Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I1 R1
|
122 |
92.7 |
4382561 |
94.3% |
4132755 |
66.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
2,187,308 |
T→C |
P183P (CCA→CCG) |
nanT ← |
sialic acid transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,187,308 | 0 | T | C | 100.0%
| 152.9
/ NA
| 42 | P183P (CCA→CCG) | nanT | sialic acid transporter |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (28/14); total (28/14) |
CGTGTTTCTCTTTCCAGTCTTCCGCTTCCGGGATGTTTTTACGCAGCCAGAGAGCAAAGATGATTGGCAAAATGCCGATAAAGAACAGCGCACGCCAGCCCCAGACCGGAACCACCAGGCTA > minE/2187244‑2187365
|
cGTGTTTCTCTTTCCAGTCTTCCGCTTCCGGGATGTTTTTACGCAGCCAGAGAGCAAAGATGATCGGCaa < 1:1121165/70‑1 (MQ=255)
cGTGTTTCTCTTTCCAGTCTTCCGCTTCCGGGATGTTTTTACGCAGCCAGAGAGCAAAGATGATCGGCaa < 1:913365/70‑1 (MQ=255)
cGTGTTTCTCTTTCCAGTCTTCCGCTTCCGGGATGTTTTTACGCAGCCAGAGAGCAAAGATGATCGGCaa < 1:387020/70‑1 (MQ=255)
cGTGTTTCTCTTTCCAGTCTTCCGCTTCCGGGATGTTTTTACGCAGCCAGAGAGCAAAGATGATCGGCaa < 1:3137323/70‑1 (MQ=255)
cGTGTTTCTCTTTCCAGTCTTCCGCTTCCGGGATGTTTTTACGCAGCCAGAGAGCAAAGATGATCGGCaa < 1:2759597/70‑1 (MQ=255)
cGTGTTTCTCTTTCCAGTCTTCCGCTTCCGGGATGTTTTTACGCAGCCAGAGAGCAAAGATGATCGGCaa < 1:1910830/70‑1 (MQ=255)
cGTGTTTCTCTTTCCAGTCTTCCGCTTCCGGGATGTTTTTACGCAGCCAGAGAGCAAAGATGATCGGCaa < 1:1869001/70‑1 (MQ=255)
cGTGTTTCTCTTTCCAGTCTTCCGCTTCCGGGATGTTTTTACGCAGCCAGAGAGCAAAGATGATCGGCaa < 1:110992/70‑1 (MQ=255)
cGTGTTTCTCTTTCCAGTCTTCCGCTTCCGGGATGTTTTTACGCAGCCAGAGAGCAAAGATGATCGGCaa < 1:1297775/70‑1 (MQ=255)
cGTGTCTCTCTTTCCAGTCTTCCGCTTCCGGGATGTTTTTACGCAGCCAGAGAGCAAAGATGATCGGCaa < 1:23308/70‑1 (MQ=255)
tttCTCTTTCCAGTCTTCCGCTTCCGGGATGTTTTTACGCAGCCAGAGAGCAAAGATGATCGGCaa < 1:293209/66‑1 (MQ=255)
tttCTCTTTCCAGTCTTCCGCTTCCGGGATGTTTTTACGCAGCCAGAGAGCAAAGATGATCGGCaa < 1:2875907/66‑1 (MQ=255)
tttCTCTTTCCAGTCTTCCGCTTCCGGGATGTTTTTACGCAGCCAGAGAGCAAAGATGATCGGCaa < 1:1572751/66‑1 (MQ=255)
ttCTCTTTCCAGTCTTCCGCTTCCGGGATGTTTTTACGCAGCCAGAGAGCAAAGATGATCGGCaa < 1:1824902/65‑1 (MQ=255)
tctcTTTCCAGTCTTCCGCTTCCGGGATGTTTTTACGCAGCCAGAGAGCAAAGATGATCGGCAAAATGcc > 1:333965/1‑70 (MQ=255)
tctcTTTCCAGTCTTCCGCTTCCGGGATGTTTTTACGCAGCCAGAGAGCAAAGATGATCGGCAAAATGcc > 1:2559111/1‑70 (MQ=255)
tctcTTTCCAGTCTTCCGCTTCCGGGATGTTTTTACGCAGCCAGAGAGCAAAGATGATCGGCAAAATGcc > 1:1771545/1‑70 (MQ=255)
tctcTTTCCAGTCTTCCGCTTCCGGGATGTTTTTACGCAGCCAGAGAGCAAAGATGATCGGCAAAATGcc > 1:2890839/1‑70 (MQ=255)
tctcTTTCCAGTCTTCCGCTTCCGGGATGTTTTTACGCAGCCAGAGAGCAAAGATGATCGGCAAAATGcc > 1:3924011/1‑70 (MQ=255)
