Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A16 F258 I1 R1
|
132 |
116.1 |
5785507 |
94.2% |
5449947 |
99.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,512,561 |
Δ1 bp |
intergenic (‑217/+73) |
yhfZ ← / ← trpS |
putative DNA‑binding transcriptional regulator/tryptophanyl‑tRNA synthetase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,512,560 | 0 | T | . | 99.1%
| 470.1
/ ‑2.6
| 109 | intergenic (‑216/+74) | yhfZ/trpS | putative DNA‑binding transcriptional regulator/tryptophanyl‑tRNA synthetase |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base . (59/49); total (60/49) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.46e-01 |
Only 100 of 113 total aligned reads displayed.
ATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCA > NC_000913/3512461‑3512655
|
aaaaaaCCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCAtact > 2:2381392/1‑97 (MQ=255)
aaaaaaCCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCAtact > 1:1602519/1‑97 (MQ=255)
aaaaaaCCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCAtact > 1:2429727/1‑97 (MQ=255)
aaaCCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTg > 2:2737797/1‑100 (MQ=255)
ccGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAg > 2:924576/1‑100 (MQ=255)
cGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAgg < 2:2331328/100‑1 (MQ=255)
cGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAgg < 1:389743/100‑1 (MQ=255)
gggTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGc < 2:192297/100‑1 (MQ=255)
ggTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGcc < 1:481540/100‑1 (MQ=255)
ggTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGcc < 1:2381407/100‑1 (MQ=255)
ccGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAg < 2:1557684/100‑1 (MQ=255)
cGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAgg < 2:445565/100‑1 (MQ=255)
ggTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGc < 1:513939/100‑1 (MQ=255)
gTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCg < 1:1601928/100‑1 (MQ=255)
cAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGAtgcggcgtgaa < 1:79359/100‑11 (MQ=25)
cAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGAtgcggcgtgaa > 1:2394810/1‑90 (MQ=25)
cAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCa > 1:2042375/1‑100 (MQ=255)
agTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCAcgc < 2:631115/100‑1 (MQ=255)
gTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCAcgcc < 2:1206000/100‑1 (MQ=255)
gTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCAcgcc > 2:2811454/1‑100 (MQ=255)
tgatgaTAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGTCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCAcgccg < 2:1548847/100‑1 (MQ=255)
tgatgaTAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCAcgccg > 2:2001419/1‑100 (MQ=255)
gatgatAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGAGCA‑TACTTTGTAGGCCGGATAAGGCGTTCAcgccgc > 1:2026408/1‑100 (MQ=255)
atgatAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATGCGGCGTGAAcgcctta < 1:311211/100‑4 (MQ=21)
atgatAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCa > 1:912538/1‑100 (MQ=255)
gatAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATc > 2:370260/1‑100 (MQ=255)
atAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATcc > 1:1794891/1‑100 (MQ=255)
tAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCg > 1:1936934/1‑100 (MQ=255)
tAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCg > 1:909548/1‑100 (MQ=255)
tAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TAATTTGTAGGCAGGTTTAGGCGTTCACGCCGCATCCg > 2:838500/1‑100 (MQ=25)
aaaaGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCgg > 2:248014/1‑100 (MQ=255)
aaaaGCAAAATTGCCGGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCgg < 1:2840629/100‑1 (MQ=255)
aaGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCa < 1:2472066/100‑1 (MQ=255)
aaGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCa > 2:1751146/1‑100 (MQ=255)
aaGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCa < 2:1967994/100‑1 (MQ=255)
gCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATg < 1:1031353/100‑1 (MQ=255)
gCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATg > 2:1256585/1‑100 (MQ=255)
gCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATg < 1:2119692/100‑1 (MQ=255)
gCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATg < 1:35020/100‑1 (MQ=255)
aaaaTTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGaa > 1:1648535/1‑100 (MQ=255)
aaTTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACa < 2:2835440/100‑1 (MQ=255)
aTTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACaa < 2:2681461/100‑1 (MQ=255)
tGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAg < 1:2104823/100‑1 (MQ=255)
ccTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAgcg > 1:2447086/1‑100 (MQ=255)
cTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAgcgc < 1:705945/100‑1 (MQ=255)
tGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAgcgc > 2:2454810/1‑99 (MQ=255)
tGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCa > 1:1033247/1‑100 (MQ=255)
gATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCaa > 2:2663867/1‑100 (MQ=255)
aTGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAAt < 1:2368982/100‑1 (MQ=255)
cgcTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTg > 2:1220996/1‑100 (MQ=255)
cgcTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTg < 1:2142783/100‑1 (MQ=255)
gcTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGc > 2:87287/1‑100 (MQ=255)
cTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGcc < 1:1384223/100‑1 (MQ=255)
cTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGcc > 2:2324160/1‑100 (MQ=255)
aCGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAg > 1:1535791/1‑100 (MQ=255)
aCGCTTATCAGGACTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAGGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAg > 1:1901235/1‑100 (MQ=25)
cGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGc > 2:1965264/1‑100 (MQ=255)
cGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGc > 2:773556/1‑100 (MQ=255)
cGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGc < 2:1230390/100‑1 (MQ=255)
gCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCa > 2:1233228/1‑100 (MQ=255)
gCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCa > 2:140635/1‑100 (MQ=255)
cTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCaa > 1:1928905/1‑100 (MQ=255)
tATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATa > 1:2100741/1‑100 (MQ=255)
aTCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAAt > 1:477998/1‑98 (MQ=255)
aTCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAg > 1:934390/1‑100 (MQ=255)
cAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTg < 2:909547/100‑1 (MQ=255)
cAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTg < 2:22999/100‑1 (MQ=255)
gCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAAt < 1:1965278/100‑1 (MQ=255)
gCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAAt < 1:2387764/100‑1 (MQ=255)
gCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAAt > 1:2731283/1‑100 (MQ=255)
ccTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAAtt < 1:2811475/100‑1 (MQ=255)
ccTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAAtt > 1:1876548/1‑100 (MQ=255)
ccTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAAtt > 1:971041/1‑100 (MQ=255)
cTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTa > 2:1869897/1‑100 (MQ=255)
aCATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACg < 1:2737818/100‑1 (MQ=255)
cATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACgg < 1:924578/100‑1 (MQ=255)
cATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACgg < 1:664350/100‑1 (MQ=255)
cATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACgg > 2:1007248/1‑100 (MQ=255)
tttCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCt > 2:1836439/1‑100 (MQ=255)
ttCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCtt > 2:2538067/1‑100 (MQ=255)
tCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTc < 1:1316780/100‑1 (MQ=255)
tCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTc > 2:631220/1‑100 (MQ=255)
ccTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCg < 2:989965/100‑1 (MQ=255)
cTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGc > 2:2439925/1‑100 (MQ=255)
cTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGc > 1:1583862/1‑100 (MQ=255)
cTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGc < 1:2339894/100‑1 (MQ=255)
cTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGc > 2:2589793/1‑100 (MQ=255)
ttGCAATAGGTTCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGcc > 2:2740636/1‑100 (MQ=21)
tGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCca < 1:848502/100‑1 (MQ=255)
tGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCca > 2:2782712/1‑100 (MQ=255)
tGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCca > 2:2764753/1‑100 (MQ=255)
gCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCcac > 1:544450/1‑100 (MQ=255)
gCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCcac > 1:2521265/1‑100 (MQ=255)
cAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCcaca < 1:1829450/100‑1 (MQ=255)
atatGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACaaa < 2:2023202/100‑1 (MQ=255)
atatGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACaaa < 1:337835/100‑1 (MQ=255)
tatGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACaaaa > 2:265175/1‑100 (MQ=255)
tgtgCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAAcc > 2:2581584/1‑100 (MQ=255)
tgtgCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAAcc < 2:961390/100‑1 (MQ=255)
gtgCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCa > 1:770874/1‑100 (MQ=255)
|
ATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCA > NC_000913/3512461‑3512655
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
