Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R2
|
164 |
48.3 |
4710601 |
85.3% |
4018142 |
55.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
2,266,989 |
T→C |
intergenic (‑160/‑208) |
fruB ← / → setB |
fused fructose‑specific PTS enzyme IIA component and HPr component/lactose/glucose efflux system |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 2,266,989 | 0 | T | C | 100.0%
| 232.2
/ NA
| 62 | intergenic (‑160/‑208) | fruB/setB | fused fructose‑specific PTS enzyme IIA component and HPr component/lactose/glucose efflux system |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (30/32); total (30/32) |
TGTTTCAGCACGCAAGGAAAGCCGTAAAGTTATGAGCAAAAGTTTGATGTGCTGCACAATTTTTTGCCATTTTTCCTAATTGCTGATGGGAAA > W3110S.gb/2266947‑2267039
|
tGTTTCAGCACGCAAGGAAAGCCGTAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAAttt > 1:3365878/1‑62 (MQ=255)
tGTTTCAGCACGCAAGGAAAGCCGTAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAAttt > 1:1729400/1‑62 (MQ=255)
tGTTTCAGCACGCAAGGAAAGCCGTAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAAttt > 1:4546768/1‑62 (MQ=255)
tGTTTCAGCACGCAAGGAAAGCCGTAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAAttt > 1:1078616/1‑62 (MQ=255)
aCGCAAGGAAAGCCGTAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCAtt < 1:4619221/62‑1 (MQ=255)
aCGCAAGGAAAGCCGTAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCAtt < 1:272053/62‑1 (MQ=255)
aCGCAAGGAAAGCCGTAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCAtt < 1:1559581/62‑1 (MQ=255)
aCGCAAGGAAAGCCGTAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCAtt < 1:2614602/62‑1 (MQ=255)
aCGCAAGGAAAGCCGTAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCAtt < 1:3848525/62‑1 (MQ=255)
aCGCAAGGAAAGCCGTAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCAtt < 1:1967326/62‑1 (MQ=255)
aCGCAAGGAAAGCCGTAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCAtt < 1:4200523/62‑1 (MQ=255)
ggAAAGCCGTAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCATTTTTCCt < 1:1816686/62‑1 (MQ=255)
ggAAAGCCGTAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCATTTTTCCt < 1:2410017/62‑1 (MQ=255)
ggAAAGCCGTAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCATTTTTCCt < 1:2467259/62‑1 (MQ=255)
ggAAAGCCGTAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCATTTTTCCt < 1:2472959/62‑1 (MQ=255)
ggAAAGCCGTAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCATTTTTCCt < 1:2497746/62‑1 (MQ=255)
ggAAAGCCGTAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCATTTTTCCt < 1:4276951/62‑1 (MQ=255)
ggAAAGCCGTAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCATTTTTCCt < 1:1560581/62‑1 (MQ=255)
ggAAAGCCGTAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCATTTTTCCt < 1:543527/62‑1 (MQ=255)
ggAAAGCCGTAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCATTTTTCCt < 1:3054493/62‑1 (MQ=255)
aaaGCCGTAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCAtttt < 1:4155492/56‑1 (MQ=255)
aaaGCCGTAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCAtttt < 1:2877269/56‑1 (MQ=255)
aaaGCCGTAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCAtttt < 1:3865430/56‑1 (MQ=255)
aaaGCCGTAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCAtttt < 1:2123890/56‑1 (MQ=255)
aaaGCCGTAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCAtttt < 1:4004993/56‑1 (MQ=255)
aaaGCCGTAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCAtttt < 1:4528800/56‑1 (MQ=255)
ccGTAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCATTTTTCCTAATTg > 1:1923292/1‑61 (MQ=255)
ccGTAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCATTTTTCCTAATTg > 1:1518786/1‑61 (MQ=255)
gTAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCAt > 1:3936446/1‑47 (MQ=255)
gTAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCAt > 1:3070673/1‑47 (MQ=255)
gTAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCAt > 1:4657869/1‑47 (MQ=255)
gTAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCAt > 1:3709500/1‑47 (MQ=255)
gTAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCAt > 1:350193/1‑47 (MQ=255)
gTAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCAt > 1:845584/1‑47 (MQ=255)
gTAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCAt > 1:3172017/1‑47 (MQ=255)
gTAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCAt > 1:1177097/1‑47 (MQ=255)
gTAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCAt > 1:2073216/1‑47 (MQ=255)
gTAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCAt > 1:2114167/1‑47 (MQ=255)
gTAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCAt > 1:2083151/1‑47 (MQ=255)
tAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCATTTTTCCTaa > 1:1977403/1‑55 (MQ=255)
tAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCATTTTTCCTAAt > 1:3190295/1‑56 (MQ=255)
tAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCATTTTTCCTAAt > 1:1025091/1‑56 (MQ=255)
tAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCATTTTTCCTAAt > 1:4693735/1‑56 (MQ=255)
tAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCATTTTTCCTAAt > 1:4626659/1‑56 (MQ=255)
tAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCATTTTTCCTAAt > 1:1315397/1‑56 (MQ=255)
tAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCATTTTTCCTAAt > 1:417759/1‑56 (MQ=255)
tAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCATTTTTCCTAAt > 1:2665806/1‑56 (MQ=255)
tAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCATTTTTCCTAAt > 1:381571/1‑56 (MQ=255)
tAAAGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTCGCCATTTTTCCTAAt > 1:4387052/1‑56 (MQ=255)
aaaGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCATTTTTCCTAATTGCTGAt > 1:3558618/1‑62 (MQ=255)
aaaGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCATTTTTCCTAATTGCTGAt > 1:3298890/1‑62 (MQ=255)
aaaGTTATGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCATTTTTCCTAATTGCTGAt > 1:102366/1‑62 (MQ=255)
aTGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCAtt < 1:436240/40‑1 (MQ=255)
aTGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCAtt < 1:4541386/40‑1 (MQ=255)
aTGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCAtt < 1:1008441/40‑1 (MQ=255)
aTGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCAtt < 1:1157728/40‑1 (MQ=255)
aTGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCAtt < 1:1101023/40‑1 (MQ=255)
aTGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCAtt < 1:541637/40‑1 (MQ=255)
aTGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCATTTTTCCTAATTGCTGATGGGaaa < 1:4178904/62‑1 (MQ=255)
aTGAGCAAAACCTTGATGTGCTGCACAATTTTTTGCCAtt < 1:3403304/40‑1 (MQ=38)
tGAGCAAAAGCTTGATGTGCTGCACAATTTTTTGCCAtt < 1:2204107/39‑1 (MQ=255)
aaaaGCTTGATGTGCTGCACAATTTTTTGCCATTTTTCCt < 1:2331092/40‑1 (MQ=255)
|
TGTTTCAGCACGCAAGGAAAGCCGTAAAGTTATGAGCAAAAGTTTGATGTGCTGCACAATTTTTTGCCATTTTTCCTAATTGCTGATGGGAAA > W3110S.gb/2266947‑2267039
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
