Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A16 F258 I0 R1	432	103.0	5191697	92.7%	4812703	99.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_000913	4,100,447	(T)_6→5	100%	coding (79/1035 nt)	rhaT ←	L‑rhamnose:proton symporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,100,442	0	T	.	71.7%	178.9 / 131.7	106	coding (84/1035 nt)	rhaT	L‑rhamnose:proton symporter
Reads supporting (aligned to +/- strand): ref base T (14/15); new base . (37/39); total (52/54)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 116 total aligned reads displayed.

AAATTCGGTAGTAACAGGGCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTACTTTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTACTCATCTTCTTATCCTCA  >  NC_000913/4100344‑4100538

aaaTTCGGTAGTAACAGGGCGCTGATGTCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTACtt                                                                                                 <  1:1671848/100‑1 (MQ=255)

    tCGGTAGTAACAGGGCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTACtttttt                                                                                             <  2:925210/100‑1 (MQ=255)

    tCGGTAGTAACAGGGCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTACtttttg                                                                                             <  2:2279136/100‑2 (MQ=255)

     cGGTAGTAACAGGGCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTACTTTTTTg                                                                                            <  2:133609/100‑1 (MQ=255)

      ggTAGTAACAGGGCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTACtttttgaa                                                                                           >  2:1066393/1‑97 (MQ=255)

      ggTAGTAACAGGGCGCTGATGGCCCACGGCAGAATAATCCACGAAACAACCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTACtttttga                                                                                            <  1:2047219/99‑3 (MQ=255)

       gtagtaACAGGGCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTACtttttgaac                                                                                          >  1:1958123/1‑96 (MQ=255)

       atagtcACAGGCCGCCGATAGCCCACGGCAGAATAATCCCCGAAACAATCCCACCGACTGACTACATGTTTTACCATGACCATTTTTTTTCttttt                                                                                              >  1:266447/2‑96 (MQ=255)

        tagtaACAGGGCGCTGATGGCCGACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTACTGTTTGGacg                                                                                         <  1:2205459/100‑3 (MQ=255)

        tagtaACAGGGCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTACttttttaacg                                                                                         >  1:1069387/1‑96 (MQ=255)

         agtaACAGGGCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACgg                                                                                       >  1:1021058/1‑100 (MQ=255)

          gtaACAGGGCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTACtttttt                                                                                             >  1:1136578/1‑94 (MQ=255)

           taACAGGGCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAg                                                                                     >  2:1103712/1‑100 (MQ=255)

            aaCAGGGCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAATTTTTTGAACGGa                                                                                      >  1:1275473/1‑99 (MQ=255)

             aCAGGGCGCTGATGGCCGACGGCAGAATAATCCACGTAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTACTTTTTTGAACGGAGc                                                                                    <  1:253261/100‑1 (MQ=255)

             aCAGGGCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATtttttttttttttttac                                                                                          >  1:693434/1‑91 (MQ=255)

               aGGGCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTa                                                                                 >  2:25129/1‑100 (MQ=255)

                gggCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTaa                                                                                <  2:707082/100‑1 (MQ=255)

                gggCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTaa                                                                                >  2:1430531/1‑100 (MQ=255)

                 ggCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTACTTTTTTGAACGGAGCGTaa                                                                                <  2:2066739/100‑1 (MQ=255)

                 ggCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTaaa                                                                               >  2:1684610/1‑100 (MQ=255)

                  gcgcTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTaaaa                                                                              >  2:2525172/1‑100 (MQ=255)

                   cgcTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTaaaaa                                                                             >  1:1746703/1‑100 (MQ=255)

                     cTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACa                                                                           <  1:2539584/100‑1 (MQ=255)

                     cTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACa                                                                           <  2:832307/100‑1 (MQ=255)

                     cTGATAGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGGCCGTAAAAACa                                                                           >  1:526073/1‑100 (MQ=255)

                       gATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAgg                                                                         >  2:138764/1‑100 (MQ=255)

                        aTGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGc                                                                        <  1:2132088/100‑1 (MQ=255)

                          ggCCCACGGCAGAATAATCCACGGAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTg                                                                      <  1:437524/100‑1 (MQ=255)

                          ggCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTg                                                                      <  2:462712/100‑1 (MQ=255)

                          ggCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTg                                                                      <  2:1529712/100‑1 (MQ=255)

                            cccACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTAAACGGAGCGTAAAAACAGGCTGCa                                                                    >  1:682587/1‑100 (MQ=255)

                            cccACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGCTTCCCATGACCATTTTTATACATTTTTGAACGGAGCGTAAAAACAgac                                                                        >  2:832121/1‑95 (MQ=255)

                             ccACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCAc                                                                   <  2:1775907/100‑1 (MQ=255)

                              cACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACt                                                                  >  2:1659496/1‑100 (MQ=255)

                                 ggCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGc                                                               <  2:841381/100‑1 (MQ=255)

