Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I2 R2
|
356 |
55.1 |
4139924 |
95.4% |
3949487 |
63.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
2,697,845 |
G→A |
G144D (GGT→GAT) |
yfhH → |
predicted DNA‑binding transcriptional regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 2,697,845 | 0 | G | A | 100.0%
| 237.1
/ NA
| 76 | G144D (GGT→GAT) | yfhH | predicted DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (49/27); total (49/27) |
CTGCATGAATGCGTAACAATGTTGCGCTCTGCGCGGCGGATAATTCTGACCGGTATTGGCGCTTCGGGTCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGATTGGCTTCAATGCTGCCGCAGTGCGCGA > W3110S.gb/2697778‑2697911
|
cTGCATGAATGCGTAACAATGTTGCGCTCTGCGCGGCGGATAATTCTGACCGGTATTGGCGCTTCGGATCt < 1:1069457/71‑1 (MQ=255)
tAACAATGTTGCGCTCTGCGCGGCGGATAATTCTGACCGGTATTGGCGGTTCGGATCTGGTGGCGCAAAAc > 1:1803713/1‑71 (MQ=255)
tAACAATGTTGCGCTCTGCGCGGCGGATAATTCTGACCGGTATTGGCGCTTCGGATCtggt > 1:920817/1‑61 (MQ=255)
tAACAATGTTGCGCTCTGCGCGGCGGATAATTCTGACCGGTATTGGCGCTTCGGATCtggt > 1:3936584/1‑61 (MQ=255)
tAACAATGTTGCGCTCTGCGCGGCGGATAATTCTGACCGGTATTGGCGCTTCGGATCtggt > 1:2952601/1‑61 (MQ=255)
tAACAATGTTGCGCTCTGCGCGGCGGATAATTCTGACCGGTATTGGCGCTTCGGATCtggt > 1:2569301/1‑61 (MQ=255)
tAACAATGTTGCGCTCTGCGCGGCGGATAATTCTGACCGGTATTGGCGCTTCGGATCTGGTGGCGCaaaa > 1:2343722/1‑70 (MQ=255)
tAACAATGTTGCGCTCTGCGCGGCGGATAATTCTGACCGGTATTGGCGCTTCGGATCTGGTGGCGCAAAAc > 1:2677636/1‑71 (MQ=255)
tAACAATGTTGCGCTCTGCGCGGCGGATAATTCTGACCGGTATTGGCGCTTCGGATCTGGTGGCGCAAAAc > 1:2904849/1‑71 (MQ=255)
tAACAATGTTGCGCTCTGCGCGGCGGATAATTCTGACCGGTATTGGCGCTTCGGATCTGGTGGCGCAAAAc > 1:1864757/1‑71 (MQ=255)
tAACAATGTTGCGCTCTGCGCGGCGGATAATTCTGACCGGTATTGGCGCTTCGGATCTGGTGGCGCAAAAc > 1:1329741/1‑71 (MQ=255)
gcgcTCTGCGCGGCGGATAATTCTGACCGGTATTGGCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTgg > 1:856226/1‑70 (MQ=255)
gcgcTCTGCGCGGCGGATAATTCTGACCGGTATTGGCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTgg > 1:2637171/1‑70 (MQ=255)
gcgcTCTGCGCGGCGGATAATTCTGACCGGTATTGGCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTgg > 1:3499017/1‑70 (MQ=255)
gcgcTCTGCGCGGCGGATAATTCTGACCGGTATTGGCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTgg > 1:1397161/1‑70 (MQ=255)
gcgcTCTGCGCGGCGGATAATTCTGACCGGTATTGGCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTgg > 1:2026422/1‑70 (MQ=255)
tGCGCGGCGGATAATTCTGACCGGTATTGGCGCTTCGGATCTGGTGGCGCAAAACTTTg < 1:2840014/59‑1 (MQ=255)
tGCGCGGCGGATAATTCTGACCGGTATTGGCGCTTCGGATCTGGTGGCGCAAAACTTTg < 1:2844844/59‑1 (MQ=255)
tGCGCGGCGGATAATTCTGACCGGTATTGGCGCTTCGGATCTGGTGGCGCAAAACTTTg < 1:3903744/59‑1 (MQ=255)
cggcggATAATTCTGACCGGTATTGGCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGaa < 1:2036250/71‑1 (MQ=255)
cggcggATAATTCTGACCGGTATTGGCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGaa < 1:2301824/71‑1 (MQ=255)
ggcggATAATTCTGACCGGTATTGGCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGaa < 1:1462825/70‑1 (MQ=255)
ggcggATAATTCTGACCGGTATTGGCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGaa < 1:3202951/70‑1 (MQ=255)
ggcggATAATTCTGACCGGTATTGGCGCTACGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGaa < 1:3293016/70‑1 (MQ=255)
ggATAATTCTGACCGGTATTGGCGCTTCGGATCTGGTGGCGCAAAATTTTg < 1:571965/51‑1 (MQ=255)
gATAATTCTGACCGGTATTGGCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGATTg < 1:418024/71‑1 (MQ=255)
gATAATTCTGACCGGTATTGGCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGATTg < 1:4028454/71‑1 (MQ=255)
gATAATTCTGACCGGTATTGGCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGATTg < 1:1531452/71‑1 (MQ=255)
gATAATTCTGACCGGTATTGGCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGATTg < 1:520715/71‑1 (MQ=255)
gATAATTCTGACCGGTATTGGCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGATTg < 1:1455162/71‑1 (MQ=255)
gATAATTCTGACCGGTATTGGCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGATTg < 1:16210/71‑1 (MQ=255)
aTTGGCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGATTGGCTTc > 1:3536519/1‑60 (MQ=255)
ttGGCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAg < 1:111993/50‑1 (MQ=255)
ttGGCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGATTGGCTTCAATGCTGCCg > 1:653354/1‑69 (MQ=255)
ttGGCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGATTGGCTTCAATGCTGCCg > 1:1490111/1‑69 (MQ=255)
ttGGCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGATTGGCTTCAATGCTGCCg > 1:1297359/1‑69 (MQ=255)
ttGGCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGATTGGCTTCAATGCTGCCg > 1:3136777/1‑69 (MQ=255)
ttGGCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGATTGGCTTCAATGCTGCCg > 1:3642906/1‑69 (MQ=255)
ttGGCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGATTGGCTTCAATGCTGCCg > 1:1133910/1‑69 (MQ=255)
ttGGCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGATTGGCTTCAATGCTGCCg > 1:45632/1‑69 (MQ=255)
ttGGCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGATTGGCTTCAATGCTGCCg > 1:2719075/1‑69 (MQ=255)
ttGGCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGATTGGCTTCAATGCTGCCg > 1:1544314/1‑69 (MQ=255)
ttGGCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGATTGGCTTCAATGCTGCCg > 1:160628/1‑69 (MQ=255)
ttGGCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGATTGGCTTCAATGCTGCCg > 1:1372300/1‑69 (MQ=255)
ttGGCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGATTGGCTTCAATGCTGCCg > 1:2416809/1‑69 (MQ=255)
ttGGCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGATTGGCTTCAATGCTGCCg > 1:2426530/1‑69 (MQ=255)
ttGGCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGATTGGCTTCAATGCTGCCg > 1:2555116/1‑69 (MQ=255)
ttGGCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGATTGGCTTCAATGCTGCCg > 1:136522/1‑69 (MQ=255)
ttGGCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGATTGGCTTCAATGCTGCCg > 1:2595744/1‑69 (MQ=255)
ttGGCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGATTGGCTTCAATGCTGCCg > 1:2612484/1‑69 (MQ=255)
ttGGCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGATTGGCTTCAATGCTGCCg > 1:2744388/1‑69 (MQ=255)
ggCGCTTCGGATCTGGTTGCGCAAAACTTTGCCTGGAAGCtg < 1:3335123/42‑1 (MQ=38)
ggCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCtg < 1:3011003/42‑1 (MQ=255)
ggCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCtg < 1:2442065/42‑1 (MQ=255)
ggCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCtg < 1:684596/42‑1 (MQ=255)
ggCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGAt > 1:3078836/1‑50 (MQ=255)
ggCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGAt > 1:3694308/1‑50 (MQ=255)
ggCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGAt > 1:3706957/1‑50 (MQ=255)
ggCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGAt > 1:4065310/1‑50 (MQ=255)
ggCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGAt > 1:2351936/1‑50 (MQ=255)
ggCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGATTGGCTTCAATGCTGCCGCAGt > 1:129956/1‑71 (MQ=255)
ggCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGATTGGCTTCAATGCTGCCGCAGt > 1:3183247/1‑71 (MQ=255)
ggCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGATTGGCTTCAATGCTGCCGCAGt > 1:2652056/1‑71 (MQ=255)
ggCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGATTGGCTTCAATGCTGCCGCAGt > 1:850544/1‑71 (MQ=255)
ggCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGATTGGCTTCAATGCTGCCGCAGt > 1:739697/1‑71 (MQ=255)
ggCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGATTGGCTTCAATGCTGCCGCAGt > 1:2158433/1‑71 (MQ=255)
ggCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGATTGGCTTCAATGCTGCCGCAGt > 1:3253222/1‑71 (MQ=255)
ggCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGATTGGCTTCAATGCTGCCGCAGt > 1:2631156/1‑71 (MQ=255)
ggCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGATTGGCTTCAATGCTGCCGCAGt > 1:3305679/1‑71 (MQ=255)
ggCGCTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGATTGGCTTCAATGCTGCCGCAGt > 1:2579005/1‑71 (MQ=255)
cTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGATTGGCTTCAATGCTGCCGCAGTgcgc < 1:2899975/71‑1 (MQ=255)
cTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGATTGGCTTCAATGCTGCCGCAGTgcgc < 1:1841630/71‑1 (MQ=255)
cTTCGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGATTGGCTTCAATGCTGCCGCAGTgcgc < 1:2511885/71‑1 (MQ=255)
cGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGATTGGCTTCAATGCTGCCGCAGTGCGCGa < 1:2102350/70‑1 (MQ=255)
cGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGATTGGCTTCAATGCTGCCGCAGTGCGCGa < 1:604720/70‑1 (MQ=255)
cGGATCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGATTGGCTTCAATGCTGCCGCAGTGCGCGa < 1:394575/70‑1 (MQ=255)
|
CTGCATGAATGCGTAACAATGTTGCGCTCTGCGCGGCGGATAATTCTGACCGGTATTGGCGCTTCGGGTCTGGTGGCGCAAAACTTTGCCTGGAAGCTGATGAAGATTGGCTTCAATGCTGCCGCAGTGCGCGA > W3110S.gb/2697778‑2697911
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
