Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F228 I0 R1 182 117.2 5818924 93.6% 5446512 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,304,813 (C)7→6 100% coding (1005/1245 nt) mtr ← tryptophan transporter of high affinity

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,304,8070C.89.9% 449.0 / 43.6 119coding (1011/1245 nt)mtrtryptophan transporter of high affinity
Reads supporting (aligned to +/- strand):  ref base C (3/8);  new base . (56/51);  total (60/59)
Fisher's exact test for biased strand distribution p-value = 2.04e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.24e-01

Only 100 of 124 total aligned reads displayed.

CGATGCACGGGCTAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCAAA  >  NC_000913/3304708‑3304902
                                                                                                   |                                                                                               
cgATGCACGGGCTAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGc                                                                                                 >  2:607056/1‑100 (MQ=255)
    gCACGGGCTAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGccccc                                                                                             >  1:1195762/1‑100 (MQ=255)
     cACGGGCTAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGcccccc                                                                                            >  1:8722/1‑100 (MQ=255)
        gggCTAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCcac                                                                                         <  2:910698/100‑1 (MQ=255)
           cTAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACt                                                                                     <  1:611250/100‑1 (MQ=255)
             aaCAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCACAACTg                                                                                    >  1:2075248/1‑100 (MQ=255)
             aaCAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCACAACTg                                                                                    >  1:2075230/1‑100 (MQ=255)
             aaCAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTgg                                                                                   >  1:2536783/1‑100 (MQ=255)
             aaCAGCGCCGGAACAACCCCCACCCAGATCCTAGCCGCTAAACCAGCACAACCAAACGCATCCAGGACACCACTCGGCCACAACAGccccccccacac                                                                                      >  1:2220977/1‑93 (MQ=255)
              aCAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGc                                                                                  <  2:1926797/100‑1 (MQ=255)
               cAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCg                                                                                 >  1:2289327/1‑100 (MQ=255)
               cAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAAACCGTTCGGGAACCACAGcccccttcaactgg                                                                                    >  1:843881/1‑89 (MQ=255)
                aGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCgg                                                                                <  1:2883347/100‑1 (MQ=255)
                 gcgcCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCACAACTGGCgg                                                                                <  2:1739598/100‑1 (MQ=255)
                  cgcCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCgggg                                                                              <  2:272291/100‑1 (MQ=255)
                  cgcCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCgggg                                                                              <  1:340703/100‑1 (MQ=255)
                      ggAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCACAACTGGCGGGGCaa                                                                           >  2:1178051/1‑100 (MQ=255)
                       gAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAg                                                                         >  2:1150626/1‑100 (MQ=255)
                        atctaTTGCCGCCCAGATGGTAGCCGCTCAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAgg                                                                        <  1:2424643/96‑1 (MQ=255)
                         aCAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGt                                                                       >  1:166042/1‑100 (MQ=255)
                          cAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTc                                                                      >  1:1880214/1‑100 (MQ=255)
                          cAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTc                                                                      >  2:2882333/1‑100 (MQ=255)
                          cAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTc                                                                      <  2:2589116/100‑1 (MQ=255)
                           aaTTGCCGCCCAGATGGTAGCCGCTAAACCAGCATCACCAATGGCGTACAGGAATCCGTTCGGGAACACCAG‑CCCCCCACAACTGGCGGGGCAAAGGTCa                                                                     <  2:1306028/100‑1 (MQ=255)
                           aaTTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCa                                                                     <  2:1909325/100‑1 (MQ=255)
                           aaTTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCa                                                                     <  1:385252/100‑1 (MQ=255)
                            aTTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAggagat                                                                    >  2:2424654/1‑96 (MQ=255)
                              tGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCa                                                                  >  2:2791090/1‑100 (MQ=255)
                               gccgccCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCaa                                                                 >  2:1579836/1‑100 (MQ=255)
                                ccgccCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCaa                                                                 >  1:787593/1‑99 (MQ=255)
                                 cgccGAGATGGTAGCCGCTAAAACAGCGTAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATg                                                               <  1:1193892/100‑1 (MQ=255)
                                 cgccCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATg                                                               >  1:1636939/1‑100 (MQ=255)
                                  gccCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGc                                                              >  1:572518/1‑100 (MQ=255)
                                  gccCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGc                                                              <  2:2536794/100‑1 (MQ=255)
                                     taGATGGTAGCCGCTAAACCTGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCTTAACTGGCGGGGCAAAGGTCAGCAATGCCGt                                                           <  1:2672283/99‑1 (MQ=255)
                                     cAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGt                                                           <  2:204403/100‑1 (MQ=255)
                                      aGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGtt                                                          <  2:2567211/100‑1 (MQ=255)
                                      aGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCCGGGCAAAGGTCAGCAATGCCGta                                                          >  2:2672294/1‑99 (MQ=255)
                                         tGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTc                                                       <  1:2722376/100‑1 (MQ=255)
                                            tAGCCGCTAAACCCGCATAACCCATCGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCTCAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTc                                                       <  1:2723439/97‑1 (MQ=255)
                                             tgCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGc                                                   <  2:1946566/99‑1 (MQ=255)
                                              gCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGca                                                  >  1:1946558/1‑99 (MQ=255)
                                                cGCTAAACCAGCATAACCCATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGc                                                <  1:997810/100‑1 (MQ=255)
                                                cGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGCACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCCGCCATGCCGTTTTCAAGCGGc                                                >  1:2269134/1‑100 (MQ=255)
                                                cGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGc                                                >  1:2806424/1‑100 (MQ=255)
                                                 gCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGcc                                               <  1:231893/100‑1 (MQ=255)
                                                  cTAAACCAGCATAACGAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGc                                                <  1:1409735/98‑1 (MQ=255)
                                                   tAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGccc                                              <  2:2389490/100‑1 (MQ=255)
