Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A16 F201 I0 R1 306 176.9 8831342 93.4% 8248473 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,595,315 (A)5→4 100% coding (166/1278 nt) livM ← branched‑chain amino acid ABC transporter permease

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,595,3110A.72.2% 313.9 / 221.0 176coding (170/1278 nt)livMbranched‑chain amino acid ABC transporter permease
Reads supporting (aligned to +/- strand):  ref base A (26/23);  new base . (54/73);  total (80/96)
Fisher's exact test for biased strand distribution p-value = 2.39e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.41e-01

Only 100 of 195 total aligned reads displayed.

TTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCGTGTCGACCACCAGTTTGGTGCCATCCAGCTCCAGTTGCACGCC  >  NC_000913/3595212‑3595408
                                                                                                   |                                                                                                 
ttCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGGATAAACTTCGGTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGgaaga                                                                                                   >  1:3019926/1‑100 (MQ=255)
ttCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGgaaga                                                                                                   <  2:2335009/100‑1 (MQ=255)
   tGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGaaaa                                                                                                <  2:2620091/100‑1 (MQ=255)
    gCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGaaaag                                                                                               >  1:232722/1‑99 (MQ=255)
    gCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGaaaag                                                                                               <  2:1473673/100‑2 (MQ=255)
     cTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGaaaaga                                                                                              >  1:3224997/1‑98 (MQ=255)
      ttCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGaaaagac                                                                                             <  2:3961251/100‑4 (MQ=255)
       tCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGaaaagacc                                                                                            >  2:2037321/1‑96 (MQ=255)
       tCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGac                                                                                            >  2:335462/1‑100 (MQ=255)
        cACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGacca                                                                                          >  2:4244420/1‑100 (MQ=255)
          ccGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGaccacc                                                                                        >  1:1497387/1‑100 (MQ=255)
              ggAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCAccgccg                                                                                    <  1:1562253/100‑1 (MQ=255)
               gAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGt                                                                                   >  1:833186/1‑100 (MQ=255)
                aGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTg                                                                                  >  2:1096421/1‑100 (MQ=255)
                aGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTg                                                                                  >  1:470775/1‑100 (MQ=255)
                 gCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTg                                                                                  >  2:255363/1‑100 (MQ=255)
                 gCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGc                                                                                 >  1:3852102/1‑100 (MQ=255)
                 gCCATCAATGGCGGGCAGAATAAACTTCGGTACGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAGAAGCTGGAA‑AAAAAGACCACCGCCGTGc                                                                                 >  2:2137735/1‑100 (MQ=255)
                  ccATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGcc                                                                                <  2:2485172/100‑1 (MQ=255)
                  ccATCAATGGCGGGCAGAATAAACTTCGGACCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAACGCTGGAAG‑AAAAGACCACCGCCGTGcc                                                                                <  2:3080373/100‑1 (MQ=255)
                   cgtCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCg                                                                               <  1:2672656/98‑1 (MQ=255)
                   cATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCg                                                                               >  2:4343490/1‑100 (MQ=255)
                   cATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCg                                                                               >  1:3461547/1‑100 (MQ=255)
                   cATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGACGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCg                                                                               >  2:47859/1‑100 (MQ=255)
                     tCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGAt                                                                             >  2:17169/1‑100 (MQ=255)
                      cAATGGCGGGCAGAATAAACTTCGGTCCGGAAATGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGATa                                                                            <  1:4271221/100‑1 (MQ=255)
                      cAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGAt                                                                             >  1:2047428/1‑100 (MQ=255)
                      cAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGCTTGTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGATa                                                                            <  1:3927005/100‑1 (MQ=255)
                       aaTGGCGGGCAGAATAAACTTCGGTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGATaa                                                                           <  2:3912531/100‑1 (MQ=255)
                            cGGGCAGAATAAACTTCGGTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATAAacac                                                                       >  2:94301/1‑100 (MQ=255)
                             gggCAGAATAAACTTCGGTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATAAACAcc                                                                      <  2:1896079/100‑1 (MQ=255)
                             gggCAGAATAAACTTCGGTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGATAAACAccc                                                                     <  1:688501/100‑1 (MQ=255)
                             gggCAGAATAAACTTCGGTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGATAAACAcc                                                                      <  1:440332/99‑1 (MQ=255)
                             gggCAGAATAAACTTCGGTCCGGAAACGCTTTTCAACCCGTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATAAACAcc                                                                      <  2:2177248/100‑1 (MQ=255)
                                cAGAATAAACTTCGGTCCGGAAACGCTTTTCAACTCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGATAAACACCCACt                                                                  <  2:1445435/100‑1 (MQ=255)
                                    aTAAACTTCGGTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATAAACACCCACTGcc                                                               <  2:2706086/100‑1 (MQ=255)
                                    aTAAACTTCGGTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATAAACACCCACTGcc                                                               >  2:4065299/1‑100 (MQ=255)
                                       aaCTTCGGTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACg                                                           >  1:2269591/1‑100 (MQ=255)
                                        aCTTCGGTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACg                                                           <  1:13711/100‑1 (MQ=255)
                                        aCTTCGGTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACg                                                           >  1:1724558/1‑100 (MQ=255)
                                         cTTCGGTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACgg                                                          <  1:4052505/100‑1 (MQ=255)
                                         cTTCGGTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAA‑ACCACCGCCGTGCCGATAAACACCCACTGCCAACGGa                                                         >  2:1936529/1‑100 (MQ=255)
                                         cTTCGGTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGa                                                         >  2:661657/1‑100 (MQ=255)
                                         cTTCGGTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGa                                                         >  2:1354445/1‑100 (MQ=255)
                                          ttCGGTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGAc                                                        <  2:413955/100‑1 (MQ=255)
                                            cGGTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACAt                                                      >  1:1980960/1‑100 (MQ=255)
                                             ggTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACAt                                                      >  2:939225/1‑100 (MQ=255)
                                             ggTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACAt                                                      >  2:838043/1‑100 (MQ=255)
                                             ggTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATc                                                     >  2:153856/1‑100 (MQ=255)
                                              gTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATcc                                                    <  1:801107/100‑1 (MQ=255)
                                                ccGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGa                                                  <  2:4087187/100‑1 (MQ=255)
                                                 cggaggcGCTTTTCAACTGTTTCTGGAAAGCCGGTCGAAAAAGCTGGAAG‑AAAAGACTACCGCCGTGCCGATAGACAGCAAGGGCCAAGGGAGATGCGaa                                                 >  1:3275854/7‑100 (MQ=255)
                                                       cGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCgtg                                           <  1:773670/100‑1 (MQ=255)
                                                       cGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCgt                                            >  1:372892/1‑99 (MQ=255)
                                                         cTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACCGACATCCGAAGCCgtgt                                          >  1:3638454/1‑100 (MQ=255)
                                                         cTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCGTGTc                                         <  1:1642868/100‑1 (MQ=255)
                                                          ttttCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGAGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCGTGTCg                                        >  1:2826361/1‑100 (MQ=255)
                                                             tCAAGCCTTTTTGGAAAGCCTGTCGCGAAAGCCGGAAGAAAAAGACCACCGCGGTGCCGATAAACACCCACGGCCAACGGAAATCCTAAGCCGTGTCg                                        <  1:980611/98‑1 (MQ=255)
                                                             tCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCGTGTCGacc                                     <  1:3338529/100‑1 (MQ=255)
                                                             tCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCGTGTCGacc                                     >  2:753422/1‑100 (MQ=255)
                                                              cAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCGTGTCGacca                                    <  1:1309860/100‑1 (MQ=255)
                                                               aaCCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCGTGTCGaccac                                   >  2:162921/1‑100 (MQ=255)
                                                               aaCCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCGTGTCGaccac                                   >  1:1778605/1‑100 (MQ=255)
                                                                aCCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCGTGTCGaccacc                                  <  2:1794489/100‑1 (MQ=255)
                                                                 cccTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCGTGTCGaccacc                                  >  1:50064/1‑100 (MQ=255)
                                                                 cccTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCGTGTCGaccacc                                  <  1:1364530/100‑1 (MQ=255)
                                                                 cccTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCGTGTCGAccacca                                 <  2:1827880/100‑1 (MQ=255)
                                                                 cccTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCGTGTCGAccacca                                 <  2:1482199/100‑1 (MQ=255)
                                                                  ccTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCGTGTCGACCACCAg                                <  1:3561214/100‑1 (MQ=255)
