Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I1 R1
|
122 |
92.7 |
4382561 |
94.3% |
4132755 |
66.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
1,302,228 |
C→T |
V285M (GTG→ATG) |
dacD ← |
D‑alanyl‑D‑alanine carboxypeptidase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,302,228 | 0 | C | T | 100.0%
| 250.3
/ NA
| 74 | V285M (GTG→ATG) | dacD | D‑alanyl‑D‑alanine carboxypeptidase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (39/35); total (39/35) |
TTCTTTATCGCCATACCAGATGCGTTCCGTTCCGACCTTTTTCCCACGGTGCAAAATTTGCACCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTGCCTCTTCCTCACGACCTTTTGCA > minE/1302166‑1302292
|
ttCTTTATCGCCATACCAGATGCGTTCCGTTCCGACCTTTTTCCCACGGTGCAAAATTTGCATCgtagta > 1:2352360/1‑70 (MQ=255)
ttCTTTATCGCCATACCAGATGCGTTCCGTTCCGACCTTTTTCCCACGGTGCAAAATTTGCATCgtagta > 1:768978/1‑70 (MQ=255)
ttCTTTATCGCCATACCAGATGCGTTCCGTTCCGACCTTTTTCCCACGGTGCAAAATTTGCATCgtagta > 1:4092963/1‑70 (MQ=255)
ttCTTTATCGCCATACCAGATGCGTTCCGTTCCGACCTTTTT‑‑CACGGTGCAAAATTTGCATCGTAGTAAAg > 1:2336810/1‑71 (MQ=255)
gCCATACCAGATGCGTTCCGTTCCGACCTTTTTCCCACGGTGCAAAATTTGCATCGTAGTAAAGTTttgtt < 1:868062/71‑1 (MQ=255)
gCCATACCAGATGCGTTCCGTTCCGACCTTTTTCCCACGGTGCAAAATTTGCATCGTAGTAAAGTTttgt < 1:3518025/70‑1 (MQ=255)
ccATACCAGATGCGTTCCGTTCCGACCTTTTTCCCACGGTGCAAAATTTGCATCGTAGTAAAGTTttgttg < 1:1297898/71‑1 (MQ=255)
ccATACCAGATGCGTTCCGTTCCGACCTTTTTCCCACGGTGCAAAATTTGCATCGTAGTAAAGTTttgttg < 1:1643587/71‑1 (MQ=255)
ccATACCAGATGCGTTCCGTTCCGACCTTTTTCCCACGGTGCAAAATTTGCATCGTAGTAAAGTTttgttg < 1:3128017/71‑1 (MQ=255)
cATACCAGATGCGTTCCGTTCCGACCTTTTTCCCACGGTGCAAAATTTGCATCGTAGTAAAGTTttgttg < 1:933698/70‑1 (MQ=255)
ccAGATGCGTTCCGTTCCGACCTTTTTCCCACGGTGCAAAATTTGCATCGTAGTAAAGTTTTGTTGcccc > 1:3740071/1‑70 (MQ=255)
ccAGATGCGTTCCGTTCCGACCTTTTTCCCACGGTGCAAAATTTGCATCGTAGTAAAGTTTTGTTGcccc > 1:2284506/1‑70 (MQ=255)
ccAGATGCGTTCCGTTCCGACCTTTTTCCCACGGTGCAAAATTTGCATCGTAGTAAAGTTTTGTTGcccc > 1:2685417/1‑70 (MQ=255)
ccAGATGCGTTCCGTTCCGACCTTTTTCCCACGGTGCAAAATTTGCATCGTAGTAAAGTTTTGTTGcccc > 1:3134004/1‑70 (MQ=255)
ccAGATGCGTTCCGTTCCGACCTTTTTCCCACGGTGCAAAATTTGCATCGTAGTAAAGTTTTGTTGcccc > 1:215349/1‑70 (MQ=255)
ccAGATGCGTTCCGTTCCGACCTTTTTCCCACGGTGCAAAATTTGCATCGTAGTAAAGTTTTGTTGcccc > 1:3411601/1‑70 (MQ=255)
ccAGATGCGTTCCGTTCCGACCTTTTTCCCACGGTGCAAAATTTGCATCGTAGTAAAGTTTTGTTGcccc > 1:551968/1‑70 (MQ=255)
ccAGATGCGTTCCGTTCCGACCTTTTTCCCACGGTGCAAAATTTGCATCGTAGTAAAGTTTTGTTGcccc > 1:598662/1‑70 (MQ=255)
ccAGATGCGTTCCGTTCCGACCTTTTTCCCACGGTGCAAAATTTGCATCGTAGTAAAGTTTTGTTGcccc > 1:849890/1‑70 (MQ=255)
aGATGCGTTCCGTTCCGACCTTTTTCCCACGGTGCAAAATTTGCATCGTAGTAAAGTTTTGTTGCCCCCaa < 1:3706624/71‑1 (MQ=255)
aGATGCGTTCCGTTCCGACCTTTTTCCCACGGTGCAAAATTTGCATCGTAGTAAAGTTTTGTTGCCCCCaa < 1:1094811/71‑1 (MQ=255)
aGATGCGTTCCGTTCCGACCTTTTTCCCACGGTGCAAAATTTGCATCGTAGTAAAGTTTTGTTGCCCCCaa < 1:789776/71‑1 (MQ=255)
aGATGCGTTCCGTTCCGACCTTTTTCCCACGGTGCAAAATTTGCATCGTAGTAAAGTTTTGTTGCCCCCaa < 1:252410/71‑1 (MQ=255)