tctcTTTCCAGTCTTCCGCTTCCGGGATGTTTTTACGCAGCCAGAGAGCAAAGATGATCGGCAAAATGcc > 1:2835522/1‑70 (MQ=255)
tCTTCCGCTTCCGGGATGTTTTTACGCAGCCAGAGAGCAAAGATGATCGGCAAAATGCCGATAAAGAACAg > 1:3942109/1‑71 (MQ=255)
tCTTCCGCTTCCGGGATGTTTTTACGCAGCCAGAGAGCAAAGATGATCGGCAAAATGCCGATAAAGAACAg > 1:4342584/1‑71 (MQ=255)
tCTTCCGCTTCCGGGATGTTTTTACGCAGCCAGAGAGCAAAGATGATCGGCAAAATGCCGATAAAGAACAg > 1:178093/1‑71 (MQ=255)
ccgcttccgGGATGTTTTTACGCAGCCAGAGAGCAAAGATGATCGGCAAAATGCCGATAAAGAACAgcgc > 1:4234240/1‑70 (MQ=255)
ccgcttccgGGATGTTTTTACGCAGCCAGAGAGCAAAGATGATCGGCAAAATGCCGATAAAGAACAGCGCa > 1:3223063/1‑71 (MQ=255)
ccgcttccgGGATGTTTTTACGCAGCCAGAGAGCAAAGATGATCGGCAAAATGCCGATAAAGAACAGCGCa > 1:4102427/1‑71 (MQ=255)
ccgcttccgGGATGTTTTTACGCAGCCAGAGAGCAAAGATGATCGGCAAAATGCCGATAAAGAACAGCGCa > 1:4279520/1‑71 (MQ=255)
ccgcttccgGGATGTTTTTACGCAGCCAGAGAGCAAAGATGATCGGCAAAATGCCGATAAAGAACAGCGCa > 1:3635271/1‑71 (MQ=255)
ccgcttccgGGATGTTTTTACGCAGCCAGAGAGCAAAGATGATCGGCAAAATGCCGATAAAGAACAGCGCa > 1:785648/1‑71 (MQ=255)
ccgcttccgGGATGTTTTTACGCAGCCAGAGAGCAAAGATGATCGGCAAAATGCCGATAAAGAACAGCGCa > 1:1600839/1‑71 (MQ=255)
ccgcttccgGGATGTTTTTACGCAGCCAGAGAGCAAAGATGATCGGCAAAATGCCGATAAAGAACAGCGCa > 1:2736295/1‑71 (MQ=255)
ccgcttccgGGATGTTTTTACGCAGCCAGAGAGCAAAGATGATCGGCAAAATGCCGATAAAGAACAGCGCa > 1:1899641/1‑71 (MQ=255)
ggATGTTTTTACGCAGCCAGAGAGCAAAGATGATCGGCAAAATGCCGATAAAGAACAGCGCACGCCAGccc > 1:406225/1‑71 (MQ=255)
tGTTTTTACGCAGCCAGAGAGCAAAGATGATCGGCAAAATGCCg > 1:2791664/1‑44 (MQ=255)
tGTTTTTACGCAGCCAGAGAGCAAAGATGATCGGCAAAATGCCGATAAAGAACAGCGCACGCCAGccc > 1:454340/1‑68 (MQ=255)
tGTTTTTACGCAGCCAGAGAGCAAAGATGATCGGCAAAATGCCGATAAAGAACAGCGCACGCCAGccc > 1:2231566/1‑68 (MQ=255)
tttACGCAGCCAGAGAGCAAAGATGATCGGCAAAATGCCGATAAAGAACAGCGCACGCCAGCCCCAGACCg > 1:3529444/1‑71 (MQ=255)
tttACGCAGCCAGAGAGCAAAGATGATCGGCAAAATGCCGATAAAGAACAGCGCACGCCAGCCCCAGACCg > 1:1283046/1‑71 (MQ=255)
tttACGCAGCCAGAGAGCAAAGATGATCGGCAAAATGCCGATAAAGAACAGCGCACGCCAGCCCCAGACCg > 1:1315597/1‑71 (MQ=255)
tttACGCAGCCAGAGAGCAAAGATGATCGGCAAAATGCCGATAAAGAACAGCGCACGCCAGCCCCAGACCg > 1:2598348/1‑71 (MQ=255)
agCAAAGATGATCGGCAAAATGCCGATAAAGAACAGCGCACGCCAGCCCCAGACCGGAACCACCAGGCta > 1:2586855/1‑70 (MQ=255)
agCAAAGATGATCGACAAAATGCCGATAAAGAACAGCGCACGCCAGCCCCAGACCGGAACCACCAGGCta > 1:3052113/1‑70 (MQ=255)
|
CGTGTTTCTCTTTCCAGTCTTCCGCTTCCGGGATGTTTTTACGCAGCCAGAGAGCAAAGATGATTGGCAAAATGCCGATAAAGAACAGCGCACGCCAGCCCCAGACCGGAACCACCAGGCTA > minE/2187244‑2187365
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
