Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A14 F129 I1 R1
|
16 |
78.2 |
4038333 |
91.8% |
3707189 |
99.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
NC_000913 |
4,628,231 |
Δ14 bp |
coding (917‑930/1233 nt) |
nadR → |
trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 4628230 | 3 (0.040) | 80 (1.020) |
56/198 |
0.3 |
97.6% |
coding (916/1233 nt) |
nadR |
trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor |
| ? | NC_000913 |
4628245 = |
1 (0.010) | coding (931/1233 nt) |
nadR |
trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor |
GCGGTGATGAGATCGCATTGCAGTATTCTGACTACGATAAAATCGCGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4628132‑4628230
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCCGTTCGTGCAGGCGCTGATTGATGAATACCGTTTCGATCTGGTGATC > NC_000913/4628245‑4628343
GCGGTGATGAGATCGCATTGCAGTATTCTGACTACGATAAAATCGCGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGG > 1:715835/1‑100
GGTGATGAGATCGCATTGCAGTATTCTGACTACGATAAAATCGCGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGAT < 2:1478480/100‑1
GATGAGATCGCATTGCAGTATTCTGACTACGATAAAATCGCGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTT > 1:1660141/1‑100
ATGAGATCGCATTGCAGTATTCTGACTACGATAAAATCGCGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTG < 2:155225/100‑1
TGAGATCGCATTGCAGTATTCTGACTACGATAAAATCGCGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGT > 2:1676512/1‑100
AGATCGCATTGCAGTATTCTGACTACGATAAAATCGCGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCA < 2:279067/100‑1
AGATCGCATTGCAGTATTCTGACTACGATAAAATCGCGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCA < 2:1933321/100‑1
AGATCGCATTGCAGTATTCTGACTACGATAAAATCGCGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCA < 1:1998300/100‑1
AGATCGCATTGCAGTATTCTGACTACGATAAAATCGCGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCA > 1:1608675/1‑100
ATCGCATTGCAGTATTCTGACTACGATAAAATCGCGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACC < 1:1558541/100‑1
TCGCATTGCAGTATTCTGACTACGATAAAATCGCGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCA < 1:242457/100‑1
CATTGCAGTATTCTGACTACGATAAAATCGCGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTC > 2:677281/1‑100
ATTGCAGTATTCTGACTACGATAAAATCGCGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCA < 2:1726888/100‑1
TTGCAGTATTCTGACTACGATAAAATCGCGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAG < 1:1006670/100‑1
TGCAGTATTCTGACTACGATAAAATCGCGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGG < 2:832869/100‑1
GCAGTATTCTGACTACGATAAAATCGCGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGC > 1:1450734/1‑100
CAGTATTCTGACTACGATAAAATCGCGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCG < 1:536845/100‑1
CAGTATTCTGACTACGATAAAATCGCGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCG > 1:271303/1‑100
CAGTATTCTGACTACGATAAAATCGCGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCG < 2:1886923/100‑1
CAGTATTCTGACTACGATAAAATCGCGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCG > 1:668599/1‑100
CAGTATTCTGACTACGATAAAATCGCGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCG > 1:122903/1‑100
ATTCTGACTACGATAAAATCGCGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCT > 2:1286127/1‑100
ATTCTGACTACGATAAAATCGCGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCT > 1:162175/1‑100
TCTGACTACGATAAAATCGCGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCTGC < 2:1498052/100‑1
TCTGACTACGATAAAATCGCGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCTGC < 2:1450725/100‑1
CTGACTACGATAAAATCGCGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGTTTTTGTCACCACTCAGTCGTTCTGC > 1:658413/1‑99
CTACGATAAAATCGCGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAA < 1:1558191/100‑1
TACGATAAAATCGCGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAG < 2:1665422/100‑1
TACGATAAAATCGCGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAG < 2:1647651/100‑1
ACGATAAAATCGCGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGT > 1:1231679/1‑100
ACGATAAAATCGCGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGT > 1:402165/1‑100
CGATAAAATCGCGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTA > 2:718099/1‑100
CGATAAAATCGCGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTA < 2:5883/100‑1
GATAAAATCGCGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTAC > 2:1385027/1‑100
ATAAAATCGCGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACG < 1:1836151/100‑1
AAATCGCGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAG > 2:1132378/1‑100
AATCGCGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGG > 2:1555927/1‑100
GCGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGG < 1:1576814/100‑1
CGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGG < 2:715834/100‑1
TGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAAC < 1:1197736/100‑1
GCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATC > 2:1025559/1‑100
GCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATC > 2:327583/1‑100
CCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCC > 1:1814575/1‑100
CACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCCG < 2:1759359/100‑1
CGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCCGTT > 1:1006438/1‑100
CGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCCGTT < 2:1608663/100‑1
CTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCCGTTCG < 1:1555938/100‑1
TCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCCGTTCGT > 2:529308/1‑100
AATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCCGTTCGTGC < 1:849501/100‑1
ATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCCGTTCGTGCA > 1:1607445/1‑100
ATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCCGTTCGTGCA > 2:1982018/1‑100
ATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCCGTTCGTGCA > 2:1900965/1‑100
ATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCCGTTCGTGCAGGCG > 1:1900395/1‑100
ATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCCGTTCGTGCAGGCG > 1:1170515/1‑100
ATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCCGTTCGTGCAGGCG > 1:101549/1‑100
ATTGATTTTGCGGTGAAATATGCCAATAAAGTGGGATGTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCCGTTCGTGCAGGCG > 2:1084839/1‑100
ttATTTTGCGGTGAAATATGCCCATAAAGCGGGATTTTGGCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATGCGTTCGTGCAGGCGCT < 2:1618614/98‑1
ATTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCCGTTCGTGCAGGatcacc > 2:1138282/1‑94
TTTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCCGTTCGTGCAGGCGCTGAT < 1:529307/100‑1
TTTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCCGTTCGTGCAGGCGCTGATT < 1:1286133/100‑1
TTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCCGTTCGTGCAGGCGCTGATTG < 1:1676524/100‑1
TTGCGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCCGTTCGTGCAGGCGCTGATTG < 2:101550/100‑1
CGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCCGTTCGTGCAGGCGCTGATTGATG < 1:717723/100‑1
CGGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCCGTTCGTGCAGGCGCTGATTGATG < 2:1814563/100‑1
GGTGAAATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCCGTTCGTGCAGGCGCTGATTGATGA > 2:326118/1‑100
ATATGCCAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCCGTTCGTGCAGGCGCTGATTGATGAATACCG < 1:327582/100‑1
TGCCAATAAAGTGGGTTTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCCGTTCGTGCAGGCGCTGATTGATGAATACCGTTT < 1:1982030/100‑1
TGCCAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCCGTTCGTGCAGGCGCTGATTGATGAATACCGTTT < 2:402166/100‑1
CCAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCCGTTCGTGCAGGCGCTGATTGATGAATACCGTTTCG > 2:745173/1‑100
CAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCCGTTCGTGCAGGCGCTGATTGATGAATACCGTTTCGA > 1:733521/1‑100
CAATAAAGTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCCGTTCGTGCAGGCGCTGATTGATGAATACCGTTTCGA > 1:1437120/1‑100
TAAAGTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCCGTTCGTGCAGGCGCTGATTGATGAATACCGTTTCGATCT < 2:1969475/100‑1
AAGTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCCGTTCGTGCAGGCGCTGATTGATGAATACCGTTTCGATCTGG < 2:270860/100‑1
AAGTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCCGTTCGTGCAGGCGCTGATTGATGAATACCGTTTCGATCTGG < 2:547407/100‑1
GTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCCGTTCGTGCAGGCGCTGATTGATGAATACCGTTTCGATCTGGTG > 2:1329294/1‑100
GTGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCCGTTCGTGCAGGCGCTGATTGATGAATACCGTTTCGATCTGGTG > 2:1204520/1‑100
TGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCCGTTCGTGCAGGCGCTGATTGATGAATACCGTTTCGATCTGGTGA < 1:677281/100‑1
TGGGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCCGTTCGTGCAGGCGCTGATTGATGAATACCGCTTCGATCTGGTGA < 1:1353079/100‑1
GGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCCGTTCGTGCAGGCGCTGATTGATGAATACCGTTTCGATCTGGTGATC > 1:559064/1‑100
GGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCCGTTCGTGCAGGCGCTGATTGATGAATACCGTTTCGATCCGGTGATC > 2:657422/1‑100
GCGGTGATGAGATCGCATTGCAGTATTCTGACTACGATAAAATCGCGCTGGGCCACGCTCAATACATTGATTTTGCGGTGAAATATGCCAATAAAGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4628132‑4628230
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAACATCCGTTCGTGCAGGCGCTGATTGATGAATACCGTTTCGATCTGGTGATC > NC_000913/4628245‑4628343
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
