaccac < 1:2308217/44‑1 (MQ=255)
tACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGaccac < 1:788172/44‑1 (MQ=255)
tACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGaccac < 1:67019/44‑1 (MQ=255)
tACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGaccac < 1:2038583/44‑1 (MQ=255)
tACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGaccac < 1:200566/44‑1 (MQ=255)
tACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGaccac < 1:1990475/44‑1 (MQ=255)
aCGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGaccac < 1:4117829/43‑1 (MQ=255)
aCGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGACCACCAGTAGCCATGAGCTGGCg > 1:4108233/1‑62 (MQ=255)
aCGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGACCACCAGTAGCCATGAGCTGGCg > 1:939815/1‑62 (MQ=255)
aCGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGACCACCAGTAGCCATGAGCTGGCg > 1:2504430/1‑62 (MQ=255)
aCGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGACCACCAGTAGCCATGAGCTGGCg > 1:3123107/1‑62 (MQ=255)
aCGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGACCACCAGTAGCCATGAGCTGGCg > 1:114427/1‑62 (MQ=255)
aCGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGACCACCAGTAGCCATGAGCTGGCg > 1:1193697/1‑62 (MQ=255)
aCGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGACCACCAGTAGCCATGAGCTGGCg > 1:1286096/1‑62 (MQ=255)
aCGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGACCACCAGTAGCCATGAGCTGGCg > 1:1666460/1‑62 (MQ=255)
aCGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGACCACCAGTAGCCATGAGCTGGCg > 1:1667987/1‑62 (MQ=255)
aCGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGACCACCAGTAGCCATGAGCTGGCg > 1:1900629/1‑62 (MQ=255)
aCGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGACCACCAGTAGCCATGAGCTGGCg > 1:1953148/1‑62 (MQ=255)
aCGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGACCACCAGTAGCCATGAGCTGGCg > 1:2352750/1‑62 (MQ=255)
aCGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGACCACCAGTAGCCATGAGCTGGCg > 1:2420013/1‑62 (MQ=255)
aCGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGACCACCAGTAGCCATGAGCTGGCg > 1:2428545/1‑62 (MQ=255)
aCGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGACCACCAGTAGCCATGAGCTGGCg > 1:1070388/1‑62 (MQ=255)
aCGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGACCACCAGTAGCCATGAGCTGGCg > 1:2564869/1‑62 (MQ=255)
aCGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGACCACCAGTAGCCATGAGCTGGCg > 1:2574477/1‑62 (MQ=255)
aCGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGACCACCAGTAGCCATGAGCTGGCg > 1:2754068/1‑62 (MQ=255)
aCGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGACCACCAGTAGCCATGAGCTGGCg > 1:2991248/1‑62 (MQ=255)
aCGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGACCACCAGTAGCCATGAGCTGGCg > 1:3117653/1‑62 (MQ=255)
aCGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGACCACCAGTAGCCATGAGCTGGCg > 1:319050/1‑62 (MQ=255)
aCGCCGAAGCGATCGACAAAGTGTATGGCGAAGTAGCGACCACAAGTAGCCATGAGCTGGCg > 1:958288/1‑62 (MQ=255)
aGCGATCGACAAAGTGTATGGCGAAGTAGCGACCACCAGTAGCCATGAGCTGGCGATGATcg < 1:2231234/62‑1 (MQ=255)
aGCGATCGACAAAGTGTATGGCGAAGTAGCGACCACCAGTAGCCATGAGCTGGCGATGATcg < 1:402400/62‑1 (MQ=255)
aGCGATCGACAAAGTGTATGGCGAAGTAGCGACCACCAGTAGCCATGAGCTGGCGATGATcg < 1:1683529/62‑1 (MQ=255)
gtgtATGGCGAAGTAGCGACCACCAGTAGCCATGAGCTGGCGATGATCGTGCGTGAACCGGt > 1:1713193/1‑62 (MQ=255)
|
CGCGGCGCGCGCCATTCGCTGGTACGCCGAAGCGATCGACAAAGTGTATGGCGAAGTGGCGACCACCAGTAGCCATGAGCTGGCGATGATCGTGCGTGAACCGGT > W3110S.gb/1364825‑1364929
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
