Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I2 R1
|
330 |
0.0 |
2544031 |
91.9% |
2337964 |
62.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
686,526 |
A→G |
I189T (ATC→ACC) |
gltJ ← |
glutamate and aspartate transporter subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 686,526 | 0 | A | G | 100.0%
| 270.1
/ NA
| 72 | I189T (ATC→ACC) | gltJ | glutamate and aspartate transporter subunit |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (55/17); total (55/17) |
GCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGC > W3110S.gb/686475‑686582
|
gCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGGTAGTCGAGGCGAt > 1:103475/1‑65 (MQ=255)
gCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGGTAGTCGAGGCGAt > 1:223714/1‑65 (MQ=255)
gCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGGTAGTCGAGGCGAt > 1:2254205/1‑65 (MQ=255)
gCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGGTAGTCGAGGCGAt > 1:201284/1‑65 (MQ=255)
gCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGGTAGTCGAGGCGAt > 1:2272546/1‑65 (MQ=255)
gCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGGTAGTCGAGGCGAt > 1:1913737/1‑65 (MQ=255)
gCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGGTAGTCGAGGCGAt > 1:40340/1‑65 (MQ=255)
gCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGGTAGTCGAGGCGAt > 1:406259/1‑65 (MQ=255)
gCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGGTAGTCGAGGCGAt > 1:465143/1‑65 (MQ=255)
gCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGGTAGTCGAGGCGAt > 1:1315921/1‑65 (MQ=255)
gCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGGTAGTCGAGGCGAt > 1:897608/1‑65 (MQ=255)
gCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGGTAGTCGAGGCGAt > 1:887440/1‑65 (MQ=255)
gCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGGTAGTCGAGGCGAt > 1:1206367/1‑65 (MQ=255)
cGCCTGCGCCGCCATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCAcc > 1:1291164/1‑58 (MQ=255)
cGCCTGCGCCGCCATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtc > 1:1824067/1‑64 (MQ=255)
cGCCTGCGCCGCCATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtc > 1:2199880/1‑64 (MQ=255)
cGCCTGCGCCGCCATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtc > 1:2416703/1‑64 (MQ=255)
cGCCTGCGCCGCCATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtc > 1:2506592/1‑64 (MQ=255)
cGCCTGCGCCGCCATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtc > 1:1916424/1‑64 (MQ=255)
cGCCTGCGCCGCCATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtc > 1:1182455/1‑64 (MQ=255)
cGCCTGCGCCGCCATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtc > 1:1841833/1‑64 (MQ=255)
cGCCTGCGCCGCCATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtc > 1:1825603/1‑64 (MQ=255)
cGCCTGCGCCGCCATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtc > 1:829944/1‑64 (MQ=255)
cGCCTGCGCCGCCATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtc > 1:816657/1‑64 (MQ=255)
cGCCTGCGCCGCCATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtc > 1:153042/1‑64 (MQ=255)
cGCCTGCGCCGCCATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtc > 1:1455964/1‑64 (MQ=255)
cGCCTGCGCCGCCATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtc > 1:632225/1‑64 (MQ=255)
cGCCTGCGCCGCCATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtc > 1:343132/1‑64 (MQ=255)
cGCCTGCGCCGCCATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtc > 1:1422692/1‑64 (MQ=255)
cGCCTGCGCCGCCATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtc > 1:724098/1‑64 (MQ=255)
cGCCTGCGCCGCCATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtc > 1:751253/1‑64 (MQ=255)
gccATATCCACCAGACCGGTAGTCGAGGCGATGGCGTAGTTTTTCACCAGGTTCATCATCTCTGa < 1:2194278/65‑1 (MQ=255)
gccATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGa < 1:667795/65‑1 (MQ=255)
gccATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGa < 1:781804/65‑1 (MQ=255)
gccATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGa < 1:1070959/65‑1 (MQ=255)
gccATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGa < 1:2238459/65‑1 (MQ=255)
gccATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGa < 1:886134/65‑1 (MQ=255)
gccATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGa < 1:275623/65‑1 (MQ=255)
gccATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGa < 1:300893/65‑1 (MQ=255)
gccATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGa < 1:2106421/65‑1 (MQ=255)
gccATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGa < 1:1601866/65‑1 (MQ=255)
gccATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGa < 1:1625452/65‑1 (MQ=255)
gccATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGa < 1:1804815/65‑1 (MQ=255)
gccATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGa < 1:1955565/65‑1 (MQ=255)
gccATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGa < 1:1221127/65‑1 (MQ=255)
gccATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGa < 1:1135354/65‑1 (MQ=255)
gccATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGa < 1:2090158/65‑1 (MQ=255)
ccATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCCCCAGGt > 1:1802508/1‑51 (MQ=255)
ccATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcatc > 1:1141273/1‑56 (MQ=255)
ccATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcatc > 1:793232/1‑56 (MQ=255)
ccATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcatc > 1:2198130/1‑56 (MQ=255)
ccATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcatc > 1:722421/1‑56 (MQ=255)
ccATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcatc > 1:9844/1‑56 (MQ=255)
ccATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcatc > 1:668245/1‑56 (MQ=255)
ccATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcatc > 1:145077/1‑56 (MQ=255)
ccATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcatc > 1:654784/1‑56 (MQ=255)
ccATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcatc > 1:1453768/1‑56 (MQ=255)
ccATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcatc > 1:1577921/1‑56 (MQ=255)
ccATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcatc > 1:405077/1‑56 (MQ=255)
ccATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcatc > 1:1902890/1‑56 (MQ=255)
ccATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcatc > 1:245108/1‑56 (MQ=255)
ccATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcatc > 1:1956409/1‑56 (MQ=255)
ccATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcatc > 1:2074665/1‑56 (MQ=255)
ccATATCCACCAGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGa < 1:1345679/64‑1 (MQ=255)
ccaGACCGGTAGTCGAGGCGATGGCGGAGTTTTTTACCAGGTTCATCATCTCTGAGGTCATcggc > 1:440666/1‑65 (MQ=255)
ccaGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCa > 1:198755/1‑36 (MQ=255)
ccaGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATcggc > 1:462526/1‑65 (MQ=255)
ccaGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATcggc > 1:137672/1‑65 (MQ=255)
ccaGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATcggc > 1:1271836/1‑65 (MQ=255)
ccaGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATcggc > 1:1122052/1‑65 (MQ=255)
ccaGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATcgg > 1:440662/1‑64 (MQ=255)
ccaGACCGGTAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATcg > 1:1396658/1‑63 (MQ=255)
|
GCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGC > W3110S.gb/686475‑686582
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