                                                   tAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCca                                             >  1:193043/1‑100 (MQ=255)
                                                      aCCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAg                                          >  1:1998658/1‑100 (MQ=255)
                                                       ccAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGc                                         <  2:2852401/100‑1 (MQ=255)
                                                       ccAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGc                                         <  2:358960/100‑1 (MQ=255)
                                                       ccAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGc                                         >  1:358958/1‑100 (MQ=255)
                                                       ccAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGc                                         >  2:2559747/1‑100 (MQ=255)
                                                       ccAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGc                                         <  2:1197429/100‑1 (MQ=255)
                                                        cAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGcc                                        <  1:696329/100‑1 (MQ=255)
                                                         aGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACCG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCg                                       <  1:1078201/100‑1 (MQ=255)
                                                         aGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCg                                       <  1:2049898/100‑1 (MQ=255)
                                                         aGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCg                                       <  1:2858813/100‑1 (MQ=255)
                                                         aGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGAAATGCCGTTTTCAAGCGGAAcacacac                                        >  2:1693816/1‑96 (MQ=255)
                                                           cATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACTG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAg                                     <  1:1579832/100‑1 (MQ=255)
                                                           cATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAg                                     <  2:2781905/100‑1 (MQ=255)
                                                           cATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAg                                     <  2:183516/100‑1 (MQ=255)
                                                           cATAACCAATGGCGTACAGGAATCCGTCCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAg                                     <  1:2357390/100‑1 (MQ=255)
                                                            aTAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAg                                     <  2:2075237/100‑1 (MQ=255)
                                                            aTAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAgt                                    >  2:854082/1‑100 (MQ=255)
                                                             tAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAgtc                                   >  2:355117/1‑100 (MQ=255)
                                                             tAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCACCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCACACAGCCGAgtc                                   >  1:2400143/1‑100 (MQ=255)
                                                              aaCCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAgtcg                                  >  1:1925802/1‑100 (MQ=255)
                                                              aaCCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAgtcg                                  <  2:2289337/100‑1 (MQ=255)
                                                               aCCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAgtcg                                  <  2:2371343/100‑1 (MQ=255)
                                                               aCCAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CACCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAgtcgt                                 >  1:1554152/1‑100 (MQ=255)
                                                                ccAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAgtcgtc                                <  2:790157/100‑1 (MQ=255)
                                                                ccAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAgtcgtc                                >  1:2710191/1‑100 (MQ=255)
                                                                ccAATGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAgtc                                   >  1:1076430/1‑97 (MQ=255)
                                                                  aaTGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGa                              >  1:1491948/1‑100 (MQ=255)
                                                                   aTGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGaa                             >  2:1336214/1‑100 (MQ=255)
                                                                   aTGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGaa                             <  1:906281/100‑1 (MQ=255)
                                                                    tGGCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGTGGCCCACAGCCGAGTCGTCGaaa                            >  1:789734/1‑100 (MQ=255)
                                                                     ggCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAAc                           <  1:1629914/100‑1 (MQ=255)
                                                                      gCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAAcc                          >  1:676155/1‑100 (MQ=255)
                                                                      gCGTACAGGAATCCGTTCGGGAACAACAG‑CCCCACACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTGAAGCGGCCCACAGCCGAGTCGTCGAAAcc                          >  1:1751542/1‑100 (MQ=255)
                                                                       cGTACCGGAATCCGTTCGGAAAAAACA‑ACCCACCACAACTAGCGGGACAAAGGTCAGCAATGCCGTTTTCCAGCGGCCCACAGCCGAGTCGTCGAAAcc                          >  1:606177/1‑99 (MQ=255)
                                                                        gTACAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCCAGGCGTCGAAACCaa                        >  2:1755835/1‑100 (MQ=255)
                                                                          aCAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAAc                      >  2:599697/1‑100 (MQ=255)
                                                                           cAGGAATCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAaccaacca                     <  2:111709/100‑1 (MQ=255)
                                                                               gatctgTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATc                 <  2:59442/95‑1 (MQ=255)
                                                                               aaTCCGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATc                 <  2:901718/100‑1 (MQ=255)
                                                                                   cGTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGcc             >  1:388121/1‑100 (MQ=255)
                                                                                    gTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATcagatc            >  1:59441/1‑95 (MQ=255)
                                                                                    gTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCa            <  2:554942/100‑1 (MQ=255)
                                                                                    gTTCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCa            >  1:158267/1‑100 (MQ=255)
                                                                                      tCGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGa          >  2:1233774/1‑100 (MQ=255)
                                                                                       cGGGAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGAt         >  2:2288852/1‑100 (MQ=255)
                                                                                         ggAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAg       >  2:1290489/1‑100 (MQ=255)
                                                                                          gAACAACAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGt      >  2:1693176/1‑100 (MQ=255)
                                                                                           aacaacAG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTc     <  2:162101/100‑1 (MQ=255)
                                                                                            acaacaG‑CCCCCCACAACTTGCGCGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTc     <  1:881101/99‑1 (MQ=255)
                                                                                              aacaG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTcaaa  >  1:2875766/1‑100 (MQ=255)
                                                                                              aacaG‑CCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTcaaa  <  1:2288842/100‑1 (MQ=255)
                                                                                                   |                                                                                               
CGATGCACGGGCTAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCAAA  >  NC_000913/3304708‑3304902

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A