Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A16 F258 I1 R1 132 116.1 5785507 94.2% 5449947 99.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,100,447 (T)6→5 coding (79/1035 nt) rhaT ← L‑rhamnose:proton symporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,100,4420T.93.8% 369.8 / 17.9 96coding (84/1035 nt)rhaTL‑rhamnose:proton symporter
Reads supporting (aligned to +/- strand):  ref base T (4/2);  new base . (40/50);  total (44/52)
Fisher's exact test for biased strand distribution p-value = 4.08e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 108 total aligned reads displayed.

AAATTCGGTAGTAACAGGGCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTACTTTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTACTCATCTTCTTATCCT  >  NC_000913/4100344‑4100536
                                                                                                  |                                                                                              
aaaTTCGGTAGTAACAGGGCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTACtt                                                                                               <  2:1447407/100‑1 (MQ=255)
 aaTTCGGTAGTAACAGGGCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTACttt                                                                                              >  1:1043339/1‑100 (MQ=255)
 aaTTCGGTAGTAACAGGGCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTACttt                                                                                              <  2:1948473/100‑1 (MQ=255)
  aTTCGGTAGTAACAGGGCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTACtttt                                                                                             >  1:1978807/1‑100 (MQ=255)
   ttCGGTAGTAACAGGGCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTACttttt                                                                                            <  1:2137107/100‑1 (MQ=255)
   ttCGGTAGTAACAGGGCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTACttttt                                                                                            <  1:1775120/100‑1 (MQ=255)
   ttCGGTAGTAACAGGGCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTACttttt                                                                                            <  2:266918/100‑1 (MQ=255)
    tCGGTAGTAACAGGGCGCTGCTGGCCCACGGCAGAATATTCCACGAAACAATCCCAGCGACTGACCACATGGTTTCCCATGATCATTTTTTTACtttttg                                                                                           <  2:1725790/100‑2 (MQ=255)
     cGGTAGTAACAGGGCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTACtttttga                                                                                          <  2:734151/100‑3 (MQ=255)
     cGGTAGTAACAGGGCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTACtttttga                                                                                          <  1:1431815/100‑3 (MQ=255)
      ggTAGTAACAGGGCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAtttttt                                                                                            >  2:1066789/1‑97 (MQ=255)
       gtagtaACAGGGCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTACTTTTTTGaa                                                                                        >  1:613026/1‑100 (MQ=255)
        tagtaACAGGGCGCTGATGGCCCACGGCAGAATAATCCACGAACCAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACg                                                                                      <  2:1850608/100‑1 (MQ=255)
        tagtaACAGGGCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACg                                                                                      <  2:1499578/100‑1 (MQ=255)
        tagtaACAGGGCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACg                                                                                      <  1:2751508/100‑1 (MQ=255)
         agtaACAGGGCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACgg                                                                                     <  1:1476760/100‑1 (MQ=255)
         agtaACAGGGCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACgg                                                                                     >  2:2189587/1‑100 (MQ=255)
          gtaACAGGGCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGCCCATTTTTTTAC‑TTTTTGAACGGa                                                                                    >  1:1091391/1‑100 (MQ=255)
          gtaACAGGGCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGa                                                                                    >  1:2051083/1‑100 (MQ=255)
           taACAGGGCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAg                                                                                   >  2:1933823/1‑100 (MQ=255)
           taACAGGGCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAg                                                                                   <  2:2818351/100‑1 (MQ=255)
           naaCAGGGCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTATCCCATGACCATTTTTTTAC‑TTTTTGAACGGAg                                                                                   >  2:2270236/2‑100 (MQ=255)
            aaCAGGGCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATttttttttttttttttcggag                                                                                    >  2:1143943/1‑92 (MQ=255)
             aCAGGGCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGACCGGAGc                                                                                  >  1:800218/1‑99 (MQ=255)
             aCAGGGCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCg                                                                                 <  2:1180269/100‑1 (MQ=255)
              cAGGGCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGt                                                                                <  1:897164/100‑1 (MQ=255)
                   cgcTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTaaaaa                                                                           >  1:466821/1‑100 (MQ=255)
                      tGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAg                                                                        <  2:182119/100‑1 (MQ=255)
                      tGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAg                                                                        >  1:2235592/1‑100 (MQ=255)
                        aTGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGc                                                                      <  2:535884/100‑1 (MQ=255)
                          ggCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTg                                                                    >  1:1090434/1‑100 (MQ=255)
                           gCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATTACCATTTTTTGAC‑TTTTTGAACGGAGCGTAAAAACAGGCttc                                                                   <  1:1950402/100‑3 (MQ=255)
                           gCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGc                                                                   <  2:1978793/100‑1 (MQ=255)
                           gCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGc                                                                   >  2:1389990/1‑100 (MQ=255)
                            cccACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTACTTTTTT‑AACGGAGCGTAAAAACAGGCTGCa                                                                  >  2:336289/1‑100 (MQ=255)
                             ccACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCan                                                                 <  2:590729/100‑2 (MQ=255)
                              cACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTACTTTTTTGAACGGAGCGTAAAAACAGGCTGCAc                                                                 <  1:1268939/100‑1 (MQ=255)
                              cACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTACTTTTTT‑AACGGAGCGTAAAAACAGGCTGCACt                                                                >  2:1727185/1‑100 (MQ=255)
                               aCGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACt                                                                <  1:242636/99‑1 (MQ=255)
                               aCGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTg                                                               <  1:1782721/100‑1 (MQ=255)
                                 ggCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGc                                                             <  1:2674512/100‑1 (MQ=255)
                                  gCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGcc                                                            <  1:2532721/100‑1 (MQ=255)
                                  gCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGcc                                                            >  1:85558/1‑100 (MQ=255)
                                  gCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGcc                                                            >  2:1733586/1‑100 (MQ=255)
                                  gCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGcc                                                            <  1:2629753/100‑1 (MQ=255)
                                  gCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTACCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGcc                                                            <  2:196842/100‑1 (MQ=255)
                                     gAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCcgcg                                                         >  2:2785627/1‑100 (MQ=255)
                                      aataatCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCgcgc                                                        <  1:2688009/100‑1 (MQ=255)
