Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A16 F201 I0 R1
|
306 |
176.9 |
8831342 |
93.4% |
8248473 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,512,561 |
Δ1 bp |
68.6% |
intergenic (‑217/+73) |
yhfZ ← / ← trpS |
putative DNA‑binding transcriptional regulator/tryptophanyl‑tRNA synthetase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,512,560 | 0 | T | . | 68.6%
| 224.0
/ 246.7
| 172 | intergenic (‑216/+74) | yhfZ/trpS | putative DNA‑binding transcriptional regulator/tryptophanyl‑tRNA synthetase |
| Reads supporting (aligned to +/- strand): ref base T (29/25); new base . (56/62); total (85/87) |
| Fisher's exact test for biased strand distribution p-value = 5.12e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.86e-01 |
Only 100 of 179 total aligned reads displayed.
ATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCAA > NC_000913/3512461‑3512656
|
aTAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCAt > 1:2964412/1‑100 (MQ=255)
aTAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCAt > 2:3275777/1‑100 (MQ=255)
aTAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCAt > 2:1519242/1‑100 (MQ=255)
aaaaaaCCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCAtact > 2:2739997/1‑97 (MQ=255)
aaaaaaCCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCAtact > 2:2530660/1‑97 (MQ=255)
aaaaCCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATACGTGCATTACtt > 1:1384944/1‑100 (MQ=255)
aaaCCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTg > 2:828304/1‑100 (MQ=255)
aaaCCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTg < 1:3195424/100‑1 (MQ=255)
cttccgatctCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGt < 2:173992/91‑1 (MQ=25)
aaCCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGt < 2:3160049/100‑1 (MQ=255)
aaCCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGt < 1:2693735/100‑1 (MQ=255)
aCCGTGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTa < 2:3911663/100‑1 (MQ=255)
aCCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTCATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTa < 1:4085318/100‑1 (MQ=255)
ccGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTgaga > 2:1288208/1‑97 (MQ=255)
ccGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAg > 1:1952057/1‑100 (MQ=255)
ccGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAg < 1:3333715/100‑1 (MQ=255)
ccGGGTTT‑CCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAg > 1:697561/1‑99 (MQ=255)
ggTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGcc < 1:1150260/100‑1 (MQ=255)
ggTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGcc < 2:3620492/100‑1 (MQ=255)
gTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGcc > 2:2925301/1‑100 (MQ=255)
ccccGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCACTATGTGCATTACTTTGTAAGCCGGa > 2:3678788/1‑99 (MQ=255)
ccccGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGAt > 2:3733/1‑100 (MQ=255)
ccccGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAgatcggaag > 1:173992/1‑92 (MQ=37)
ccccGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATa > 1:2263623/1‑100 (MQ=255)
cccGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATaa > 1:3565985/1‑100 (MQ=255)
cGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAgg < 2:616633/100‑1 (MQ=255)
cGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAgg < 1:1277486/100‑1 (MQ=255)
ggTTTCAGAGTGATGATAAAAGCAAAATTTCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGc < 1:920989/100‑1 (MQ=255)
gTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGc > 1:3633283/1‑100 (MQ=255)
tCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTc > 1:3508456/1‑100 (MQ=255)
agTGATGATAAAAGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCAcgc < 2:4386409/100‑1 (MQ=255)
agTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCAcgc < 1:1446683/100‑1 (MQ=255)
gTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCAcgcc < 1:4138767/100‑1 (MQ=255)
gTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAACATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCAcgcc < 2:2268461/100‑1 (MQ=255)
tgatgaTAAAAGCAACATTGCCTGATGCGCTACGCGTATCAGGCGTACTTTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAAGCGTTCAcgcc < 1:2542770/100‑1 (MQ=37)
tgatgaTAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCAcgcc < 2:1329173/100‑1 (MQ=255)
tgatgaTAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCAcgccg < 2:1391070/100‑1 (MQ=255)
gatgatAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCAcgccg < 2:2149979/100‑1 (MQ=255)
gatgatAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCAcgccg > 1:261952/1‑100 (MQ=255)
aatgCAAAATTGCCTGATGCGCTACGCTTATCAGGTCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATGCGGCGTGGACGCCTTATCCGGc < 1:60901/97‑1 (MQ=21)
aaaGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGc < 2:1410645/100‑1 (MQ=255)
aaaGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGc > 2:3738399/1‑100 (MQ=255)
aaGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGc < 1:2335514/100‑1 (MQ=255)
aaGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCa > 1:2746960/1‑100 (MQ=255)
aaGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCa < 1:214313/100‑1 (MQ=255)
gCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATg < 1:2662964/100‑1 (MQ=255)
cAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGa > 1:2423127/1‑100 (MQ=255)
cAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGa > 2:2061284/1‑100 (MQ=255)
taccTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGGCGCATCCGGCATGAACAAAg < 1:2684446/98‑1 (MQ=255)
tGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAg < 2:52658/100‑1 (MQ=255)
tGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAg < 2:3489049/100‑1 (MQ=255)
tGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAg < 2:1125686/100‑1 (MQ=255)
gCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCCATATGTGCA‑TACTTTGTAGGCCGGACAAAGCGTTCACGCCGCATCCGACATGAACACAgc > 1:3783222/1‑100 (MQ=25)
gCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAgc < 2:166187/100‑1 (MQ=255)
ccTGATGCGCTACGCTTATCTGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTACGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACaaa > 1:994006/1‑98 (MQ=255)
cTGATGCGCTACGCTTATCAAGCCTACATCTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAACgcgc > 1:873297/1‑100 (MQ=21)
gcgcTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAAttt < 2:4275986/100‑1 (MQ=255)
cgcTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAAttt > 2:4178763/1‑100 (MQ=255)
cgcTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAAttt > 2:4178865/1‑100 (MQ=255)
cTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAGGCGCAATTTGc < 1:2316717/99‑1 (MQ=255)
tACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCa > 1:3308480/1‑100 (MQ=255)
cGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAg > 2:3490735/1‑100 (MQ=255)
cGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAg < 1:4178732/100‑1 (MQ=255)
cGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGc < 2:3536081/100‑1 (MQ=255)
cGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGc < 2:382395/100‑1 (MQ=255)
cGCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGc > 2:237470/1‑100 (MQ=255)
cGCTTATAAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGTATAAGGCGTTCACGCCGCATCCTGCATGAACAAAGCGCAATTTGc > 1:1045295/1‑97 (MQ=255)
agcgcaTCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGc < 1:224128/95‑1 (MQ=255)
gCTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGc < 1:3881090/99‑1 (MQ=255)
cTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCa < 1:3211122/100‑1 (MQ=255)
cTTATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCaa > 1:566906/1‑100 (MQ=255)
tATCAGGCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATa > 1:2968922/1‑100 (MQ=255)
tCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAg < 1:310742/100‑1 (MQ=255)
gtccTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGa < 2:2275514/98‑1 (MQ=255)
gCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAAt > 1:1819238/1‑100 (MQ=255)
gCCTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAAt < 2:1360386/100‑1 (MQ=255)
ccTACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCAGCATTCGGCATGAAAAAAGCGCAATTTGCCAGCAATAGTGAAtt > 1:1875829/1‑100 (MQ=25)
tACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTAc > 2:2460880/1‑100 (MQ=255)
tACATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTAc > 2:677964/1‑100 (MQ=255)
aCATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACg < 2:2218390/100‑1 (MQ=255)
cATTTCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACgg < 1:1519236/100‑1 (MQ=255)
tttCCTTGCAATATGTGCA‑TACTTTGTAGGCCCGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACg < 1:4045229/97‑1 (MQ=255)
tCCTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTc > 1:2834324/1‑100 (MQ=255)
cTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAATGCGTTCACGCCTCATACGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGc < 1:288143/100‑1 (MQ=25)
cTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGc > 1:1700801/1‑100 (MQ=255)
cTTGCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGc < 1:632527/100‑1 (MQ=255)
ttGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGc > 1:2543309/1‑100 (MQ=255)
tGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGcc > 2:644044/1‑100 (MQ=255)
gCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCca < 2:2607488/100‑1 (MQ=255)
gCAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGcccc < 2:2968939/100‑3 (MQ=255)
cAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCcac < 2:728633/100‑1 (MQ=255)
cAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCcaca < 2:3976961/100‑1 (MQ=255)
cAATATGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCcaca < 2:2556387/100‑1 (MQ=255)
aaTATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCcaca < 2:2385400/100‑1 (MQ=255)
atatGTGCA‑TACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCTCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACaaa < 1:3527136/100‑1 (MQ=255)
atGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACaaaa > 2:3055328/1‑100 (MQ=255)
tgtgCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAAc < 1:226484/100‑1 (MQ=255)
tgCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCa < 1:2072613/100‑1 (MQ=255)
gCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCaa > 2:1443166/1‑100 (MQ=255)
gCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCaa > 1:443192/1‑100 (MQ=255)
|
ATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCAA > NC_000913/3512461‑3512656
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
