Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I1 R1
|
122 |
92.7 |
4382561 |
94.3% |
4132755 |
66.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
1,081,858 |
T→C |
N104S (AAC→AGC) |
ydhY ← |
predicted 4Fe‑4S ferridoxin‑type protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,081,858 | 0 | T | C | 100.0%
| 373.7
/ NA
| 96 | N104S (AAC→AGC) | ydhY | predicted 4Fe‑4S ferridoxin‑type protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (63/33); total (63/33) |
ACGGCAGGTGTCCGCGGTATAGTTGAGATCGCCATACAGGCCGCCGCCAGAGCCAACCCCGTTGTCGCCAAAGAAATAATTGCGATGGATTTTGATACGGGAGAAGAATGTCCCTAC > minE/1081797‑1081913
|
aCGGCAGGTGTCCGCGGTATAGTTGAGATCGCCATACAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCa < 1:1214744/70‑1 (MQ=255)
aCGGCAGGTGTCCGCGGTATAGTTGAGATCGCCATACAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCa < 1:3346765/70‑1 (MQ=255)
aCGGCAGGTGTCCGCGGTATAGTTGAGATCGCCATACAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCa < 1:3550063/70‑1 (MQ=255)
tgtCCGCGGTATAGTTGAGATCGCCATACAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAaataa > 1:724473/1‑71 (MQ=255)
tgtCCGCGGTATAGTTGAGATCGCCATACAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAaataa > 1:301698/1‑71 (MQ=255)
tgtCCGCGGTATAGTTGAGATCGCCATACAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAaataa > 1:2464998/1‑71 (MQ=255)
tgtCCGCGGTATAGTTGAGATCGCCATACAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAaataa > 1:1918371/1‑71 (MQ=255)
tgtCCGCGGTATAGTTGAGATCGCCATACAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAaataa < 1:1495874/71‑1 (MQ=255)
gtacgcgGTATAGTTGAGATCGCCATACAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAaataat > 1:3507881/4‑71 (MQ=255)
gtCCGCGGTATAGTTGAGATCGCCATACAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAaataat > 1:1887555/1‑71 (MQ=255)
gtCCGCGGTATAGTTGAGATCGCCATACAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAaataat > 1:2924727/1‑71 (MQ=255)
gtCCGCGGTATAGTTGAGATCGCCATACAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAaataat > 1:2902224/1‑71 (MQ=255)
gtCCGCGGTATAGTTGAGATCGCCATACAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAaataat > 1:2349924/1‑71 (MQ=255)
gtCCGCGGTATAGTTGAGATCGCCATACAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAaataat > 1:2211582/1‑71 (MQ=255)
gtCCGCGGTATAGTTGAGATCGCCATACAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAaataat > 1:3539282/1‑71 (MQ=255)
gtCCGCGGTATAGTTGAGATCGCCATACAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAaataat > 1:1793292/1‑71 (MQ=255)
gtCCGCGGTATAGTTGAGATCGCCATACAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAaataat > 1:547740/1‑71 (MQ=255)
gtCCGCGGTATAGTTGAGATCGCCATACAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAaataat > 1:1476875/1‑71 (MQ=255)
gtCCGCGGTATAGTTGAGATCGCCATACAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAaataat > 1:3853103/1‑71 (MQ=255)
gtCCGCGGTATAGTTGAGATCGCCATACAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAaataa > 1:1552098/1‑70 (MQ=255)
cgcgGTATAGTTGAGATCGCCATACAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGc > 1:998307/1‑71 (MQ=255)
cgcgGTATAGTTGAGATCGCCATACAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGc > 1:1799862/1‑71 (MQ=255)
cgcgGTATAGTTGAGATCGCCATACAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGc > 1:315129/1‑71 (MQ=255)
cgcgGTATAGTTGAGATCGCCATACAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGc > 1:2712293/1‑71 (MQ=255)
cgcgGTATAGTTGAGATCGCCATACAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGc > 1:3037038/1‑71 (MQ=255)
