Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R2
|
164 |
48.3 |
4710601 |
85.3% |
4018142 |
55.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
4,561,090 |
G→A |
intergenic (‑88/‑585) |
yjiC ← / → yjiD |
hypothetical protein/DNA replication/recombination/repair protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 4,561,090 | 0 | G | A | 100.0%
| 150.5
/ NA
| 46 | intergenic (‑88/‑585) | yjiC/yjiD | hypothetical protein/DNA replication/recombination/repair protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (24/22); total (24/22) |
GATGTTTAGAAAAATAGATAAATTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGACATGCATGTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTAAAGGGTAGGAAAC > W3110S.gb/4561031‑4561146
|
gATGTTTAGAAAAATAGATAAATTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGAcataca > 1:3619257/1‑62 (MQ=255)
tAGAAAAATAGATAAATTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGACATACGTGttt < 1:4232030/61‑1 (MQ=255)
tAGAAAAATAGATAAATTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGACATACATGttt < 1:3400437/61‑1 (MQ=255)
tAGAAAAATAGATAAATTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGACATACATGttt < 1:3025978/61‑1 (MQ=255)
tAGAAAAATAGATAAATTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGACATACATGttt < 1:3556502/61‑1 (MQ=255)
tAGAAAAATAGATAAATTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGACATACATGttt < 1:1443418/61‑1 (MQ=255)
tAGAAAAATAGATAAATTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGACATACATGttt < 1:3573906/61‑1 (MQ=255)
tAGAAAAATAGATAAATTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGACATACATGttt < 1:388396/61‑1 (MQ=255)
tAGATAAATTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGACATACATGTTTCTGTTGTAg < 1:1268221/62‑1 (MQ=255)
tAGATAAATTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGACATACATGTTTCTGTTGTAg < 1:1357799/62‑1 (MQ=255)
tAGATAAATTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGACATACATGTTTCTGTTGTAg < 1:2901744/62‑1 (MQ=255)
tAGATAAATTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGACATACATGTTTCTGTTGTAg < 1:411569/62‑1 (MQ=255)
tAAATTTTTCTTTAGTAAAAAGAGAAGTAAACAAATGACATACATGTTTCTGTTGTAGTGat > 1:702096/1‑62 (MQ=255)
tAAATTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGACATACATGTTTCTGTTGTAGTGat > 1:783867/1‑62 (MQ=255)
tAAATTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGACATACATGTTTCTGTTGTAGTGat > 1:2900111/1‑62 (MQ=255)
tAAATTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGACATACATGTTTCTGTTGTAGTGat > 1:783863/1‑62 (MQ=255)
aaTTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGacatacat < 1:4194997/43‑1 (MQ=255)
aaTTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGacatacat < 1:432909/43‑1 (MQ=255)
aaTTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGacatacat < 1:2459255/43‑1 (MQ=255)
aaTTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGacatacat < 1:3928103/43‑1 (MQ=255)
aaTTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGacatacat < 1:2703014/43‑1 (MQ=255)
aaTTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGacatacat < 1:1900336/43‑1 (MQ=255)
aaTTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGacatacat < 1:2273377/43‑1 (MQ=255)
aaTTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGacatacat < 1:2752530/43‑1 (MQ=255)
aaTTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGacatacat < 1:182897/43‑1 (MQ=255)
aaTTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGacatacat < 1:1781875/43‑1 (MQ=255)
aaTTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGacatacat < 1:1619156/43‑1 (MQ=255)
aaTTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGacatacat < 1:1283205/43‑1 (MQ=255)
tttCTGTAGTAAAAAGAGAAGTAAACAAATGACATACATGTTTCtg < 1:3837208/46‑1 (MQ=255)
tttCTGTAGTAAAAAGAGAAGTAAACAAATGACATACATGTTTCtg < 1:2410903/46‑1 (MQ=255)
ttCTGTAGTAAAAAGAGAAGTAAACAAATGACATACATGTTTCTGTTGTAGTGATATCAAc > 1:4502802/1‑61 (MQ=255)
ttCTGTAGTAAAAAGAGAAGTAAACAAATGACATACATGTTTCTGTTGTAGTGATATCAAc > 1:1139252/1‑61 (MQ=255)
ttCTGTAGTAAAAAGAGAAGTAAACAAATGACATACATGTTTCTGTTGTAGTGATATCAAc > 1:2802162/1‑61 (MQ=255)
cTGTAGTAAAAAGAGAAGTAAACAAATGAcataca > 1:3281070/1‑35 (MQ=255)
cTGTAGTAAAAAGAGAAGTAAACAAATGACATACATGTTTCtg > 1:2354217/1‑43 (MQ=255)
cTGTAGTAAAAAGAGAAGTAAACAAATGACATACATGTTTCtg > 1:161316/1‑43 (MQ=255)
cTGTAGTAAAAAGAGAAGTAAACAAATGACATACATGTTTCtg > 1:3200264/1‑43 (MQ=255)
cTGTAGTAAAAAGAGAAGTAAACAAATGACATACATGTTTCtg > 1:2958540/1‑43 (MQ=255)
cTGTAGTAAAAAGAGAAGTAAACAAATGACATACATGTTTCtg > 1:2881766/1‑43 (MQ=255)
cTGTAGTAAAAAGAGAAGTAAACAAATGACATACATGTTTCt > 1:271386/1‑42 (MQ=255)
tGTAGTAAAAAGAGAAGTAAACAAATGACATACATGTTTCTGTTGTAGTGATATCAActct < 1:2714428/61‑1 (MQ=255)
tGTAGTAAAAAGAGAAGTAAACAAATGACATACATGTTTCTGTTGTAGTGATATCAActct < 1:3890974/61‑1 (MQ=255)
tGTAGTAAAAAGAGAAGTAAACAAATGACATACATGTTTCTGTTGTAGTGATATCAActct < 1:1191635/61‑1 (MQ=255)
tGTAGTAAAAAGAGAAGTAAACAAATGACATACATGTTTCTGTTGTAGTGATATCAActct < 1:245120/61‑1 (MQ=255)
tGTAGTAAAAAGAGAAGTAAACAAATGACATACATGTTTCTGTTGTAGTGATATCAActct < 1:239335/61‑1 (MQ=255)
tGTAGTAAAAAGAGAAGTAAACAAATGACATACATGTTTCTGTTGTAGTGATATCAActct < 1:4436997/61‑1 (MQ=255)
agtaAAAAGAGAAGTAAACAAATGACATACATGTTTCTGTTGTAGt > 1:2151845/1‑46 (MQ=255)
agtaAAAAGAGAAGTAAACAAATGACATACATGTTTCTGTTGTAGt > 1:559381/1‑46 (MQ=255)
agtaAAAAGAGAAGTAAACAAATGACATACATGTTTCTGTTGTAGt > 1:4705940/1‑46 (MQ=255)
aaaaaGAGAAGTAAACAAATGACATACATGTTTCTGTTGTAGTGATATCAACTCTACACGGt < 1:1143876/62‑1 (MQ=255)
aaaaaGAGAAGTAAACAAATGACATACATGTTTCTGTTGTAGTGATATCAACTCTACACGGt < 1:936088/62‑1 (MQ=255)
aaaaaGAGAAGTAAACAAATGACATACATGTTTCTGTTGTAGTGATATCAACTCTACACGGt < 1:945792/62‑1 (MQ=255)
aaGTAAACAAATGACATACATGTTTCTGTTGTGGTGATATCAACTCTACACGGTGATATTaa > 1:3097374/1‑62 (MQ=255)
aaGTAAACAAATGACATACATGTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTaa > 1:431512/1‑62 (MQ=255)
aaGTAAACAAATGACATACATGTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTaa > 1:4521836/1‑62 (MQ=255)
aaGTAAACAAATGACATACATGTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTaa > 1:3456133/1‑62 (MQ=255)
aaGTAAACAAATGACATACATGTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTaa > 1:577403/1‑62 (MQ=255)
aaGTAAACAAATGACATACATGTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTa > 1:1000585/1‑61 (MQ=255)
gACATACATGTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTAAAGGGTAGGAAac > 1:3996059/1‑62 (MQ=255)
gACATACATGTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTAAAGGGTAGGAAac > 1:2581340/1‑62 (MQ=255)
|
GATGTTTAGAAAAATAGATAAATTTTTCTGTAGTAAAAAGAGAAGTAAACAAATGACATGCATGTTTCTGTTGTAGTGATATCAACTCTACACGGTGATATTAAAGGGTAGGAAAC > W3110S.gb/4561031‑4561146
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
