Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I1 R1
|
122 |
92.7 |
4382561 |
94.3% |
4132755 |
66.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
2,681,918 |
A→G |
R598R (CGT→CGC) |
yhgF ← |
predicted transcriptional accessory protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,681,918 | 0 | A | G | 100.0%
| 331.6
/ NA
| 89 | R598R (CGT→CGC) | yhgF | predicted transcriptional accessory protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (56/33); total (56/33) |
ATGATGTCGGTTACCGTCGGCACACCGAATTTCTCATCAGTAAAGTCAGACGCTTTCAGGTTACGCAGTTCGCTGCTGTTACCCATCAGATCTTTCAGTGCCTGCTGTGTTGCTGCCAGAATG > minE/2681856‑2681978
|
atgatgTCGGTTACCGTCGGCACACCGAATTTCTCATCAGTAAAGTCAGACGCTTTCAGGTTGCGCAGtt < 1:2580886/70‑1 (MQ=255)
atgatgTCGGTTACCGTCGGCACACCGAATTTCTCATCAGTAAAGTCAGACGCTTTCAGGTTGCGCAGtt < 1:1273354/70‑1 (MQ=255)
atgatgTCGGTTACCGTCGGCACACCGAATTTCTCATCAGTAAAGTCAGACGCTTTCAGGTTGCGCAGtt < 1:1761933/70‑1 (MQ=255)
atgTCGGTTACCGTCGGCACACCGAATTTCTCATCAGTAAAGTCAGACGCTTTCAGGTTGCGCAGTTCgct < 1:924746/71‑1 (MQ=255)
gCACACCGAATTTCTCATCAGTAAAGTCAGACGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGa < 1:1011923/71‑1 (MQ=255)
gCACACCGAATTTCTCATCAGTAAAGTCAGACGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGa < 1:1829140/71‑1 (MQ=255)
gCACACCGAATTTCTCATCAGTAAAGTCAGACGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGa < 1:2836255/71‑1 (MQ=255)
cacaCCGAATTTCTCATCAGTAAAGTCAGACGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCAt > 1:3184710/1‑66 (MQ=255)
cacaCCGAATTTCTCATCAGTAAAGTCAGACGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCAt > 1:3274548/1‑66 (MQ=255)
cacaCCGAATTTCTCATCAGTAAAGTCAGACGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCAt > 1:3038305/1‑66 (MQ=255)
cacaCCGAATTTCTCATCAGTAAAGTCAGACGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCAt > 1:2888776/1‑66 (MQ=255)
cacaCCGAATTTCTCATCAGTAAAGTCAGACGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCAt > 1:3833324/1‑66 (MQ=255)
cacaCCGAATTTCTCATCAGTAAAGTCAGACGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCAt > 1:3919452/1‑66 (MQ=255)
cacaCCGAATTTCTCATCAGTAAAGTCAGACGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCAt > 1:1609272/1‑66 (MQ=255)
cacaCCGAATTTCTCATCAGTAAAGTCAGACGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCAt > 1:3924636/1‑66 (MQ=255)
cacaCCGAATTTCTCATCAGTAAAGTCAGACGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCAt > 1:287132/1‑66 (MQ=255)
cacaCCGAATTTCTCATCAGTAAAGTCAGACGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCAt > 1:1273276/1‑66 (MQ=255)
cacaCCGAATTTCTCATCAGTAAAGTCAGACGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCAt > 1:1182980/1‑66 (MQ=255)
cacaCCGAATTTCTCATCAGTAAAGTCAGACGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCAt > 1:2557730/1‑66 (MQ=255)
tctcATCAGTAAAGTCAGACGCTTTCAGGTTGCGCAGtt > 1:2398878/1‑39 (MQ=255)
tctcATCAGTAAAGTCAGACGCTTTCAGGTTGCGCAGtt > 1:2754220/1‑39 (MQ=255)
tctcATCAGTAAAGTCAGACGCTTTCAGGTTGCGCAGtt > 1:3015774/1‑39 (MQ=255)
tctcATCAGTAAAGTCAGACGCTTTCAGGTTGCGCAGtt > 1:2287437/1‑39 (MQ=255)
tctcATCAGTAAAGTCAGACGCTTTCAGGTTGCGCAGtt > 1:2618454/1‑39 (MQ=255)
tctcATCAGTAAAGTCAGACGCTTTCAGGTTGCGCAGtt > 1:1993485/1‑39 (MQ=255)
tctcATCAGTAAAGTCAGACGCTTTCAGGTTGCGCAGtt > 1:3533948/1‑39 (MQ=255)
tctcATCAGTAAAGTCAGACGCTTTCAGGTTGCGCAGtt > 1:4124192/1‑39 (MQ=255)
