Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I2 R2
|
356 |
55.1 |
4139924 |
95.4% |
3949487 |
63.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
2,350,543 |
G→A |
V337I (GTA→ATA) |
nrdA → |
ribonucleoside diphosphate reductase 1, alpha subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 2,350,543 | 0 | G | A | 100.0%
| 271.3
/ NA
| 83 | V337I (GTA→ATA) | nrdA | ribonucleoside diphosphate reductase 1, alpha subunit |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (29/54); total (29/54) |
GCCTGCTGGTGTTGAAAAACAACCGTGGTGTGGAAGGCAACCGCGTGCGTCATATGGACTACGGGGTACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTGAAGATATCACCCTGTT > W3110S.gb/2350478‑2350601
|
gCCTGCTGGTGTTGAAAAACAACCGTGGTGTGGAAGGCAACCGCGTGCGTCATATGGACTACGGGATACaa < 1:101708/71‑1 (MQ=255)
gCCTGCTGGTGTTGAAAAACAACCGTGGTGTGGAAGGCAACCGCGTGCGTCATATGGACTACGGGATACaa < 1:2463073/71‑1 (MQ=255)
gCCTGCTGGTGTTGAAAAACAACCGTGGTGTGGAAGGCAACCGCGTGCGTCATATGGACTACGGGATACaa < 1:3558464/71‑1 (MQ=255)
gCCTGCTGGTGTTGAAAAACAACCGTGGTGTGGAAGGCAACCGCGTGCGTCATATGGACTACGGGATACaa < 1:649379/71‑1 (MQ=255)
gCCTGCTGGTGTTGAAAAACAACCGTGGTGTGGAAGGCAACCGCGTGCGTCATATGGACTACGGGATACaa < 1:3839654/71‑1 (MQ=255)
ccTGCTGGTGTTGAAAAACAACCGTGGTGTGGAAGGCAACCGCGTGCGTCATATGGACTACGGGATACaa < 1:3254375/70‑1 (MQ=255)
gAAAAACTACCGTGGTGTGGAAGGCAACCGCGTGCGTCATATGGACTACGGGATACAAATCAACAAACTg < 1:3992957/70‑1 (MQ=255)
gAAAAACAACCGTGGTGTGGAAGGCAACCGCGTGCGTCATATGGACTACGGGATACAAATCAACAAACTg < 1:3836113/70‑1 (MQ=255)
gAAAAACAACCGTGGTGTGGAAGGCAACCGCGTGCGTCATATGGACTACGGGATACAAATCAACAAACTg < 1:2668857/70‑1 (MQ=255)
gAAAAACAACCGTGGTGTGGAAGGCAACCGCGTGCGTCATATGGACTACGGGATACAAATCAACAAACTg < 1:3594301/70‑1 (MQ=255)
gAAAAACAACCGTGGTGTGGAAGGCAACCGCGTGCGTCATATGGACTACGGGATACAAATCAACAAACTg < 1:1679444/70‑1 (MQ=255)
gAAAAACAACCGTGGTGTGGAAGGCAACCGCGTGCGTCATATGGACTACGGGATACAAATCAACAAACTg < 1:3401488/70‑1 (MQ=255)
gAAAAACAACCGTGGTGTGGAAGGCAACCGCGTGCGTCATATGGACTACGGGATACAAATCAACAAACTg < 1:3114569/70‑1 (MQ=255)
gAAAAACAACCGTGGTGTGGAAGGCAACCGCGTGCGTCATATGGACTACGGGATACAAATCAACAAACTg < 1:1933904/70‑1 (MQ=255)
gAAAAACAACCGTGGTGTGGAAGGCAACCGCGTGCGTCATATGGACTACGGGATACAAATCAACAAACTg < 1:206116/70‑1 (MQ=255)
gAAAAACAACCGTGGTGTGGAAGGCAACCGCGTGCGTCATATGGACTACGGGATACAAATCAACAAACTg < 1:2700078/70‑1 (MQ=255)
gAAAAACAACCGTGGTGTGGAAGGCAACCGCGTGCGTCATATGGACTACGGGATACAAATCAACAAACTg < 1:2346470/70‑1 (MQ=255)
gAAAAACAACCGTGGTGTGGAAGGCAACCGCGTGCGTCATATGGACTACGGGATACAAATCAACAAACTg < 1:2685815/70‑1 (MQ=255)
gAAAAACAACCGTGGTGTGGAAGGCAACCGCGTGCGTCATATGGACTACGGGATACAAATCAACAAACTg < 1:1575874/70‑1 (MQ=255)
gAAAAACAACCGTGGTGTGGAAGGCAACCGCGTGCGTCATATGGACTACGGGATACAAATCAACAAACTg < 1:3838977/70‑1 (MQ=255)
gAAAAACAACCGTGGTGTGGAAGGCAACCGCGTGCGTCATATGGACTACGGGATACAAATCAACAAACTg < 1:1481483/70‑1 (MQ=255)
gAAAAACAACCGTGGTGTGGAAGGCAACCGCGTGCGTCATATGGACTACGGGATACAAATCAACAAACTg < 1:110991/70‑1 (MQ=255)
gAAAAACAACCGTGGTGTGGAAGGCAACCGCGTGCGTCATATGGACTACGGGATACAAATCAACAAACTg < 1:1473831/70‑1 (MQ=255)
gAAAAACAACCGTGGTGTGGAAGGCAACCGCGTGCGTCATATGGACTACGGGATACAAATCAACAAACTg < 1:672646/70‑1 (MQ=255)
gAAAAACAACCGTGGTGTGGAAGGCAACCGCGTGCGTCATATGGACTACGGGATACAAATCAACAAACTg < 1:1365002/70‑1 (MQ=255)
