Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R2
|
164 |
48.3 |
4710601 |
85.3% |
4018142 |
55.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
3,516,285 |
T→C |
intergenic (+20/‑47) |
hslU → / → menA |
molecular chaperone and ATPase component of HslUV protease/1,4‑dihydroxy‑2‑naphthoate octaprenyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 3,516,285 | 0 | T | C | 100.0%
| 111.7
/ NA
| 31 | intergenic (+20/‑47) | hslU/menA | molecular chaperone and ATPase component of HslUV protease/1,4‑dihydroxy‑2‑naphthoate octaprenyltransferase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (22/9); total (22/9) |
GTTGGTGGCAGATGAAGATCTGAGCCGTTTTATCCTATAATCGCGTTCAATCATTTTCATCATTGTTTGATGGGGCTGAAAGGCCCCATTTTTATTGGCGCGTATTATG > W3110S.gb/3516226‑3516334
|
gTTGGTGGCAGATGAAGATCTGAGCCGTTTTATCCTATAATCGCGTTCAATCATTTtcacca > 1:783295/1‑62 (MQ=255)
ttGGTGGCAGATGAAGATCTGAGCCGTTTTATCCTATAATCGCGTTCAATCATTTtcacca < 1:1564965/61‑1 (MQ=255)
ttGGTGGCAGATGAAGATCTGAGCCGTTTTATCCTATAATCGCGTTCAATCATTTtcacca < 1:2348539/61‑1 (MQ=255)
ttGGTGGCAGATGAAGATCTGAGCCGTTTTATCCTATAATCGCGTTCAATCATTTtcacca < 1:2161743/61‑1 (MQ=255)
ttGGTGGCAGATGAAGATCTGAGCCGTTTTATCCTATAATCGCGTTCAATCATTTTcaccat < 1:1142350/62‑1 (MQ=255)
ttGGTGGCAGATGAAGATCTGAGCCGTTTTATCCTATAATCGCGTTCAATCATTTTcaccat < 1:4278214/62‑1 (MQ=255)
ttGGTGGCAGATGAAGATCTGAGCCGTTTTATCCTATAATCGCGTTCAATCATTTTcaccat < 1:4405137/62‑1 (MQ=255)
ttGGTGGCAGATGAAGATCTGAGCCGTTTTATCCTATAATCGCGTTCAATCATTTTcaccat < 1:1029060/62‑1 (MQ=255)
ttGGTGGCAGATGAAGATCTGAGCCGTTTTATCCTATAATCGCGTTCAATCATTTTcaccat < 1:2843816/62‑1 (MQ=255)
ttGGTGGCAGATGAAGATCTGAGCCGTTTTATCCTATAATCGCGTTCAATCATTTTcaccat < 1:50657/62‑1 (MQ=255)
ttGGTGGCAGATGAAGATCTGAGCCGTTTTATCCTATAATCGCGTTCAATCATTTTcaccat < 1:1959967/62‑1 (MQ=255)
tggtggCAGATGAAGATCTGAGCCGTTTTATCCTATAATCGCGTTCAATCATTTTcaccat < 1:1510184/61‑1 (MQ=255)
ggtggCAGATGAAGATCTGAGCCGTTTTATCCTATAATCGCGTTCAATCATTTTCACCAtt < 1:2056301/61‑1 (MQ=255)
gATGAAGATCTGAGCCGTTTTATCCTATAATCGCGTTCAATCATTTTCACCATTGTTTGATg < 1:501050/62‑1 (MQ=255)
gATGAAGATCTGAGCCGTTTTATCCTATAATCGCGTTCAATCATTTTCACCATTGTTTGATg < 1:4357075/62‑1 (MQ=255)
aTGAAGATCTGAGCCGTTTTATCCTATAATCGCGTTCAATCATTTTCACCATTGTTTGATg < 1:3658795/61‑1 (MQ=255)
tGAAGATCTGAGCCGTTTTATCCTATAATCGCGTTCAATCATTTTCACCATTGTTTGAt < 1:595052/59‑1 (MQ=255)
gATCTGAGCCGTTTTATCCTATAATCGCGTTCAATCATTTTCACCATTGTTTGATGGGGCt > 1:3906340/1‑61 (MQ=255)