                                       ataatCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGcc                                                       <  2:1053507/100‑1 (MQ=255)
                                        taatCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCg                                                      <  2:356964/100‑1 (MQ=255)
                                          atCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGAt                                                    <  1:490302/100‑1 (MQ=255)
                                           tCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATc                                                   <  2:1024275/100‑1 (MQ=255)
                                            ccACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTACTTTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATc                                                   <  2:2582848/100‑1 (MQ=255)
                                            ccACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCa                                                  >  2:2749295/1‑100 (MQ=255)
                                            ccACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCa                                                  <  2:1583019/100‑1 (MQ=255)
                                             cACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCaa                                                 >  1:2696182/1‑100 (MQ=255)
                                               cGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAAt                                               <  2:2201705/100‑1 (MQ=255)
                                                    cAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCaa                                          <  2:418655/100‑1 (MQ=255)
                                                      aTCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCaaaa                                        >  2:540498/1‑100 (MQ=255)
                                                      aTCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCaaaa                                        <  1:127152/100‑1 (MQ=255)
                                                          cACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATc                                    >  1:1417461/1‑100 (MQ=255)
                                                           aCCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATcc                                   >  1:1909738/1‑100 (MQ=255)
                                                              gACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCa                                >  1:416009/1‑100 (MQ=255)
                                                              gACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCa                                >  1:416008/1‑100 (MQ=255)
                                                              gACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCa                                >  2:1661961/1‑100 (MQ=255)
                                                                 tGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCATAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCg                             <  2:144251/100‑1 (MQ=255)
                                                                  gACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGt                            >  1:1083457/1‑100 (MQ=255)
                                                                     cacaTGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAAt                         >  2:1610662/1‑100 (MQ=255)
                                                                     cacaTGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAAt                         >  1:963768/1‑100 (MQ=255)
                                                                     cacaTGGTTTCCCATGACCATTTTTTT‑TTTTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAAt                         >  2:2842373/1‑100 (MQ=255)
                                                                      acaTGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATc                        >  2:2846386/1‑100 (MQ=255)
                                                                      acaTGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATc                        >  1:305462/1‑100 (MQ=255)
                                                                       caTGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATcg                       >  1:863670/1‑100 (MQ=255)
                                                                        aTGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATcgc                      <  2:2696162/100‑1 (MQ=255)
                                                                         tGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTCATcgcg                     <  2:2452349/100‑1 (MQ=255)
                                                                         tGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATcgcg                     <  2:601770/100‑1 (MQ=255)
                                                                         tGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATcgcg                     >  1:125155/1‑100 (MQ=255)
                                                                         tGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATcgcg                     <  1:1843600/100‑1 (MQ=255)
                                                                           gTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGtt                   >  1:1329642/1‑100 (MQ=255)
                                                                            tttCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTa                  <  1:1727198/100‑1 (MQ=255)
                                                                             ttCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTAc                 <  2:2824706/100‑1 (MQ=255)
                                                                             ttCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTAc                 <  1:1126005/100‑1 (MQ=255)
                                                                             ttCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTAc                 <  1:780042/100‑1 (MQ=255)
                                                                                ccATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTACTCa              >  2:2272371/1‑100 (MQ=255)
                                                                                    gACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAACGCCAAAATATCCCCATCGTAATCGCGTTACTCAtctt          >  2:1947358/1‑100 (MQ=255)
                                                                                     aCCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTACTCAtcttc         <  2:816593/100‑1 (MQ=255)
                                                                                      ccATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTACTCAtcttct        <  2:2349257/100‑1 (MQ=255)
                                                                                      ccATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTACTCAtcttc         <  2:800217/99‑1 (MQ=255)
                                                                                       cATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTACTCATcttctt       >  1:976045/1‑100 (MQ=255)
                                                                                        aTTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTACTCATCTTCTTa      <  1:2846407/100‑1 (MQ=255)
                                                                                        aTTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTACTCATCTTCTTa      <  2:416007/100‑1 (MQ=255)
                                                                                        aTTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTACTCATCTTCTTa      <  2:416008/100‑1 (MQ=255)
                                                                                           tttttAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTACTCATCTTCTTATcc   <  2:322449/100‑1 (MQ=255)
                                                                                           tttttAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTACTCATCTTCTTATcc   <  2:2430704/100‑1 (MQ=255)
                                                                                           tttttAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTACTCATCTTCTTATcc   <  2:466819/100‑1 (MQ=255)
                                                                                           tttttAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTACTCATCTTCTTATcc   <  1:1389995/100‑1 (MQ=255)
                                                                                           tttttAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTACTCATCTTCTTATcc   <  2:1043337/100‑1 (MQ=255)
                                                                                           tttttAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTACTCATCTTCTTATcc   <  2:1563157/100‑1 (MQ=255)
                                                                                            ttttAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTACTCATCTTCTTATCCt  >  1:527861/1‑100 (MQ=255)
                                                                                            ttttAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTACTCATCTTCTTATCCt  >  1:527160/1‑100 (MQ=255)
                                                                                                  |                                                                                              
AAATTCGGTAGTAACAGGGCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTACTTTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTACTCATCTTCTTATCCT  >  NC_000913/4100344‑4100536

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A