Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I1 R1
|
354 |
41.7 |
3110465 |
93.1% |
2895842 |
61.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
3,614,917 |
G→A |
G513G (GGC→GGT) |
ubiB ← |
2‑octaprenylphenol hydroxylase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 3,614,917 | 0 | G | A | 100.0%
| 233.6
/ NA
| 71 | G513G (GGC→GGT) | ubiB | 2‑octaprenylphenol hydroxylase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (42/29); total (42/29) |
ACCTGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTGCCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAACGCGATTGT > W3110S.gb/3614857‑3614965
|
accTGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTACCAc < 1:208318/65‑1 (MQ=255)
accTGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTACCAc < 1:598104/65‑1 (MQ=255)
accTGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTACCAc < 1:1293559/65‑1 (MQ=255)
accTGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTACCAc < 1:2031420/65‑1 (MQ=255)
accTGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTACCAc < 1:1402005/65‑1 (MQ=255)
accTGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTACCAc < 1:2246892/65‑1 (MQ=255)
accTGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTACCAc < 1:860712/65‑1 (MQ=255)
accTGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTACCAc < 1:3035793/65‑1 (MQ=255)
accTGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTACCAc < 1:3007536/65‑1 (MQ=255)
accTGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCCGACCAACAAGAATGTACCAc < 1:2548906/65‑1 (MQ=255)
ccTGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTACCAc < 1:2835778/64‑1 (MQ=255)
cccATTCAGGTCGGCTGACCAACAAGAATGTACCa > 1:2476974/1‑35 (MQ=255)
cccATTCAGGTCGGCTGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCgag > 1:222416/1‑64 (MQ=255)
tCGGCTGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAActcg > 1:2223861/1‑65 (MQ=255)
tCGGCTGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAAcgcg > 1:2500172/1‑65 (MQ=255)
tCGGCTGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAAcgcg > 1:255152/1‑65 (MQ=255)
tCGGCTGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAAcgcg > 1:2557275/1‑65 (MQ=255)
tCGGCTGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAAcgcg > 1:25372/1‑65 (MQ=255)
tCGGCTGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAAcgcg > 1:834149/1‑65 (MQ=255)
tCGGCTGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAAcgcg > 1:838629/1‑65 (MQ=255)
tCGGCTGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAAcgcg > 1:786611/1‑65 (MQ=255)
tCGGCTGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAAcgcg > 1:2675563/1‑65 (MQ=255)
tCGGCTGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAAcgcg > 1:2731786/1‑65 (MQ=255)
tCGGCTGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAAcgcg > 1:2743418/1‑65 (MQ=255)
tCGGCTGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAAcgcg > 1:2885813/1‑65 (MQ=255)
tCGGCTGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAAcgcg > 1:2919480/1‑65 (MQ=255)
tCGGCTGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAAcgcg > 1:2945647/1‑65 (MQ=255)
tCGGCTGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAAcgcg > 1:337976/1‑65 (MQ=255)
tCGGCTGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAAcgcg > 1:832100/1‑65 (MQ=255)
tCGGCTGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAAcgcg > 1:830140/1‑65 (MQ=255)
tCGGCTGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAAcgcg > 1:822256/1‑65 (MQ=255)
tCGGCTGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAAcgcg > 1:452793/1‑65 (MQ=255)
tCGGCTGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAAcgcg > 1:55858/1‑65 (MQ=255)
tCGGCTGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAAcgcg > 1:807176/1‑65 (MQ=255)
tCGGCTGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAAcgcg > 1:1058433/1‑65 (MQ=255)
tCGGCTGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAAcgcg > 1:1524867/1‑65 (MQ=255)
tCGGCTGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAAcgcg > 1:1587833/1‑65 (MQ=255)
tCGGCTGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAAcgcg > 1:1505202/1‑65 (MQ=255)
tCGGCTGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAAcgcg > 1:1444918/1‑65 (MQ=255)
tCGGCTGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAAcgcg > 1:1866631/1‑65 (MQ=255)
tCGGCTGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAAcgcg > 1:2495346/1‑65 (MQ=255)
tCGGCTGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAAcgcg > 1:1936231/1‑65 (MQ=255)
tCGGCTGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAAcgcg > 1:1375277/1‑65 (MQ=255)
tCGGCTGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAAcgcg > 1:2057599/1‑65 (MQ=255)
tCGGCTGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAAcgcg > 1:1141778/1‑65 (MQ=255)
tCGGCTGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAAcgcg > 1:210928/1‑65 (MQ=255)
tCGGCTGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAAcgcg > 1:2146798/1‑65 (MQ=255)
tCGGCTGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAAcgcg > 1:2191686/1‑65 (MQ=255)
tCGGCTGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAAcgcg > 1:2239456/1‑65 (MQ=255)
tCGGCTGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAAcgcg > 1:1087411/1‑65 (MQ=255)
tCGGCTGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAAcgcg > 1:2419650/1‑65 (MQ=255)
tCGGCTGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAAcgc > 1:1933638/1‑64 (MQ=255)
tCGGCTGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAAcgc > 1:1972486/1‑64 (MQ=255)
tGACCATCAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAACGCGATTGt < 1:199458/65‑1 (MQ=255)
tGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAACGCGATTGt < 1:966846/65‑1 (MQ=255)
tGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAACGCGATTGt < 1:898895/65‑1 (MQ=255)
tGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAACGCGATTGt < 1:856643/65‑1 (MQ=255)
tGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAACGCGATTGt < 1:839449/65‑1 (MQ=255)
tGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAACGCGATTGt < 1:985609/65‑1 (MQ=255)
tGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAACGCGATTGt < 1:619479/65‑1 (MQ=255)
tGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAACGCGATTGt < 1:422278/65‑1 (MQ=255)
tGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAACGCGATTGt < 1:41469/65‑1 (MQ=255)
tGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAACGCGATTGt < 1:352120/65‑1 (MQ=255)
tGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAACGCGATTGt < 1:2635512/65‑1 (MQ=255)
tGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAACGCGATTGt < 1:2395942/65‑1 (MQ=255)
tGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAACGCGATTGt < 1:2064367/65‑1 (MQ=255)
tGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAACGCGATTGt < 1:1852209/65‑1 (MQ=255)
tGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAACGCGATTGt < 1:169446/65‑1 (MQ=255)
tGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAACGCGATTGt < 1:1612482/65‑1 (MQ=255)
tGACCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAACGCGATTGt < 1:1250558/65‑1 (MQ=255)
aCCAACAAGAATGTACCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAACGCGATTGt < 1:2501708/63‑1 (MQ=255)
|
ACCTGCCATTAACCAGCCGGGCATCAGCCCCCATTCAGGTCGGCTGACCAACAAGAATGTGCCACTTAATACTAACGTAGCGCCAATTCCGAGAAAATAACGCGATTGT > W3110S.gb/3614857‑3614965
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