aTCTGAGCCGTTTTATCCTATAATCGCGTTCAATCATTTTCACCATTGTTTGATGGGGCTGa < 1:2955090/62‑1 (MQ=255)
cTGAGCCGTTTTATCCTATAATCGCGTTCAATCATTTTCACCATTGTTTGAt > 1:452380/1‑52 (MQ=255)
cTGAGCCGTTTTATCCTATAATCGCGTTCAATCATTTTCACCATTGTTTGATGGGGCTGaaa > 1:2322095/1‑62 (MQ=255)
aGCCGTTTTATCCTATAATCGCGTTCAATCATTTTCACCATTGTTTGATGGGGCTGAAAgg > 1:3653919/1‑61 (MQ=255)
aGCCGTTTTATCCTATAATCGCGTTCAATCATTTTCACCATTGTTTGATGGGGCTGAAAGGc > 1:1577904/1‑62 (MQ=255)
aGCCGTTTTATCCTATAATCGCGTTCAATCATTTTCACCATTGTTTGATGGGGCTGAAAGGc > 1:292868/1‑62 (MQ=255)
aGCCGTTTTATCCTATAATCGCGTTCAATCATTTTCACCATTGTTTGATGGGGCTGAAAGGc > 1:4545796/1‑62 (MQ=255)
aGCCGTTTTATCCTATAATCGCGTTCAATCATTTTCACCATTGTTTGATGGGGCTGAAAGGc > 1:1156586/1‑62 (MQ=255)
aGCCGTTTTATCCTATAATCGCGTTCAATCATTTTCACCATTGTTTGATGGGGCTGAAAGGc > 1:1603525/1‑62 (MQ=255)
aGCCGTTTTATCCTATAATCGCGTTCAATCATTTTCACCATTGTTTGATGGGGCTGAAAGGc > 1:3601253/1‑62 (MQ=255)
aGCCGTTTTATCCTATAATCGCGTTCAATCATTTTCACCATTGTTTGATGGGGCTGAAAGGc > 1:3725007/1‑62 (MQ=255)
aGCCGTTTTATCCTATAATCGCGTTCAATCATTTTCACCATTGTTTGATGGGGCTGAAAGGc > 1:1828008/1‑62 (MQ=255)
aGCCGTTTTATCCTATAATCGCGTTCAATCATTTTCACCATTGTTTGATGGGGCTGAAAGGc > 1:4050721/1‑62 (MQ=255)
gTTTTATCCTATAATCGCGTTCAATCATTTTCACCATTGTTTGaa > 1:2988614/1‑44 (MQ=255)
gTTTTATCCTATAATCGCGTTCAATCATTTTCACCATTGTTTGATg < 1:2519743/46‑1 (MQ=255)
gTTTTATCCTATAATCGCGTTCAATCATTTTCACCATTGTTTGATGGGGCTGAAAGGCCCCa > 1:4346663/1‑62 (MQ=255)
gTTTTATCCTATAATCGCGTTCAATCATTTTCACCATTGTTTGATGGGGCTGAAAGGCCCCa > 1:1368864/1‑62 (MQ=255)
ttttATCCTATAATCGCGTTCAATCATTTTcaccat < 1:3532946/36‑1 (MQ=255)
cTATAATCGCGTTCAATCATTTTCACCATTGTTTGATGGGGCTGAAAGGCCCCATTTTTAt < 1:483460/61‑1 (MQ=255)
ataATCGCGTTCAATCATTTTCACCATTGTTTGATGGGGCTGAAAGGCCCCATTTTTATTgg < 1:2508917/62‑1 (MQ=255)
gTTCAATCATTTTCACCATTGTTTGATGGGGCTGAAAGGCCCCATTTTTATTGGCGCGtat > 1:2034205/1‑61 (MQ=255)
gTTCAATCATTTTCACCATTGTTTGATGGGGCTGAAAGGCCCCATTTTTATTGGCGCGtat > 1:99058/1‑61 (MQ=255)
aacATTTTCACCATTGTTTGATGGGGCTGAAAGGCCCCATTTTTATTgg > 1:2333629/3‑49 (MQ=39)
aTCATTTTCTCCATTGTTTGATGGGGCTGAAAGGCCCCATTTTTATTGGCGCGtattat > 1:371291/1‑59 (MQ=255)
aTCATTTTCACCATTGTTTGATGGGGCTGAAAGGCCCCATTTTTATTGGCGCGtattat > 1:2152025/1‑59 (MQ=255)
aTCATTTTCACCATTGTTTGATGGGGCTGAAAGGCCCCATTTTTATTGGCGCGTATTATg > 1:3286548/1‑60 (MQ=255)
|
GTTGGTGGCAGATGAAGATCTGAGCCGTTTTATCCTATAATCGCGTTCAATCATTTTCATCATTGTTTGATGGGGCTGAAAGGCCCCATTTTTATTGGCGCGTATTATG > W3110S.gb/3516226‑3516334
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
