Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F28 I2 R2
|
64 |
60.0 |
3197630 |
92.7% |
2964203 |
60.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
1,434,773 |
T→C |
A465A (GCA→GCG) |
yojI ← |
fused predicted multidrug transport subunits and membrane component and ATP‑binding component of ABC superfamily |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,434,773 | 0 | T | C | 100.0%
| 193.7
/ NA
| 53 | A465A (GCA→GCG) | yojI | fused predicted multidrug transport subunits and membrane component and ATP‑binding component of ABC superfamily |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (20/33); total (20/33) |
AACTCACGACGGAAGTGTGGATCCTGATCCGCCGCCCATTCATCCAGCAGGATAATATCGCGTTCTTCTGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCTTTTGATAACTTCAGGTTAACAATAC > minE/1434705‑1434837
|
aaCTCACGACGGAAGTGTGGATCCTGATCCGCCGCCCATTCATCCAGCAGGATAATATCGCGTTCTTCCgc < 1:267489/71‑1 (MQ=255)
gacgGAAGTGTGGATCCTGATCCGCCGCCCATTCATCCAGCAGGATAATATCGCGTTCTTCCgccagcgcc < 1:957728/71‑1 (MQ=255)
gtgtGGATCCTGATCCGCCGCCCATTCATCCAGCAGGATAATATCGCGTTCTTCCGCCAGCGCCAGCaa > 1:649708/1‑69 (MQ=255)
tgGATCCTGCTCCGCCGCCCATTCATCCAGCAGGATAATATCGCGTTCTTCCgccagcgcca > 1:858855/1‑62 (MQ=255)
aTCCTGATCCGCCGCCCATTCATCCAGCAGGATAATATCGCGTTCTTCCgccagcg < 1:909001/56‑1 (MQ=255)
aTCCTGATCCGCCGCCCATTCATCCAGCAGGATAATATCGCGTTCTTCCgccagcg < 1:2600719/56‑1 (MQ=255)
aTCCTGATCCGCCGCCCATTCATCCAGCAGGATAATATCGCGTTCTTCCGCCAGCGCCAGCAACAGCGCCa < 1:1306031/71‑1 (MQ=255)
aTCCGCCGCCCATTCATCCAGCAGGATAATATCGCGTTCTTCCGCCAGCGCCAGCAACAGCGCCAcgcg < 1:2207594/69‑1 (MQ=255)
ccgccCATTCATCCAGCAGGATAATATCGCGTTCTTCCGCCAGCGCCAGCAACAg > 1:2792040/1‑55 (MQ=255)
ccgccCATTCATCCAGCAGGATAATATCGCGTTCTTCCGCCAGCGCCAGCAACAg > 1:614162/1‑55 (MQ=255)
ccgccCATTCATCCAGCAGGATAATATCGCGTTCTTCCGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTc > 1:922816/1‑71 (MQ=255)
ccgccCATTCATCCAGCAGGATAATATCGCGTTCTTCCGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTc > 1:919087/1‑71 (MQ=255)
cgccCATTCATCCAGCAGGATAATATCGCGTTCTTCCGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCt < 1:2643093/71‑1 (MQ=255)
gccCATTCATCCAGCAGGATAATATCGCGTTCTTCCGCCAGCGCCAGCaa > 1:562896/1‑50 (MQ=255)
gccCATTCATCCAGCAGGATAATATCGCGTTCTTCCGCCAGCGCCAGCaa > 1:1048711/1‑50 (MQ=255)
cccATTCATCCAGCAGGATAATATCGCGTTCTTCCGCCAGCGCCAGCAACAgcg < 1:303195/54‑1 (MQ=255)
ttCATCCAGCAGGATAATATCGCGTTCTTCCGCCAGCGCCAGCAACAGCGcc > 1:2678090/1‑52 (MQ=255)
ttCATCCAGCAGGATAATATCGCGTTCTTCCGCCAGCGCCAGCAACAGCGcc > 1:2387001/1‑52 (MQ=255)
ttCATCCAGCAGGATAATATCGCGTTCTTCCGCCAGCGCCAGCAACAGCGcc > 1:1851467/1‑52 (MQ=255)
ttCATCCAGCAGGATAATATCGCGTTCTTCCGCCAGCGCCAGCAACAGCGcc > 1:699650/1‑52 (MQ=255)
cATCCAGCAGGATAATATCGCGTTCTTCCgccagc > 1:58965/1‑35 (MQ=255)
cATCCAGCAGGATAATATCGCGTTCTTCCGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCtttt > 1:3053280/1‑71 (MQ=255)
cATCCAGCAGGATAATATCGCGTTCTTCCGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCtttt > 1:649173/1‑71 (MQ=255)
aTCCAGCAGGATAATATCGCGTTCTTCCGCCAGCGCCAGCAACAGCGCCACGCGtttttt > 1:2050676/1‑60 (MQ=255)
