Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I1 R2
|
146 |
74.7 |
3299319 |
84.8% |
2797822 |
66.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
668,428 |
C→A |
T589K (ACG→AAG) |
uup → |
fused predicted transporter subunits and ATP‑binding components of ABC superfamily |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 668,428 | 0 | C | A | 100.0%
| 204.0
/ NA
| 61 | T589K (ACG→AAG) | uup | fused predicted transporter subunits and ATP‑binding components of ABC superfamily |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (54/7); total (54/7) |
CGCGAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATA > minE/668364‑668493
|
cgcgAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGAAGCAAGt > 1:1075620/1‑71 (MQ=255)
cgcgAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGAAGCAAGt > 1:2616379/1‑71 (MQ=255)
gAGGCGAAGCTGGAAGCCCTACAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAg < 1:1028921/66‑1 (MQ=255)
gAGGCGAAGCTGGAAGCCCTACAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAg < 1:1131701/66‑1 (MQ=255)
gAGGCGAAGCTGGAAGCCCTACAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAg < 1:344071/66‑1 (MQ=255)
gAGGCGAAGCTGGAAGCCCTACAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAg < 1:250483/66‑1 (MQ=255)
gAGGCGAAGCTGGAAGCCCTACAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAg < 1:2397930/66‑1 (MQ=255)
gAGGCGAAGCTGGAAGCCCTACAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAg < 1:1721787/66‑1 (MQ=255)
gAGGCGAAGCTGGAAGCCCTACAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAg < 1:1369546/66‑1 (MQ=255)
gAGGCGAAGCTGGAAGCCCTACAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGc > 1:3100626/1‑67 (MQ=255)
gAGGCGAAGCTGGAAGCCCTACAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGa > 1:70369/1‑70 (MQ=255)
gAGGCGAAGCTGGAAGCCCTACAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGa > 1:468017/1‑70 (MQ=255)
gAGGCGAAGCTGGAAGCCCTACAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGa > 1:3153086/1‑70 (MQ=255)
gAGGCGAAGCTGGAAGCCCTACAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGAc > 1:3094918/1‑71 (MQ=255)
gAGGCGAAGCTGGAAGCCCTACAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGAc > 1:1663546/1‑71 (MQ=255)
gAGGCGAAGCTGGAAGCCCTACAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGAc > 1:1794403/1‑71 (MQ=255)
gAGGCGAAGCTGGAAGCCCTACAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGAc > 1:524390/1‑71 (MQ=255)
gAGGCGAAGCTGGAAGCCCTACAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGAc > 1:2156805/1‑71 (MQ=255)
gAGGCGAAGCTGGAAGCCCTACAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGAc > 1:2173504/1‑71 (MQ=255)
gCTGGAAGCCCTACAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTGAGCCGCATGAGCAGACGCAAAAAg > 1:4402/1‑71 (MQ=255)
gCTGGAAGCCCTACAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAg > 1:1358436/1‑71 (MQ=255)
gCTGGAAGCCCTACAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAg > 1:539094/1‑71 (MQ=255)
gCTGGAAGCCCTACAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAg > 1:1300691/1‑71 (MQ=255)
gCTGGAAGCCCTACAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAg > 1:2180292/1‑71 (MQ=255)
aCAGAAGCAAGTGGCGTATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGata > 1:2745741/1‑71 (MQ=255)
aCAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGt > 1:3131392/1‑60 (MQ=255)
aCAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGata > 1:356921/1‑71 (MQ=255)
aCAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGata > 1:878364/1‑71 (MQ=255)
aCAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGata > 1:373767/1‑71 (MQ=255)
aCAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGata > 1:753407/1‑71 (MQ=255)
aCAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGata > 1:894850/1‑71 (MQ=255)
aCAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGata > 1:406644/1‑71 (MQ=255)
aCAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGata > 1:840566/1‑71 (MQ=255)
aCAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGata > 1:759512/1‑71 (MQ=255)
aCAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGata > 1:490393/1‑71 (MQ=255)
aCAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGata > 1:602821/1‑71 (MQ=255)
aCAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGata > 1:663218/1‑71 (MQ=255)
aCAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGata > 1:697637/1‑71 (MQ=255)
aCAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGata > 1:734422/1‑71 (MQ=255)
aCAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGata > 1:2012337/1‑71 (MQ=255)
aCAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGata > 1:1046326/1‑71 (MQ=255)
aCAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGata > 1:1255128/1‑71 (MQ=255)
aCAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGata > 1:126108/1‑71 (MQ=255)
aCAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGata > 1:133836/1‑71 (MQ=255)
aCAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGata > 1:1426287/1‑71 (MQ=255)
aCAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGata > 1:1429906/1‑71 (MQ=255)
aCAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGata > 1:146037/1‑71 (MQ=255)
aCAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGata > 1:1497210/1‑71 (MQ=255)
aCAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGata > 1:1631201/1‑71 (MQ=255)
aCAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGata > 1:1649127/1‑71 (MQ=255)
aCAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGata > 1:3114099/1‑71 (MQ=255)
aCAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGata > 1:205278/1‑71 (MQ=255)
aCAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGata > 1:2141882/1‑71 (MQ=255)
aCAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGata > 1:2703015/1‑71 (MQ=255)
aCAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGata > 1:2801508/1‑71 (MQ=255)
aCAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGata > 1:2804331/1‑71 (MQ=255)
aCAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGata > 1:2837248/1‑71 (MQ=255)
aCAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGata > 1:2968509/1‑71 (MQ=255)
aCAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGata > 1:2972389/1‑71 (MQ=255)
aCAGAAGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGata > 1:304605/1‑71 (MQ=255)
aCAGAAGCAAGTGGCGGATGCTTCCATCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGata > 1:2723311/1‑71 (MQ=255)
|
CGCGAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATA > minE/668364‑668493
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