cgcgGTATAGTTGAGATCGCCATACAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGc > 1:2047732/1‑71 (MQ=255)
gagaTCGCCATACAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGa > 1:1390462/1‑61 (MQ=255)
gagaTCGCCATACAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGa > 1:4265751/1‑61 (MQ=255)
gagaTCGCCATACAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGa > 1:2459931/1‑61 (MQ=255)
gagaTCGCCATACAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGa > 1:2075584/1‑61 (MQ=255)
gagaTCGCCATACAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGa > 1:531104/1‑61 (MQ=255)
gagaTCGCCATACAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGa > 1:3615645/1‑61 (MQ=255)
gagaTCGCCATACAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGa > 1:3755029/1‑61 (MQ=255)
gagaTCGCCATACAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGa > 1:837341/1‑61 (MQ=255)
gagaTCGCCATACAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGa > 1:1648489/1‑61 (MQ=255)
gagaTCGCCATACAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGATGGATTTTGa > 1:770799/1‑71 (MQ=255)
gagaTCGCCATACAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGATGGATTTTGa > 1:1488487/1‑71 (MQ=255)
tACAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGATGGATTTTGATACGGgag < 1:2653277/69‑1 (MQ=255)
tACAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGATGGATTTTGATACGGgag < 1:900706/69‑1 (MQ=255)
tACAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGATGGATTTTGATACGGgag < 1:4035042/69‑1 (MQ=255)
tACAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGATGGATTTTGATACGGgag < 1:2969017/69‑1 (MQ=255)
cAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGATGGATTTTGATACGGGagaag < 1:3353477/70‑1 (MQ=255)
cAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGATGGATTTTGATACGGGagaag > 1:3355294/1‑70 (MQ=255)
cAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGATGGATTTTGATACGGGagaag > 1:3364180/1‑70 (MQ=255)
cAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGATGGATTTTGATACGGGagaag > 1:3514186/1‑70 (MQ=255)
cAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGATGGATTTTGATACGGGagaag > 1:76769/1‑70 (MQ=255)
cAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGATGGATTTTGATACGGGagaag > 1:1035921/1‑70 (MQ=255)
cAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGATGGATTTTGATACGGGagaag > 1:1581032/1‑70 (MQ=255)
cAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGATGGATTTTGATACGGGagaag > 1:1836199/1‑70 (MQ=255)
cAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGATGGATTTTGATACGGGagaag < 1:2255289/70‑1 (MQ=255)
cAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGATGGATTTTGATACGGGagaag < 1:2471906/70‑1 (MQ=255)
cAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGATGGATTTTGATACGGGagaag > 1:2692532/1‑70 (MQ=255)
cAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGATGGATTTTGATACGGGagaag > 1:2839440/1‑70 (MQ=255)
cAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGATGGATTTTGATACGGGagaag < 1:1113273/70‑1 (MQ=255)
cAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGATGGATTTTGATACGGGagaag > 1:2867525/1‑70 (MQ=255)
cAGGCCGCCGCCAGAGCCAACCCCGCTGTCGCC‑‑‑‑AAATAATTGCGATGGATTTTGATACGGGAGAAGAATGt < 1:3260894/71‑1 (MQ=255)
cAGGCCGCCGCCAGAGACAACCCCGCTGTCGCCAAAGAaaaaat > 1:1428613/1‑44 (MQ=38)
cAGGCCGCCGCCAGAGACAACCCCGCTGTCGCCAAAGAAATAATTGCGATGGATTTTGATACGGGagaag > 1:3262507/1‑70 (MQ=255)
ggCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGATGTAtttt < 1:1896111/55‑1 (MQ=255)
ggCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGATGGAtttt < 1:140705/55‑1 (MQ=255)
ggCCGCCGCCAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGATGGAtttt < 1:139180/55‑1 (MQ=255)
gccgccgccAGAGCCAACCCGGCTGTCGCCAAAGa < 1:4150347/35‑1 (MQ=38)
gccgccgccAGAGCCAACCCCGCTGTCGCCAAAGa < 1:2427440/35‑1 (MQ=255)
gccgccgccAGAGCCAACCCCGCTGTCGCCAAAGa < 1:298089/35‑1 (MQ=255)
gccgccgccAGAGCCAACCCCGCTGTCGCCAAAGa < 1:818148/35‑1 (MQ=255)
gccgccgccAGAGCCAACCCCGCTGTCGCCAAAGa < 1:4096095/35‑1 (MQ=255)
gccgccgccAGAGCCAACCCCGCTGTCGCCAAAGa < 1:1537087/35‑1 (MQ=255)
ccgccgccAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGATGGATTTTGATACGGGAGAAGAATGt < 1:1926946/71‑1 (MQ=255)
ccgccgccAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGATGGATTTTGAAACGGGAGAAGAATGt < 1:3935708/71‑1 (MQ=255)
cgccgccAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGATGGa > 1:2885913/1‑48 (MQ=255)
cgccgccAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGATGGa > 1:4066864/1‑48 (MQ=255)
cgccgccAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGATGGa > 1:4369587/1‑48 (MQ=255)
cgccgccAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGATGGa > 1:1378278/1‑48 (MQ=255)
cgccgccAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGATGGa > 1:3674396/1‑48 (MQ=255)
cgccgccAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGATGGa > 1:1639004/1‑48 (MQ=255)
cgccgccAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGATGGa > 1:3024300/1‑48 (MQ=255)
cgccgccAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGATGGa > 1:2974242/1‑48 (MQ=255)
cgccgccAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGATGGa > 1:2915982/1‑48 (MQ=255)
cgccgccAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGATGGATTTTGATACGGGAGAAGAATGt < 1:2566094/70‑1 (MQ=255)
cgccgccAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGATGGATTTTGATACGGGAGAAGAATGTc < 1:4006373/71‑1 (MQ=255)
ccAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGATGGATTTTGATACGGGAGAAGAATGTCCCTAc < 1:4026343/71‑1 (MQ=255)
ccAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGATGGATTTTGATACGGGAGAAGAATGTCCCTAc < 1:371686/71‑1 (MQ=255)
ccAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGATGGATTTTGATACGGGAGAAGAATGTCCCTAc < 1:187876/71‑1 (MQ=255)
ccAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGATGGATTTTGATACGGGAGAAGAATGTCCCTAc < 1:2480875/71‑1 (MQ=255)
ccAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGATGGATTTTGATACGGGAGAAGAATGTCCCTAc < 1:839280/71‑1 (MQ=255)
ccAGAGCCAACCCCGCTGTCGCCAAAGAAATAATTGCGATGGATTTTGATACGGGAGAAGAATGTCCCTAc < 1:4309980/71‑1 (MQ=255)
aaCCCCGCTGTCGCCAAAGAAATAATTGCGATGGAGTTTGATACGGGagaag < 1:4051199/52‑1 (MQ=255)
ccGCTGTCGCCAAAGAAATAATTGCGATGGATTTTGATACGGGAGAAGAATGt > 1:1188853/1‑53 (MQ=255)
ccGCTGTCGCCAAAGAAATAATTGCGATGGATTTTGATACGGGAGAAGAATGTc > 1:99869/1‑54 (MQ=255)
ccGCTGTCGCCAAAGAAATAATTGCGATGGATTTTGATACGGGAGAAGAATGTc > 1:758002/1‑54 (MQ=255)
ccGCTGTCGCCAAAGAAATAATTGCGATGGATTTTGATACGGGAGAAGAATGTc > 1:4213005/1‑54 (MQ=255)
ccGCTGTCGCCAAAGAAATAATTGCGATGGATTTTGATACGGGAGAAGAATGTc > 1:3746442/1‑54 (MQ=255)
ccGCTGTCGCCAAAGAAATAATTGCGATGGATTTTGATACGGGAGAAGAATGTc > 1:3183768/1‑54 (MQ=255)
ccGCTGTCGCCAAAGAAATAATTGCGATGGATTTTGATACGGGAGAAGAATGTc > 1:3095716/1‑54 (MQ=255)
ccGCTGTCGCCAAAGAAATAATTGCGATGGATTTTGATACGGGAGAAGAATGTc > 1:1654642/1‑54 (MQ=255)
ccGCTGTCGCCAAAGAAATAATTGCGATGGATTTTGATACGGGAGAAGAATGTc > 1:1077877/1‑54 (MQ=255)
|
ACGGCAGGTGTCCGCGGTATAGTTGAGATCGCCATACAGGCCGCCGCCAGAGCCAACCCCGTTGTCGCCAAAGAAATAATTGCGATGGATTTTGATACGGGAGAAGAATGTCCCTAC > minE/1081797‑1081913
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