tCCAGCAGGATAATATCGCGTTCTTCCGCCAGCGCCAGCAACAGCGCCACGCGtttttt > 1:490234/1‑59 (MQ=255)
agcagGATAATATCGCGTTCTTCCGCCAGCGCCAGCAACa < 1:469333/40‑1 (MQ=255)
agcagGATAATATCGCGTTCTTCCGCCAGCGCCAGCAACa < 1:1086552/40‑1 (MQ=255)
agcagGATAATATCGCGTTCTTCCGCCAGCGCCAGCAACa < 1:3010799/40‑1 (MQ=255)
agcagGATAATATCGCGTTCTTCCGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCTTTTGATaa < 1:3087135/71‑1 (MQ=255)
gcagGATAATATCGCGTTCTTCCGCCAGCGCCAGCAACa < 1:2764042/39‑1 (MQ=255)
gcagGATAATATCGCGTTCTTCCGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCTTTTGATAAc < 1:582943/71‑1 (MQ=255)
agGATAATATCGCGTTCTTCCGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCTTTTGATAACtt > 1:2202882/1‑71 (MQ=255)
gATAATATCGCGTTCTTCCGCCAGCGCCAGCAACAGCGCCAcg < 1:1083607/43‑1 (MQ=255)
gATAATATCGCGTTCTTCCGCCAGCGCCAGCAACAGCGCCAcg < 1:1472153/43‑1 (MQ=255)
gATAATATCGCGTTCTTCCGCCAGCGCCAGCAACAGCGCCAcg < 1:1831617/43‑1 (MQ=255)
taataTCGCGTTCTTCCGCCAGCGCCAGCAACAGCGCCACGCGtttttt > 1:575037/1‑49 (MQ=255)
taataTCGCGTTCTTCCGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCTTTTGATAACTTCAgg < 1:2735478/71‑1 (MQ=255)
taataTCGCGTTCTTCCGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCTTTTGATAACTTCAgg < 1:2739143/71‑1 (MQ=255)
atatCGCGTTCTTCCGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCTTTTGATAACTTCAGGtt < 1:1790076/71‑1 (MQ=255)
tatCGCGTTCTTCCGCCAGCGCCAGCAACAGCGCCa > 1:3031637/1‑36 (MQ=255)
tatCGCGTTCTTCCGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCTTTTGATAACTTCAGGtt < 1:1086854/70‑1 (MQ=255)
tatCGCGTTCTTCCGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCTTTTGATAACTTCAGGtt < 1:899498/70‑1 (MQ=255)
atCGCGTTCTTCCGCCAGCGCCAGCAACAGCGCCAcg < 1:286317/37‑1 (MQ=255)
tCGCGTTCTTCCGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCTTTTGATAACTTc < 1:1760210/63‑1 (MQ=255)
tCGCGTTCTTCCGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCTTTTGATAACTTc < 1:202110/63‑1 (MQ=255)
tCGCGTTCTTCCGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCTTTTGATAACTTCAGGTTAAc < 1:751540/71‑1 (MQ=255)
gTTCTTCCGCCAGCGCCAGCAACAGCGCCACGCGtt < 1:1783871/36‑1 (MQ=255)
gTTCTTCCGCCAGCGCCAGCAACAGCGCCACGCGtt < 1:1588135/36‑1 (MQ=255)
gTTCTTCCGCCAGCGCCAGCAACAGCGCCACGCGtt < 1:1232091/36‑1 (MQ=255)
ttcttcCGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCtt < 1:3025223/47‑1 (MQ=255)
ttcttcCGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCtt < 1:2992639/47‑1 (MQ=255)
ttcttcCGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCTTTTGATAACTTCAGGTTAACAATAc < 1:305122/71‑1 (MQ=255)
ttcttcCGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCTTTTGATAACTTCAGGTTAACAATAc < 1:2080291/71‑1 (MQ=255)
tcttccGCCAGCGCCAGCAACAGCGCCACGCGttttt < 1:1641353/37‑1 (MQ=255)
ttccGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTc > 1:1328851/1‑37 (MQ=255)
|
AACTCACGACGGAAGTGTGGATCCTGATCCGCCGCCCATTCATCCAGCAGGATAATATCGCGTTCTTCTGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCTTTTGATAACTTCAGGTTAACAATAC > minE/1434705‑1434837
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