gAAAAACAACCGTGGTGTGGAAGGCAACCGCGTGCGTCATATGGACTACGGGATACAAATCAACAAACTg < 1:1360775/70‑1 (MQ=255)
aaaaaCAACCGTGGTGTGGAAGGCAACCGCGTGCGTCATATGGACTACGGGATACAAATCAACAAACTGa < 1:15345/70‑1 (MQ=255)
aaaaCAACCGTGGTGTGGAAGGCAACCGCGTGCGTCATATGGACTACGGGATACAAATCAACAAACTGATg < 1:2077463/71‑1 (MQ=255)
aGGCAACCGCGTGCGTCATATGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGagtc > 1:2750961/1‑68 (MQ=255)
aGGCAACCGCGTGCGTCATATGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGagtc > 1:1155202/1‑68 (MQ=255)
aGGCAACCGCGTGCGTCATATGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGagtc > 1:2072840/1‑68 (MQ=255)
aGGCAACCGCGTGAGTCATATGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGagtc > 1:1657976/1‑68 (MQ=255)
cAACCGCGTGCGTCATATGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGaaa > 1:274909/1‑67 (MQ=255)
cAACCGCGTGCGTCATATGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGaaa > 1:2314768/1‑67 (MQ=255)
cAACCGCGTGCGTCATATGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGaaa > 1:3456372/1‑67 (MQ=255)
aCCGCGTGCGTCATATGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTGaa < 1:4077315/71‑1 (MQ=255)
aCCGCGTGCGTCATATGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTGaa < 1:3343186/71‑1 (MQ=255)
aCCGCGTGCGTCATATGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTGaa < 1:697916/71‑1 (MQ=255)
aCCGCGTGCGTCATATGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTGaa < 1:861982/71‑1 (MQ=255)
aCCGCGTGCGTCATATGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTGaa < 1:1019522/71‑1 (MQ=255)
aCCGCGTGCGTCATATGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTGaa < 1:1024359/71‑1 (MQ=255)
aCCGCGTGCGTCATATGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTGaa < 1:1087696/71‑1 (MQ=255)
aCCGCGTGCGTCATATGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTGaa < 1:1567013/71‑1 (MQ=255)
aCCGCGTGCGTCATATGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTGaa < 1:193078/71‑1 (MQ=255)
aCCGCGTGCGTCATATGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTGaa < 1:1716274/71‑1 (MQ=255)
ccGGGTGCGTCATATGGACTACGGGATACAAATCCACAAACTGATGTTTACCCGTCTGCTGAAAGGTGaa < 1:960645/70‑1 (MQ=255)
ccGCGTGCGTCATATGGACTACGGGATACAAATCAACAAACTGATg > 1:3687097/1‑46 (MQ=255)
ccGCGTGCGTCATATGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTg > 1:3842707/1‑68 (MQ=255)
ccGCGTGCGTCATATGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTg > 1:3723176/1‑68 (MQ=255)
ccGCGTGCGTCATATGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTg > 1:3548234/1‑68 (MQ=255)
ccGCGTGCGTCATATGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTg > 1:3007600/1‑68 (MQ=255)
cgcgTGCGTCATATGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTGAAGa < 1:4032313/71‑1 (MQ=255)
cgcgTGCGTCATATGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTGAAGa < 1:3441627/71‑1 (MQ=255)
cgcgTGCGTCATATGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTGAAGa < 1:2299087/71‑1 (MQ=255)
cgcgTGCGTCATATGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTGAAGa < 1:1916725/71‑1 (MQ=255)
cgcgTGCGTCATATGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTGAAGa < 1:59864/71‑1 (MQ=255)
cgcgTGCGTCATATGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTGAAGa < 1:1662212/71‑1 (MQ=255)
cgcgTGCGTCATATGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTGAAGa < 1:4001412/71‑1 (MQ=255)
cgcgTGCGTCATATGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTGAAGa < 1:636833/71‑1 (MQ=255)
cgcgTGCGTCATATGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTGAAGa < 1:695322/71‑1 (MQ=255)
cgcgTGCGTCATATGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTGAAGa < 1:2559983/71‑1 (MQ=255)
cgcgTGCGTCATATGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTGAAGa < 1:1315063/71‑1 (MQ=255)
tCATATGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTGAAGATATCAccc < 1:664022/71‑1 (MQ=255)
atatGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTGAAGATATCACCCTg < 1:526173/71‑1 (MQ=255)
atatGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTGAAGATATCACCCTg < 1:814152/71‑1 (MQ=255)
tatGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTGAAGATATCACCCTg < 1:1672264/70‑1 (MQ=255)
atGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTGAAGATATCCCCCTGtt > 1:1909756/1‑71 (MQ=255)
atGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTGAAGATATCACCCTGtt > 1:721221/1‑71 (MQ=255)
atGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTGAAGATATCACCCTGtt > 1:571642/1‑71 (MQ=255)
atGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTGAAGATATCACCCTGtt > 1:342415/1‑71 (MQ=255)
atGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTGAAGATATCACCCTGtt > 1:1418748/1‑71 (MQ=255)
atGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTGAAGATATCACCCTGtt > 1:1461112/1‑71 (MQ=255)
atGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTGAAGATATCACCCTGtt > 1:1933174/1‑71 (MQ=255)
atGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTGAAGATATCACCCTGt > 1:391977/1‑70 (MQ=255)
atGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTGAAGATATCACACTGtt > 1:4010915/1‑71 (MQ=255)
tGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTGAAGATATc > 1:736436/1‑62 (MQ=255)
tGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTGAAGATATCACCCTGtt > 1:1404365/1‑70 (MQ=255)
tGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTGAAGATATCACCCTGtt > 1:625530/1‑70 (MQ=255)
tGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTGAAGATATCACCCTGtt > 1:1148018/1‑70 (MQ=255)
tGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTGAAGATATCACCCTGtt > 1:1944131/1‑70 (MQ=255)
tGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTGAAGATATCACCCTGtt > 1:2067651/1‑70 (MQ=255)
tGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTGAAGATATCACCCTGtt > 1:1576435/1‑70 (MQ=255)
tGGACTACGGGATACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTGAAGATATCACCCTGtt > 1:2359836/1‑70 (MQ=255)
gggaTACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTGAAGATATCACCCTg < 1:3344943/60‑1 (MQ=255)
|
GCCTGCTGGTGTTGAAAAACAACCGTGGTGTGGAAGGCAACCGCGTGCGTCATATGGACTACGGGGTACAAATCAACAAACTGATGTATACCCGTCTGCTGAAAGGTGAAGATATCACCCTGTT > W3110S.gb/2350478‑2350601
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