aGATGCGTTCCGTTCCGACCTTTTTCCCACGGTGCAAAATTTGCATCGTAGTAAAGTTTTGTTGCCCCCaa < 1:210227/71‑1 (MQ=255)
aGATGCGTTCCGTTCCGACCTTTTTCCCACGGTGCAAAATTTGCATCGTAGTAAAGTTTTGTTGCCCCCaa < 1:121346/71‑1 (MQ=255)
gACCTTTTTCCCACGGTGCAAAATTTGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTg < 1:3558862/71‑1 (MQ=255)
gACCTTTTTCCCACGGTGCAAAATTTGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTg < 1:1698922/71‑1 (MQ=255)
gACCTTTTTCCCACGGTGCAAAATTTGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTg < 1:761728/71‑1 (MQ=255)
gACCTTTTTCCCACGGTGCAAAATTTGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTg < 1:3797233/71‑1 (MQ=255)
gACCTTTTTCCCACGGTGCAAAATTTGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTg < 1:3742027/71‑1 (MQ=255)
gACCTTTTTCCCACGGTGCAAAATTTGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTg < 1:3467580/71‑1 (MQ=255)
gACCTTTTTCCCACGGTGCAAAATTTGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTg < 1:2473175/71‑1 (MQ=255)
aCCTTTTTCCCACGGTGCAAAATTTGCATCGTAGTAAAGTTTTGTTGCCCCCaa > 1:3092750/1‑54 (MQ=255)
aCCTTTTTCCCACGGTGCAAAATTTGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTGc > 1:2503966/1‑71 (MQ=255)
aCCTTTTTCCCACGGTGCAAAATTTGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTGc > 1:3693980/1‑71 (MQ=255)
aCCTTTTTCCCACGGTGCAAAATTTGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTGc > 1:36662/1‑71 (MQ=255)
aCCTTTTTCCCACGGTGCAAAATTTGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTGc > 1:765389/1‑71 (MQ=255)
aCCTTTTTCCCACGGTGCAAAATTTGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTGc > 1:1904012/1‑71 (MQ=255)
aCCTTTTTCCCACGGTGCAAAATTTGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTGc > 1:2256639/1‑71 (MQ=255)
aCCTTTTTCCCACGGTGCAAAATTTGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTGc > 1:2223748/1‑71 (MQ=255)
aCCTTTTTCCCACGGTGCAAAATTTGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTGc > 1:174177/1‑71 (MQ=255)
tttCCCACGGTGCAAAATTTGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTGCctc < 1:1198661/69‑1 (MQ=255)
ggTGCAAAATTTGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTGCCTCTTCCTCACGa < 1:3975370/71‑1 (MQ=255)
cAAAATTTGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTGCCTCTTCCTCACGACCt < 1:3916635/70‑1 (MQ=255)
cAAAATTTGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTGCCTCTTCCTCACGACCt < 1:749553/70‑1 (MQ=255)
cAAAATTTGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTGCCTCTTCCTCACGACCt < 1:3797726/70‑1 (MQ=255)
cAAAATTTGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTGCCTCTTCCTCACGACCt < 1:666961/70‑1 (MQ=255)
cAAAATTTGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTGCCTCTTCCTCACGACCt < 1:680681/70‑1 (MQ=255)
cAAAATTTGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTGCCTCTTCCTCACGACCt < 1:1215058/70‑1 (MQ=255)
cAAAATTTGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTGCCTCTTCCTCACGACCt < 1:1556902/70‑1 (MQ=255)
cAAAATTTGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTGCCTCTTCCTCACGACCt < 1:2578004/70‑1 (MQ=255)
cAAAATTTGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTGCCTCTTCCTCACGACCt < 1:3144028/70‑1 (MQ=255)
cAAAATTTGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTGCCTCTTCCTCACGACCt < 1:3127379/70‑1 (MQ=255)
aaaaTTTGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTGCCTCTTCCTCACGACCttt < 1:1504957/71‑1 (MQ=255)
aaaaTTTGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTGCCTCTTCCTCACGACCttt < 1:4295269/71‑1 (MQ=255)
aaaTTTGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTGCCTCTTCCTCACGACCtttt > 1:2227465/1‑71 (MQ=255)
aaaTTTGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTGCCTCTTCCTCACGACCttt > 1:2715590/1‑70 (MQ=255)
aTTTGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTGCCTCTTCCTCACGACCTTTTGc < 1:3760156/71‑1 (MQ=255)
aTTTGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTGCCTCTTCCTCACGACCTTTTGc < 1:2912365/71‑1 (MQ=255)
tttGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTGCCTCTTCCTCACGa > 1:3449116/1‑62 (MQ=255)
tttGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTGCCTCTTCCTCACGACCTTTTGc > 1:3598438/1‑70 (MQ=255)
tttGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTGCCTCTTCCTCACGACCTTTTGCa > 1:1756773/1‑71 (MQ=255)
tttGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTGCCTCTTCCTCACGACCTTTTGCa > 1:908575/1‑71 (MQ=255)
tttGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTGCCTCTTCCTCACGACCTTTTGCa > 1:1072322/1‑71 (MQ=255)
tttGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTGCCTCTTCCTCACGACCTTTTGCa > 1:665098/1‑71 (MQ=255)
tttGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTGCCTCTTCCTCACGACCTTTTGCa > 1:3956572/1‑71 (MQ=255)
tttGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTGCCTCTTCCTCACGACCTTTTGCa > 1:3903094/1‑71 (MQ=255)
tttGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTGCCTCTTCCTCACGACCTTTTGCa > 1:3803525/1‑71 (MQ=255)
tttGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTGCCTCTTCCTCACGACCTTTTGCa > 1:189856/1‑71 (MQ=255)
tttGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTGCCTCTTCCTCACGACCTTTTGCa > 1:3704531/1‑71 (MQ=255)
tttGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTGCCTCTTCCTCACGACCTTTTGCa > 1:2719167/1‑71 (MQ=255)
tttGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTGCCTCTTCCTCACGACCTTTTGCa > 1:2543040/1‑71 (MQ=255)
tttGCATCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTGCCTCTTCCTCACGACCTTTTGCa > 1:2513238/1‑71 (MQ=255)
tttGCATCGTAGTAAAGTTTTGTTGCCCACAACGCAGTAATTTTCTTGCCTCTTCCTCACGACCTTTTGc > 1:2571221/1‑70 (MQ=255)
|
TTCTTTATCGCCATACCAGATGCGTTCCGTTCCGACCTTTTTCCCACGGTGCAAAATTTGCACCGTAGTAAAGTTTTGTTGCCCCCAACGCAGTAATTTTCTTGCCTCTTCCTCACGACCTTTTGCA > minE/1302166‑1302292
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
