Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A15 F55 I0 R1
|
245 |
145.6 |
7293262 |
93.0% |
6782733 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
4,177,172 |
T→A |
22.7% |
intergenic (+44/‑186) |
tufB → / → secE |
translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,177,172 | 0 | T | A | 22.7%
| 302.3
/ 82.6
| 149 | intergenic (+44/‑186) | tufB/secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit |
| Reads supporting (aligned to +/- strand): ref base T (46/69); new base A (15/19); total (61/88) |
| Fisher's exact test for biased strand distribution p-value = 6.95e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 155 total aligned reads displayed.
TCCGTGAAGGCGGCCGTACCGTTGGCGCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCTCATCAGTGATTTTCTTTGTCATAATCATTGCTGAGACAGGCTCTGTTGAGGGCGTATA > NC_000913/4177073‑4177269
|
tCCGTGAAGGCGGCCGTACCGTTGGCGCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCAtt < 1:3164438/100‑1 (MQ=255)
tCCGTGAAGGCGGCCGTACCGTTGGCGCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCAtt < 2:1346739/100‑1 (MQ=255)
ccGTGAAGGCGGCCGTACCGTTGGCGCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCAttt < 2:3139763/100‑1 (MQ=255)
gTGAAGGCGGCCGTACCGTTGGCGCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGa < 1:109319/100‑1 (MQ=255)
gTGAAGGCGGCCGTACCGTTGGCGCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGa < 2:1599027/100‑1 (MQ=255)
tGAAGGCGGCCGTACCGTTGGCGCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGAt < 2:2567350/100‑1 (MQ=255)
gAAGGCGGCCGTACCGTTGGCGCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATg < 1:1754432/100‑1 (MQ=255)
aaGGCGGCCGTACCGTTGGCGCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGc < 1:3405286/100‑1 (MQ=255)
ggcggcCGTACCGTTGGCGCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGccc > 2:3373336/1‑100 (MQ=255)
cggacggagcGTTGGGGCGTGCGTTGTAGCAAAAGTTCTTGGCTAATTGCCTATAACATCTGACGGAATGCGCACTTAGAGTGCATCAAATGATGCCCtt < 2:1300967/91‑1 (MQ=255)
gcCGTACCGTTGGCGCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCAAATGATGCCCtttt < 1:2410465/100‑1 (MQ=255)
gcCGTACCGTTGGCGCGGGCGTTGTAGCAAAAGTGCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCAAATGATGCCCtttt < 2:683011/100‑1 (MQ=255)
gcCGTACCGTTGGCGCGGGCGTTCTAGCAAAAGTTCTTAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCAAATGATGCCCtttt < 1:3261279/100‑1 (MQ=38)
ccGTACCGTTGGCGCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCttttt > 1:1985124/1‑100 (MQ=255)
cGTACCGTTGGCGCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCAAATGATGCCCttttag < 1:1457235/100‑3 (MQ=255)
cGTACCGTTGGCGCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCAAATGATGCCCttttag < 1:1457168/100‑3 (MQ=255)
cGTACCGTTGGCGCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCAAATGATGCCCttttag < 2:1370015/100‑3 (MQ=255)
cGTACCGTTGGCGCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCAAATGATGCCCttttag < 2:249899/100‑3 (MQ=255)
gTACCGTTGGCGCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGc < 1:1364284/100‑1 (MQ=255)
gTACCGTTGGCGCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGc > 2:274421/1‑100 (MQ=255)
gTACCGTTGGCGCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGc < 1:1494971/100‑1 (MQ=255)
gTACCGTTGGCGCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCAAATGATGCCCttttagt < 2:3267890/100‑4 (MQ=38)
tACCTTTGGCGCGGGCGTTGTAGCAAAAGTTCTGCGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCAAATGATGCCCttttag < 2:2257761/98‑3 (MQ=38)
tACCGTTGGCGCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCAATAACATTTGACGCAATGCGCACTAAAAGGGCATCAAATGATGCCCttttagtg < 2:50277/100‑5 (MQ=38)
aCCGTTGGCGCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCAc < 1:3566904/100‑1 (MQ=255)
cGTTGGCGCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGc > 1:1140710/1‑100 (MQ=255)
gTTGGCGCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑t < 1:217295/100‑1 (MQ=255)
tGGCGCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑ttt < 2:2028918/100‑1 (MQ=255)
gcgcGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCg > 1:2633563/1‑100 (MQ=255)
gcgcGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCg < 2:3507256/100‑1 (MQ=255)
cgcgGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGt < 1:3162330/100‑1 (MQ=255)
gctgacGTTGTAGCAAAAGTTCTAAGCCAATTGCCCATAACAGTTGACGCAATGCGCACTCAAAGGCCATCATTTGATGCCCTATTTGCACGC‑TTTc < 2:1736462/92‑1 (MQ=255)
gcgGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTa < 1:3444674/100‑1 (MQ=255)
gcgGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTa < 2:1704240/100‑1 (MQ=255)
gccggCGTTGTAGCAAAAGTTCTGCGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTa < 2:149311/97‑1 (MQ=255)
tggCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTAcc < 2:3535187/99‑1 (MQ=255)
gggCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTAcc < 2:718024/100‑1 (MQ=255)
gggCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTAcc < 1:235754/100‑1 (MQ=255)
gCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAg < 1:3410107/100‑1 (MQ=255)
ttGTAGCAAAAGTTCTGGGCTAATTGCCGATAACATTGGACGCAATGCGCACTAAAAGGGCATCATTTCATGCCCTTTTTGCACGC‑TTTCGTAcc < 2:988060/95‑1 (MQ=255)
ttGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAAc < 2:628467/100‑1 (MQ=255)
gTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCt > 2:2795084/1‑100 (MQ=255)
tAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTg > 2:3316928/1‑100 (MQ=255)
gCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGc < 2:3237887/100‑1 (MQ=255)
gCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGc < 1:274423/100‑1 (MQ=255)
cAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGc > 1:2271553/1‑99 (MQ=255)
aaaGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCtca > 2:3557966/1‑100 (MQ=255)
aaGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCtcat < 2:1147024/100‑1 (MQ=255)
aGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGATCCTTGCtcatc < 2:1906441/100‑1 (MQ=255)
aGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCtcatc < 1:1293172/100‑1 (MQ=255)
aGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCtcatc < 2:135469/100‑1 (MQ=255)
ttCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTATTAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCtcatcc < 2:2880085/99‑2 (MQ=255)
ttCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCTCATCAg < 2:2088113/100‑1 (MQ=255)
gCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCTCATCAGTGAttt < 2:469010/100‑1 (MQ=255)
gCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCTCATCAGTGAttt < 1:1403138/100‑1 (MQ=255)
tAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCTCATCAGTGATTTTc > 1:1054732/1‑100 (MQ=255)
tAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCTCACCAGTGATTTTc > 1:2190928/1‑100 (MQ=255)
aTTGCCGATAACATTTGACGCAATTCGCACTAAAAGGGCATCATTTCATGCCCTTTTTTCACTC‑TTTCGTACCAGAACCTGGCTCATCAGTGATTTTCtt < 2:3029749/100‑1 (MQ=255)
gCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCTCATCAGTGATTTTCTTTGt > 1:1469666/1‑100 (MQ=255)
gCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCTCATCAGTGATTTTCTTTGt > 1:3233239/1‑100 (MQ=255)
gCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCTCATCAGTGATTTTCTTTGt > 1:870281/1‑100 (MQ=255)
gCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCTCATCAGTGATTTTCTTTGt > 2:125639/1‑100 (MQ=255)
ccGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCTCATCAGTGATTTTCTTTGTc > 2:1835151/1‑100 (MQ=255)
aTAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCTCATCAGTGATTTTCTTTGTCATa < 2:3368343/100‑1 (MQ=255)
cATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCTCATCAGTGATTTTCTTTGTCATAATc > 1:1283057/1‑99 (MQ=255)
aTTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCTCATCAGTGATTTTCTTTGTCATAATCAt > 1:2088664/1‑100 (MQ=255)
aTTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCTCATCAGTGATTTTCTTTGTCATAATCAt > 1:49260/1‑100 (MQ=255)
tttGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCTCATCAGTGATTTTCTTTTTCACAATCAtt < 2:1909291/100‑1 (MQ=255)
tttGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCTCATCAGTGATTTTCTTTGTCATAATCAtt > 2:2889150/1‑100 (MQ=255)
tggcGCACTGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCTCATCAGTGATTTTCTTTGTCATAATCATTGc < 2:3143154/97‑1 (MQ=255)
tGACGCAATGCGCACTAAAAGGGCATCATTTGATGCTCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCTCATCAGTGATTTTCTTTGTCATAATCATTGc < 2:900078/100‑1 (MQ=255)
aCGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCTCATCAGTGATTTTCTTTGTCATAATCATTGCTg < 1:2949116/100‑1 (MQ=255)
cGCAATGCTCACTAAAAGGGCATCAGTTGATTCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCTCATCAGTGATTTTCTTTGTCATAATCATTGCTg < 1:1668203/99‑1 (MQ=255)
cAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCTCATCAGTGATTTTCTTTGTCATAATCATTGCTgaga < 1:1695687/100‑1 (MQ=255)
cAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCTCATCAGTGATTTTCTTTGTCATAATCATTGCTgaga > 1:2737215/1‑100 (MQ=255)
aaTGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCTCATCATTGATTTTCTTTGTCATAATCATTGCTGAGAc > 2:1850634/1‑100 (MQ=255)
tGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCTCATCAGTGATTTTCTTTGTCATAATCATTGCTGAGACAg > 1:2403284/1‑100 (MQ=255)
tGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCTCATCAGTGATTTTCTTTGTCATAATCATTGCTGAGACAg < 1:125639/100‑1 (MQ=255)
cgcACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCTCATCAGTGATTTTCTTTGTCATAATCATTGCTGAGACAGGc < 1:420590/100‑1 (MQ=255)
cgcACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCTCATCAGTGATTTTCTTTGTCATAATCATTGCTGAGACAGGc < 1:3351238/100‑1 (MQ=255)
cgcACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAAAACCTGGCTCATAAGTGATTTTCTTTGTCATAATCATTGCTGAGACAGGc > 2:833479/1‑100 (MQ=255)
gcACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCTCATCAGTGATTTTCTTTGTCATAATCATTGCTGAGACAGGct > 1:3633108/1‑100 (MQ=255)
tgcaaaaaGGGCATCAAATGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCTCATCAGTGATTTTCTTTGTCATAATCATTGCTGAGACAGGctc > 2:2701143/5‑100 (MQ=38)
cACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCTCATCAGTGATTTTATTTGTCATAATCATTGCTGAGACAGGctc > 2:2187856/1‑100 (MQ=255)
gcaaaaaGGGCATCAAATGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCTCATCAGTGATTTTCTTTGTCATAATCATTGCTGAGACAGGctct > 1:2087626/4‑100 (MQ=39)
cTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCTCATCAGTGATTTTCTTTGTCATAATCATTGCTGAGACAGGCTCTg > 1:2592050/1‑100 (MQ=255)
cTAAAAGGGCATCATATGATGCCCTTTTTGCACGC‑TTTCGTAACAGAACCTGGCTCATCAGTGAGTTTCTTTGTCATAATAATTGCTGAGCCAGGCTCTg > 2:642866/1‑100 (MQ=255)
aaaaaGGGCATCAAATGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCTCATCAGTGATTTTCTTTGTCATAATCATTGCTGAGACAGGCTCTGt > 1:860114/2‑100 (MQ=255)
aaaaGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCTCATCAGTGATTTTCTTTGTCATAATCATTGCTGAGACAGGCTCTGtt > 2:2727029/1‑100 (MQ=255)
aaaaGGGCATCAAATGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCTCATCAGTGATTTTCTTTGTCATAATCATTGCTGAGACAGGCTCTGtt > 1:1590697/1‑100 (MQ=255)
aaGGGCATCAAATGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCTCATCAGTGATTTTCTTTGTCATAATCATTGCTGAGACAGGCTCTGTTGa > 1:205721/1‑100 (MQ=255)
aaGGGCATCAAATGATGCCCTTTTAGTGCGCATTGCGTACCAGAACCTGGCTCATCAGTGATTTTCTTTGTCATAATCATTGCTGAGACAGGCTCTGTTg > 1:1495416/1‑100 (MQ=21)
gggCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCTCATCAGTGATTTTCTTTGTCATAATCATTGCTGAGACAGGCTCTGTTGAgg < 1:2614382/100‑1 (MQ=255)
ggCATCAAATGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCTCATCAGTGATTTTCTTTGTCATAATCATTGCTGAGACAGGCTCTGTTGAggg > 1:2790566/1‑100 (MQ=255)
gCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCTCATCAGTGATTTTCTTTGTCATAATCATTGCTGAGACAGGATCTGTTGAggg > 2:3253623/1‑99 (MQ=255)
catcatTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCTCATCAGTGATTTTCTTTGTCATAATCATTGCTGAGACAGGCTCTGTTGAGGGCg < 1:801868/100‑1 (MQ=255)
catcatTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCTCATCAGTGATTTTCTTTGTCATAATCATTGCTGAGACAGGCTCTGTTGAGGGCg > 1:946234/1‑100 (MQ=255)
catTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCTCATCAGTGATTTTCTTTGTCATAATCATTGCTGAGACAGGCTCTGTTGAGGGCGtat < 2:19980/100‑1 (MQ=255)
atTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCTCATCAGTGATTTTCTTTGTCATAATCATTGCTGAGACAGGCTCTGTTGAGGGCGtata < 1:1931387/100‑1 (MQ=255)
tttGATGCCGTTTTTGCATGC‑TTTCGTACCAGAACCTGGCTCATCAGTGATTTTCTTTGTCATAATCATTGCTGAGACAGGCTCTGTTGAGGGCGtat < 2:1523480/98‑1 (MQ=255)
|
TCCGTGAAGGCGGCCGTACCGTTGGCGCGGGCGTTGTAGCAAAAGTTCTGAGCTAATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTTGCACGC‑TTTCGTACCAGAACCTGGCTCATCAGTGATTTTCTTTGTCATAATCATTGCTGAGACAGGCTCTGTTGAGGGCGTATA > NC_000913/4177073‑4177269
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
