Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F244 I0 R1
|
270 |
114.4 |
5840133 |
93.3% |
5448844 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,468,389 |
T→C |
15.9% |
S489G (AGT→GGT) |
chiA ← |
periplasmic endochitinase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,468,389 | 0 | T | C | 15.9%
| 297.8
/ 51.4
| 139 | S489G (AGT→GGT) | chiA | periplasmic endochitinase |
| Reads supporting (aligned to +/- strand): ref base T (60/57); new base C (12/10); total (72/67) |
| Fisher's exact test for biased strand distribution p-value = 8.20e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.13e-01 |
Only 100 of 143 total aligned reads displayed.
GCTCTTCGTTGCTATAGCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCTTTCACGTACACAGTGGATGCGGACCATGCTTTCGCCGGTTCGTA > NC_000913/3468290‑3468488
|
gCTCTTCGTTGCTATAGCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACt > 2:2441969/1‑100 (MQ=255)
ctTCGTTGCTATAGCTCTGAGCCTTACCTAACGGCTTCCCCGGGCGGCTATTGCTACCGGTGGCGTTTTGCTTCGCCACCAGCGCAGGGTTGTCACttt > 1:1188071/1‑99 (MQ=255)
ctTCGTTGCTATAGCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACTTTg < 2:604852/100‑1 (MQ=255)
ctTCGTTGCTATAGCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACCTTg < 2:1841489/100‑1 (MQ=255)
tCGTTGCTATAGCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACTTTGCg < 2:1909646/100‑1 (MQ=255)
ttGCTATAGCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACCTTGCGTcc < 2:2230477/100‑1 (MQ=255)
tgggcaggcttatgaagcgctgttctggacgcaaagtgacaacccTGCTACCGGTGGCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACTTTGCGTCCa > 1:254511‑M1/46‑100 (MQ=255)
tGCTATAGCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACTTTGCGTCCa < 1:2878113/100‑1 (MQ=255)
cTATAGCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACTTTGCGTCCAGa < 2:1032921/100‑1 (MQ=255)
tataGCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACTTTGCGTCCAGaa > 1:2825617/1‑100 (MQ=255)
ataGCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACTTTGCGTCCAGAAc < 2:414146/100‑1 (MQ=255)
gCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACTTTGCGTCCAGAACAgc > 2:1552459/1‑100 (MQ=255)
gCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACTTTGCGTCCAGAACAgc < 1:2484660/100‑1 (MQ=255)
gCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACCTTGCGTCCAGAACAgc > 1:1610608/1‑100 (MQ=255)
gCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGCTTCGCCCCCCGAGCAGGGTTGTCACTTTGCGTCCAGAACAgc > 2:2514843/1‑100 (MQ=255)
tGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGCCACCAGAGCAGGGTCGTCACTTTGCGTCCAGAACAGCGCtt < 2:1215405/100‑1 (MQ=255)
aGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCa < 1:1083233/100‑1 (MQ=255)
gCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACCTTGCGTCCAGAACAGCGCTTCAt > 2:1664488/1‑100 (MQ=255)
ccTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATa < 2:1084114/100‑1 (MQ=255)
cTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATaa < 1:1627095/100‑1 (MQ=255)
tACCTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACCTTGCGTCCAGAACAGCGCTTCATAAGc > 2:1223831/1‑100 (MQ=255)
ccTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCt > 2:2719254/1‑100 (MQ=255)
cTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTg > 2:1745484/1‑100 (MQ=255)
tAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACCTTGCGTCCAGAACAGCGCTTCATAAGCCTGc > 2:2462357/1‑100 (MQ=255)
aaCGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGcc < 2:1856357/100‑1 (MQ=255)
tggacgcaaagtgacaaccctgctctggtggcgaaccaaaacgccaccggtagcaGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCa > 1:254511‑M2/56‑100 (MQ=255)
cGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCa < 2:1389531/100‑1 (MQ=255)
gCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATc < 2:1342418/100‑1 (MQ=255)
gCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATc < 1:1279207/100‑1 (MQ=255)
cTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATca < 1:486895/100‑1 (MQ=255)
cTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATca < 2:1523754/100‑1 (MQ=255)
tCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATcaac < 1:2176966/100‑1 (MQ=255)
tCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACCTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATcaac < 1:2557741/100‑1 (MQ=255)
cACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACCTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATcaacaa > 2:1732778/1‑100 (MQ=255)
aCGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATcaacaac < 2:2904081/100‑1 (MQ=255)
cGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATcaacaaca > 2:1906492/1‑100 (MQ=255)
gcggcTATTGCTACCGGTGGCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAAcg > 2:2793137/1‑100 (MQ=255)
cggcTATTGCTACCGGTGGCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAAcgc > 1:855100/1‑100 (MQ=255)
gcTATTGCTACCGGTGGCGTTTTGGTACGCCACCAGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGa > 1:647632/1‑100 (MQ=255)
cTATTGCTACCGGTGGCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGAt > 1:1762792/1‑100 (MQ=255)
tATTGCTACCGGTGGCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACCTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATc > 1:1279329/1‑100 (MQ=255)
cctgctctggtggcgaaccaaaacgccaccggtagcaGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCa > 2:539400‑M2/38‑100 (MQ=255)
ttGCTACCGGTGTCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCa < 1:179753/99‑1 (MQ=255)
ctgctctggtggcgaaccaaaacgccaccggtagcaGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCAc > 2:592208‑M2/37‑100 (MQ=255)
tgctctggtggcgaaccaaaacgccaccggagcaGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCt > 1:1333574‑M2/35‑100 (MQ=255)
gctctggtggcgaaccaaaacgcaaccggtagcaGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCACATCAACAACAACGCGATCACCt > 1:708701‑M2/35‑100 (MQ=255)
CTACCGGTGGCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCtt < 1:156026‑M1/100‑1 (MQ=255)
tctggtggcgaaccaaaacgccaccggtagcaGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCttt > 1:452134‑M2/33‑100 (MQ=255)
agcGGTGGCGTTTTGCTTCGCCACCAGTGCAGGGTTGTCGCTTTGCGTCCAGACCAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCtt < 1:2890614/96‑1 (MQ=255)
aCCGGTGGCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCTTTc > 1:955840/1‑100 (MQ=255)
ctggtggcgaaccaaaacgccaccagagcaGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCttt > 2:2818519‑M2/31‑98 (MQ=255)
ctggtggcgaaccaaaacgccaccagagcaGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCTTTCa > 2:2890538‑M2/31‑100 (MQ=255)
ccGGTGGCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCTTTCa < 1:78376/100‑1 (MQ=255)
cGGTGGCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCTTTCAc > 1:196025/1‑100 (MQ=255)
ggTGGCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCTTTCACg < 2:2564378/100‑1 (MQ=255)
gtggcgaaccaaaacgccaccagagcaGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACCACAACGCGATCACCTTTCACGt > 1:1165482‑M2/28‑100 (MQ=255)
ggCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCTTTCACGTac > 2:1010343/1‑100 (MQ=255)
ggCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCTTTCACGTac < 2:782102/100‑1 (MQ=255)
gCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACCTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCTTTCACGTaca < 2:2900100/100‑1 (MQ=255)
cGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCTTTCACGTacac > 2:701254/1‑100 (MQ=255)
gTTTTGGTTCGCCACCAGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCTTTCACGTAcaca > 2:629892/1‑100 (MQ=255)
gTTTTGGTTCGCCACCAGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCTTTCACGTAcaca < 2:742345/100‑1 (MQ=255)
ttttGGTTCGCCACCAGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCTTTCACGTACACAg < 1:2006506/100‑1 (MQ=255)
tttGGTTCGCCACCAGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCTTTCACGTACACAGt > 2:441304/1‑100 (MQ=255)
tttGGTTCGCCACCAGAGCAGGGTTGTCACTTTGCGTCAAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCTTTCACGTACACAGt > 2:2226209/1‑100 (MQ=255)
ttGGTTCGCCACCAGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCTTTCACGTACACAGTg < 1:1001776/100‑1 (MQ=255)
ttGGTCCGCCACCAGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTTCCCATCAACAACAACGCGATCACCTTTCACGTACACAGTg < 1:1730425/100‑1 (MQ=255)
gTTCGCCACCAGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATACGCCTGCCCATCAACAACAACGCGATCACCTTTCACGTACACAGTGGAt > 1:1691143/1‑100 (MQ=255)
gTTCGCCACCAGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCTTTCACGTACACAGTGGAt < 2:2071217/100‑1 (MQ=255)
gTTCGCCACCAGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCTTTCACGTACACAGTGGAt > 2:200036/1‑100 (MQ=255)
tCGCCACCAGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCTTTCACGTACACAGTGGATGc > 2:2563544/1‑100 (MQ=255)
tCGCCACCAGAGCAGGGTTGTCACCTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCTTTCACGTACACAGTGGATGc < 1:1410247/100‑1 (MQ=255)
cGCCACCAGAGCAGGGTTGTCACTTTGCGTCCAGCACAGCGCTTCATAAGCCTGCCCATCAACAACAAAGCGATCACCTTTCACGTACCCAGTGGATGc > 1:1177506/1‑99 (MQ=255)
cGCCACCAGAGCAGGGTTGTCACCTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCTTTCACGTACACAGTGGATGCg < 1:2004135/100‑1 (MQ=255)
nccaccaGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCTTTCACGTACACAGTGGATGCgg > 2:888092/2‑100 (MQ=255)
ccaccaGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCTTTCACGTACACAGTGGATGCgg < 1:2147366/99‑1 (MQ=255)
ccaccaGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCTTTCACGTACACAGTGGATGCGGa < 1:563387/100‑1 (MQ=255)
ccaccaGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCTTTCACGTACACAGTGGATGCGGa < 1:2718015/100‑1 (MQ=255)
ccaccaGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCTTTCACGTACACAGTGGATGCGGa < 2:1130844/100‑1 (MQ=255)
ccaccaGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCTTTCACGTACACAGTGGATGCGGa > 2:270536/1‑100 (MQ=255)
ccaccaGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCTTTCACGTACACAGTGGATGCGGa > 1:2472455/1‑100 (MQ=255)
cggtagcaGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCTTTCACGTACACAGTGGATGCGGACCa < 1:592205‑M2/92‑1 (MQ=255)
ccaGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCTTTCACGTACACAGTGGATGCGGACCa > 1:1068856/1‑100 (MQ=255)
caGAGCAGGGTTGTCACTTTGCGTCCCGAACAGCGCTTCATAAGCCTGACCATCAACAACACCGCGATCACCTTTGACGTACACAGTGGATGCGGACCAt > 1:1033210/1‑100 (MQ=255)
agagCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCTTTCACGTACACAGTGGATGCGGACCATg > 2:1046721/1‑100 (MQ=255)
agagCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCTTTCACGTACACAGTGGATGCGGACCATg > 2:104201/1‑100 (MQ=255)
gcaGGGTTGTCACCTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCTTTCACGTACACAGTGGATGCGGACCATGCtt > 1:820937‑M2/4‑100 (MQ=255)
gggTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCTATCAACCACAACGCGATCACCTTTCACGTACACAGTGGATGCGGACCATGCTTTCg > 1:40761/1‑100 (MQ=255)
gggTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCTTTCACGTACACAGTGCATGCGGACCATGCTTTc > 1:1412228/1‑99 (MQ=255)
gggTTGTCACCTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCTTTCACGTACACAGTGGATGCGGACCATGCTTTCg > 2:196245/1‑100 (MQ=255)
gTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCTTTCACGTACACAGTGGATGCGGACCATGCTTTCGcc < 2:1925364/100‑1 (MQ=255)
tGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCTTTCACGTACACAGTGGATGCGGACCATGCTTTCGCCgg > 2:1620957/1‑100 (MQ=255)
gTCACCTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCTTTCACGTACACAGTGGATGCGGACCATGCTTTCGCCGGt < 2:68069/100‑1 (MQ=255)
tCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCTTTCACGTACACAGTGGATGCGGACCATGCTTTCGCCGGtt < 1:801111/100‑1 (MQ=255)
tCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCTTTCACGTACACAGTGGATGCGGACCATGCTTTCGCCGGtt > 1:1487040/1‑100 (MQ=255)
cACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCTTTCACGTACACAGTGGATGCGGACCATGCTTTCGCCGGTTc > 2:1668816/1‑100 (MQ=255)
aCTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCTTTCACGTACACAGTGGATGCGGACCATGCTTTCGCCGGTTCg < 1:1828543/100‑1 (MQ=255)
cTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCTTTCACGTACACAGTGGATGCGGACCATGCTTTCGCCGGTTCGt > 2:1358585/1‑100 (MQ=255)
cTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCTTTCACGTACACAGTGGATGCGGACCATGCTTTCGCCGGTTCGt < 2:1123186/100‑1 (MQ=255)
tttGCGTCCAGAACAGCGCTTCATAAGCCTGCTCATCAACAACAACGCGATCACCTTTCACGTACACAGTGGATGCGGACCATGCTTTCGCCGGTTCGTa < 2:196026/100‑1 (MQ=255)
|
GCTCTTCGTTGCTATAGCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGCCACCAGAGCAGGGTTGTCACTTTGCGTCCAGAACAGCGCTTCATAAGCCTGCCCATCAACAACAACGCGATCACCTTTCACGTACACAGTGGATGCGGACCATGCTTTCGCCGGTTCGTA > NC_000913/3468290‑3468488
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