tctcATCAGTAAAGTCAGACGCTTTCAGGTTGCGCAGtt > 1:4362716/1‑39 (MQ=255)
tctcATCAGTAAAGTCAGACGCTTTCAGGTTGCGCAGtt > 1:738088/1‑39 (MQ=255)
tctcATCAGTAAAGTCAGACGCTTTCAGGTTGCGCAGtt > 1:1099667/1‑39 (MQ=255)
aGTAAAGTCAGACGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTc < 1:3290374/58‑1 (MQ=255)
aGTAAAGTCAGACGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTc < 1:302725/58‑1 (MQ=255)
aGTAAAGTCAGACGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTc < 1:3506359/58‑1 (MQ=255)
aGTAAAGTCAGACGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTc < 1:2874570/58‑1 (MQ=255)
aGTAAAGTCAGACGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTc < 1:3608621/58‑1 (MQ=255)
aGTAAAGTCAGACGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTc < 1:4062645/58‑1 (MQ=255)
aGTAAAGTCAGACGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTc < 1:102492/58‑1 (MQ=255)
aGTAAAGTCAGACGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTc < 1:2548810/58‑1 (MQ=255)
aGTAAAGTCAGACGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTc < 1:2017571/58‑1 (MQ=255)
aGTAAAGTCAGACGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTc < 1:1720/58‑1 (MQ=255)
aGTAAAGTCAGACGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTc < 1:1674137/58‑1 (MQ=255)
aGTAAAGTCAGACGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTc < 1:1402417/58‑1 (MQ=255)
aGTAAAGTCAGACGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTc < 1:1399255/58‑1 (MQ=255)
aGTAAAGTCAGACGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTc < 1:2292641/58‑1 (MQ=255)
aGTAAAGTCAGACGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTc < 1:1187939/58‑1 (MQ=255)
aGTAAAGTCAGACGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTc < 1:2442283/58‑1 (MQ=255)
gTAAAGTCAGACGCTTTCAGGTTGCGCAGTTCGCTTCTGTTACCCATCAGATCTTTc < 1:491150/57‑1 (MQ=255)
cggcAGACGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTCAGTGCCTGCTGTGTtgct < 1:3374204/68‑1 (MQ=255)
aGTCAGACGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTCAGTGCCTGCTGTGTtgct < 1:712038/71‑1 (MQ=255)
aGTCAGACGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTCAGTGCCTGCTGTGTtgct < 1:3604063/71‑1 (MQ=255)
tCAGCCGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTCAGTGCCTGCTGTGTtgctgc > 1:2446756/1‑71 (MQ=255)
tCAGACGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTCAGTGCctgc > 1:2208591/1‑60 (MQ=255)
tCAGACGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTCAGTGCCTGCTGTGTtgctgc > 1:450861/1‑71 (MQ=255)
tCAGACGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTCAGTGCCTGCTGTGTtgctgc > 1:465766/1‑71 (MQ=255)
tCAGACGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTCAGTGCCTGCTGTGTtgctgc > 1:4308075/1‑71 (MQ=255)
tCAGACGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTCAGTGCCTGCTGTGTtgctgc > 1:3708660/1‑71 (MQ=255)
tCAGACGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTCAGTGCCTGCTGTGTtgctgc > 1:952597/1‑71 (MQ=255)
tCAGACGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTCAGTGCCTGCTGTGTtgctgc > 1:3566188/1‑71 (MQ=255)
tCAGACGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTCAGTGCCTGCTGTGTtgctgc > 1:1873906/1‑71 (MQ=255)
tCAGACGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTCAGTGCCTGCTGTGTtgctgc > 1:1993015/1‑71 (MQ=255)
tCAGACGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTCAGTGCCTGCTGTGTtgctg > 1:1166745/1‑70 (MQ=255)
acAGACGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCAACAGa > 1:1790452/2‑45 (MQ=38)
cGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAg > 1:3132435/1‑39 (MQ=255)
cGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTCAGTGCCTGCTGTGTTGCTGCCAGaa > 1:4199344/1‑71 (MQ=255)
cGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTCAGTGCCTGCTGTGTTGCTGCCAGaa > 1:2745036/1‑71 (MQ=255)
cGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTCAGTGCCTGCTGTGTTGCTGCCAGaa > 1:109272/1‑71 (MQ=255)
cGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTCAGTGCCTGCTGTGTTGCTGCCAGaa > 1:882200/1‑71 (MQ=255)
cGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTCAGTGCCTGCTGTGTTGCTGCCAGaa > 1:845077/1‑71 (MQ=255)
cGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTCAGTGCCTGCTGTGTTGCTGCCAGaa > 1:2790517/1‑71 (MQ=255)
cGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTCAGTGCCTGCTGTGTTGCTGCCAGaa > 1:697677/1‑71 (MQ=255)
cGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTCAGTGCCTGCTGTGTTGCTGCCAGaa > 1:2352768/1‑71 (MQ=255)
cGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTCAGTGCCTGCTGTGTTGCTGCCAGaa > 1:2345883/1‑71 (MQ=255)
cGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTCAGTGCCTGCTGTGTTGCTGCCAGaa > 1:4350581/1‑71 (MQ=255)
cGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTCAGTGCCTGCTGTGTTGCTGCCAGaa > 1:4313662/1‑71 (MQ=255)
cGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTCAGTGCCTGCTGTGTTGCTGCCAGaa > 1:2229836/1‑71 (MQ=255)
cGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTCAGTGCCTGCTGTGTTGCTGCCAGaa > 1:4069904/1‑71 (MQ=255)
cGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTCAGTGCCTGCTGTGTTGCTGCCAGaa > 1:2220176/1‑71 (MQ=255)
cGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTCAGTGCCTGCTGTGTTGCTGCCAGaa > 1:3039293/1‑71 (MQ=255)
cGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTCAGTGCCTGCTGTGTTGCTGCCAGaa > 1:3182456/1‑71 (MQ=255)
cGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTCAGTGCCTGCTGTGTTGCTGCCAGaa > 1:3771587/1‑71 (MQ=255)
cGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTCAGTGCCTGCTGTGTTGCTGCCAGaa > 1:2163615/1‑71 (MQ=255)
cGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTCAGTGCCTGCTGTGTTGCTGCCAGaa > 1:3664323/1‑71 (MQ=255)
cGCTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTCAGTGCCTGCTGTGTTGCTGCCAGa > 1:2966667/1‑70 (MQ=255)
cTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTCAGTGCCTGCTGTGTTGCTGCCAGAATg < 1:4107692/71‑1 (MQ=255)
cTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTCAGTGCCTGCTGTGTTGCTGCCAGAATg < 1:4057062/71‑1 (MQ=255)
cTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTCAGTGCCTGCTGTGTTGCTGCCAGAATg < 1:2815744/71‑1 (MQ=255)
cTTTCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTCAGTGCCTGCTGTGTTGCTGCCAGAATg < 1:3306570/71‑1 (MQ=255)
tttCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTCAGTGCCTGCTGTGTTGCTGCCAGAATg < 1:1361461/70‑1 (MQ=255)
tttCAGGTTGCGCAGTTCGCTGCTGTTACCCATCAGATCTTTCAGTGCCTGCTGTGTTGCTGCCAGAATg < 1:3435147/70‑1 (MQ=255)
|
ATGATGTCGGTTACCGTCGGCACACCGAATTTCTCATCAGTAAAGTCAGACGCTTTCAGGTTACGCAGTTCGCTGCTGTTACCCATCAGATCTTTCAGTGCCTGCTGTGTTGCTGCCAGAATG > minE/2681856‑2681978
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
