Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I1 R1
|
354 |
41.7 |
3110465 |
93.1% |
2895842 |
61.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
710,341 |
C→T |
P44S (CCA→TCA) |
ybfN → |
predicted lipoprotein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 710,341 | 0 | C | T | 100.0%
| 168.9
/ NA
| 51 | P44S (CCA→TCA) | ybfN | predicted lipoprotein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (27/24); total (27/24) |
GCATACAGCGCCTGTATCAACACCGCACAAGGTTCGCCAGAAAAAATTGAAGCCTGCCAGAGCGTGTTAAACGTGCTGAAGAAA > W3110S.gb/710305‑710388
|
gCATACAGCGCCTGTATCAACACCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCgt < 1:491236/65‑1 (MQ=255)
gCATACAGCGCCTGTATCAACACCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCgt < 1:2851821/65‑1 (MQ=255)
gCATACAGCGCCTGTATCAACACCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCgt < 1:3020624/65‑1 (MQ=255)
gCATACAGCGCCTGTATCAACACCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCgt < 1:2728755/65‑1 (MQ=255)
gCATACAGCGCCTGTATCAACACCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCgt < 1:302994/65‑1 (MQ=255)
gCATACAGCGCCTGTATCAACACCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCgt < 1:260850/65‑1 (MQ=255)
gCATACAGCGCCTGTATCAACACCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCgt < 1:2539741/65‑1 (MQ=255)
gCATACAGCGCCTGTATCAACACCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCgt < 1:2528168/65‑1 (MQ=255)
gCATACAGCGCCTGTATCAACACCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCgt < 1:2369323/65‑1 (MQ=255)
gCATACAGCGCCTGTATCAACACCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCgt < 1:45226/65‑1 (MQ=255)
gCATACAGCGCCTGTATCAACACCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCgt < 1:485128/65‑1 (MQ=255)
gCATACAGCGCCTGTATCAACACCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCgt < 1:1782584/65‑1 (MQ=255)
gCATACAGCGCCTGTATCAACACCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCgt < 1:767032/65‑1 (MQ=255)
gCATACAGCGCCTGTATCAACACCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCgt < 1:1423535/65‑1 (MQ=255)
gCATACAGCGCCTGTATCAACACCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCgt < 1:1383584/65‑1 (MQ=255)
gCATACAGCGCCTGTATCAACACCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCgt < 1:1277454/65‑1 (MQ=255)
gCATACAGCGCCTGTATCAACACCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCgt < 1:1209758/65‑1 (MQ=255)
cATACAGCGCCTGTATCAACACCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGAgt < 1:398764/64‑1 (MQ=255)
aGCGCCTGTATCAACACCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCGTGTTaaa > 1:999063/1‑65 (MQ=255)
aGCGCCTGTATCAACACCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCGTGTTaaa > 1:556778/1‑65 (MQ=255)
aGCGCCTGTATCAACACCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCGTGTTaaa > 1:690996/1‑65 (MQ=255)
aGCGCCTGTATCAACACCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCGTGTTaaa > 1:409338/1‑65 (MQ=255)
aGCGCCTGTATCAACACCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCGTGTTaaa > 1:842764/1‑65 (MQ=255)
aGCGCCTGTATCAACACCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCGTGTTaaa > 1:87102/1‑65 (MQ=255)
aGCGCCTGTATCAACACCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCGTGTTaaa > 1:1051708/1‑65 (MQ=255)
aGCGCCTGTATCAACACCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCGTGTTaaa > 1:2848032/1‑65 (MQ=255)
aGCGCCTGTATCAACACCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCGTGTTaaa > 1:1452861/1‑65 (MQ=255)
aGCGCCTGTATCAACACCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCGTGTTaaa > 1:2618745/1‑65 (MQ=255)
aGCGCCTGTATCAACACCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCGTGTTaaa > 1:2529308/1‑65 (MQ=255)
aGCGCCTGTATCAACACCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCGTGTTaaa > 1:1862098/1‑65 (MQ=255)
aGCGCCTGTATCAACACCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCGTGTTaaa > 1:1814763/1‑65 (MQ=255)
aGCGCCTGTATCAACACCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCGTGTTaaa > 1:1859344/1‑65 (MQ=255)
tCAACACCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCGTGTTAAACGTGCTgaa > 1:137196/1‑64 (MQ=255)
tCAACACCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCGTGTTAAACGTGCTgaa > 1:91967/1‑64 (MQ=255)
tCAACACCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCGTGTTAAACGTGCTgaa > 1:785844/1‑64 (MQ=255)
tCAACACCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCGTGTTAAACGTGCTgaa > 1:1613624/1‑64 (MQ=255)
tCAACACCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCGTGTTAAACGTGCTgaa > 1:646780/1‑64 (MQ=255)
tCAACACCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCGTGTTAAACGTGCTgaa > 1:641583/1‑64 (MQ=255)
tCAACACCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCGTGTTAAACGTGCTgaa > 1:1656364/1‑64 (MQ=255)
tCAACACCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCGTGTTAAACGTGCTgaa > 1:2244717/1‑64 (MQ=255)
tCAACACCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCGTGTTAAACGTGCTgaa > 1:2806253/1‑64 (MQ=255)
tCAACACCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCGTGTTAAACGTGCTgaa > 1:2983288/1‑64 (MQ=255)
tCAACACCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCGTGTTAAACGTGCTgaa > 1:294712/1‑64 (MQ=255)
tCAACACCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCGTGTTAAACGTGCTgaa > 1:2920273/1‑64 (MQ=255)
tCAACACCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCGTGTTAAACGTGCTgaa > 1:2870007/1‑64 (MQ=255)
cacCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGATCGTGTTAAACGTGCTGaagaaa < 1:1487419/64‑1 (MQ=255)
cacCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCGTGTTAAACGTGCTGaagaaa < 1:471037/64‑1 (MQ=255)
cacCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCGTGTTAAACGTGCTGaagaaa < 1:1588577/64‑1 (MQ=255)
cacCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCGTGTTAAACGTGCTGaagaaa < 1:890687/64‑1 (MQ=255)
cacCGCACAAGGTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCGTGTTAAACGTGCTGaagaaa < 1:281678/64‑1 (MQ=255)
ggTTCGTCAGAAAAAATTGAAGCCTGCCAGAGCgt < 1:3100329/35‑1 (MQ=255)
|
GCATACAGCGCCTGTATCAACACCGCACAAGGTTCGCCAGAAAAAATTGAAGCCTGCCAGAGCGTGTTAAACGTGCTGAAGAAA > W3110S.gb/710305‑710388
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