                                                                       cTGGAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCGTGTCGACCACCAGTTTgg                           <  2:224285/100‑1 (MQ=255)
                                                                        tGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCTCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCGTGTCGACCACCAGTTTgg                           <  1:3150834/100‑1 (MQ=255)
                                                                        tGGAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCGTGTCGACCACCAGTTTGGt                          <  1:626018/100‑1 (MQ=255)
                                                                        tGGAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCGTGTCGACCACCAGTTTGGt                          >  2:3749207/1‑100 (MQ=255)
                                                                        tGGAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCGTGTCGACCACCAGTTTGGt                          >  2:3784474/1‑100 (MQ=255)
                                                                        tGGAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCAATAAACACCCACTGCCAACGGACATCCGAAGCCGTGTCGACCACCAGTTTGGt                          >  2:2194170/1‑100 (MQ=255)
                                                                         ggAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCGTGTCGACCACCAGTTTGGTg                         >  2:119976/1‑100 (MQ=255)
                                                                          gAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCGTGTCGACCACCAGTTTGGTGc                        <  1:1226511/100‑1 (MQ=255)
                                                                          gAAAGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCGTGTCGACCACCAGTTTGGTGc                        <  2:3670094/100‑1 (MQ=255)
                                                                           aaaGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGTCGATAAACACCCACTGCCAACGGACATCCGAAGCCGTGTCGACCACCAGTTTGGTGcc                       >  1:2407024/1‑100 (MQ=255)
                                                                            aaGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATAACCACCCACTGCCAACGGACATCCGAAGCCGTGTCGACCACCAGTTTGGTGcc                       <  1:453240/100‑1 (MQ=255)
                                                                            aaGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCGTGTCGACCACCAGTTTGGTGCCa                      >  2:1958873/1‑100 (MQ=255)
                                                                            aaGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCGTGTCGACCACCAGTTTGGTGCCa                      <  2:3137395/100‑1 (MQ=255)
                                                                             aGCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCGTGTCGACCACCAGTTTGGTGCCAt                     <  1:1054112/100‑1 (MQ=255)
                                                                              gCCGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGATAAACTCCCACTGCGAACGGACATCCGAAGCCGTGTCGACCACCAGTTTGGTGCCATc                    >  1:2813633/1‑100 (MQ=255)
                                                                               ccGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCGTGTCGACCACCAGTTTGGTGCCATcc                   <  2:3503295/100‑1 (MQ=255)
                                                                                cGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCGTGTCGACCACCAGTTTGGTGCCATcc                   <  2:258250/100‑1 (MQ=255)
                                                                                cGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCGTGTCGACCACCAGTTTGGTGCCATcc                   <  1:1864649/99‑1 (MQ=255)
                                                                                cGGTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCGTGTCGACCACCAGTTTGGTGCCATCCa                  <  2:2501947/100‑1 (MQ=255)
                                                                                  gTCGCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCGTGTCGACCACCAGTTTGGTGCCATCCAGc                <  1:2077742/100‑1 (MQ=255)
                                                                                   tCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCGTGTCGACCACCAGTTTGGTGCCATCCAGc                >  2:88813/1‑100 (MQ=255)
                                                                                     gCAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCGTGTCGACCACCAGTTTGGTGCCATCCAGCTcc             >  2:2864449/1‑100 (MQ=255)
                                                                                      cAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCGTGTCGACCACCAGTTTGGTGCCATCCAGCTCCa            <  2:3418906/100‑1 (MQ=255)
                                                                                      cAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCGTGTCGACCACCAGTTTGGTGCCATCCAGCTCCa            >  1:2590139/1‑100 (MQ=255)
                                                                                      cAAAAGCTGGAAG‑AAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCGTGTCGACCACCAGTTTGGTGCCATCCAGCTCCa            >  2:4038235/1‑100 (MQ=255)
                                                                                       aaaaGCTGGAAGAAAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCGTGTCGACCACCAGTTTGGTGCCATCCAGCTCCa            <  2:2475486/100‑1 (MQ=255)
                                                                                       aaaaGCTGGAAG‑AAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCGTGTCGACCACCAGTTTGGTGCCATCCAGCTCCan           <  2:607038/100‑2 (MQ=255)
                                                                                        aaaGCTGGAAG‑AAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCGTGTCGACCACCAGTTTGGTGCCATCCAGCTCCAGt          <  2:3245433/100‑1 (MQ=255)
                                                                                           gCTGGAAG‑AAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCGTGTCGACCACCAGTTTGGTGCCATCCAGCTCCAGTTGc       <  2:1438136/100‑1 (MQ=255)
                                                                                               aaaaaaaaaGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCGTGTCGACCACCAGTTTGGTGCCATCCAGCTCCAGTTg        <  1:1135088/92‑1 (MQ=255)
                                                                                                 agaaAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCGTGTCGACCACCAGTTTGGTGCCATCCAGCTCCAGTTGCACGcc  <  2:3988922/100‑1 (MQ=255)
                                                                                                   |                                                                                                 
TTCTGCTTCACCGTGGAGCCATCAATGGCGGGCAGAATAAACTTCGGTCCGGAAACGCTTTTCAACCCTTTCTGGAAAGCCGGTCGCAAAAGCTGGAAGAAAAAGACCACCGCCGTGCCGATAAACACCCACTGCCAACGGACATCCGAAGCCGTGTCGACCACCAGTTTGGTGCCATCCAGCTCCAGTTGCACGCC  >  NC_000913/3595212‑3595408

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A