                                 ggCAGAATAAGCCACGAAACAAGCATACCGACTGACCACATGGTTTCACATGACCAAGTTTTTAC‑TTTTTGAACGGAGAGTACAAACAGGCTGCACTg                                                                 <  1:2551713/98‑1 (MQ=255)

                                    aGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCcgc                                                            <  1:982104/100‑1 (MQ=255)

                                     gAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCcgcg                                                           >  1:1579257/1‑100 (MQ=255)

                                      aataatCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCgcgc                                                          <  1:549714/100‑1 (MQ=255)

                                       ataatCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCcgcg                                                           <  1:1982287/98‑1 (MQ=255)

                                        taatCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTACTTTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGcc                                                         <  2:1274308/100‑1 (MQ=255)

                                        taatCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTACTTTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGcc                                                         <  1:1769697/100‑1 (MQ=255)

                                        taatCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGcc                                                         <  1:1481528/99‑1 (MQ=255)

                                          atCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTACTTTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGa                                                       <  1:1940546/100‑1 (MQ=255)

                                          atCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTACTTTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGa                                                       >  2:1403241/1‑100 (MQ=255)

                                          atCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGAt                                                      >  2:65370/1‑100 (MQ=255)

                                           tCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTACTTTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGAt                                                      <  2:1993797/100‑1 (MQ=255)

                                           tCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATc                                                     <  2:2456005/100‑1 (MQ=255)

                                           tCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATc                                                     <  2:937315/100‑1 (MQ=255)

                                            ccACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTACTTTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATc                                                     <  2:2427565/100‑1 (MQ=255)

                                             cACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCaa                                                   >  1:1031972/1‑100 (MQ=255)

                                              cttccgatctCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCaaa                                                  <  2:1775979/91‑1 (MQ=255)

                                              aagcaaCAAGACCACCGACTGGCCACATGGTTTCCCATGAACATTTTTTGACTTTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCAATCa                                                    <  1:312423/95‑1 (MQ=255)

                                               cGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAAt                                                 >  2:1995350/1‑100 (MQ=255)

                                               cGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAAt                                                 >  1:60289/1‑100 (MQ=255)

                                                gAAACATTCCCCGCTAGTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCTTAAAAACAGGCTGCACTGGCCGCGCCGATCa                                                    <  1:2525409/96‑1 (MQ=255)

                                                 aaaCAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGc                                               <  2:1081318/100‑1 (MQ=255)

                                                 aaaCAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGc                                               <  2:664099/100‑1 (MQ=255)

                                                      aTCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCaaan                                          <  2:743692/100‑2 (MQ=255)

                                                      aTCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCaaaa                                          >  2:1767689/1‑100 (MQ=255)

                                                      aTCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCaaaa                                          >  2:269926/1‑100 (MQ=255)

                                                        cccACCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCaaaagatcggaag                                        >  1:1775970/1‑90 (MQ=255)

                                                           aCCGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATcc                                     <  1:552702/100‑1 (MQ=255)

                                                            ccGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATccc                                    <  2:2292869/100‑1 (MQ=255)

                                                             cGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATcccc                                   >  1:1918701/1‑100 (MQ=255)

                                                             cGACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATcccc                                   <  2:286869/100‑1 (MQ=255)

                                                              gACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCa                                  <  2:1149399/100‑1 (MQ=255)

                                                              gACTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCa                                  >  2:71691/1‑100 (MQ=255)

                                                               aCTGACCACATGGTTTCCCATGACCATTTTTTTACTTTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCa                                  <  2:1559063/100‑1 (MQ=255)

                                                               aCTGACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCAt                                 <  2:1048347/100‑1 (MQ=255)

                                                                  gACCACATGGTTTCCCATGACCATTTTTTTACTTTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCg                               >  1:1533938/1‑100 (MQ=255)

                                                                  gACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGt                              >  1:999076/1‑100 (MQ=255)

                                                                  gACCACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGt                              >  2:1318920/1‑100 (MQ=255)

                                                                    ccACATGGTTTCCCATGACCATTTTTTTACTTTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTa                             >  2:2547774/1‑100 (MQ=255)

                                                                    ccACATGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTaa                            <  1:612627/100‑1 (MQ=255)

                                                                    ccACATGGTTTCCCATGACCATTTTTTT‑TTTTTTTTTACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTaa                            >  1:2169429/1‑100 (MQ=255)

                                                                     cacaTGGTTTCCCATGACCATTTTTTTACTTTTTTTTTTTTTTCTTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTaa                            >  1:2055910/1‑100 (MQ=255)

                                                                      acaTGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAATGTAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATc                          >  1:1918873/1‑100 (MQ=255)

                                                                       caTGGTTTGCCATGACCATTTTTGTACTTTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGTTCAAATGCCAAAATATCCCCATCGTaa                            <  1:929230/98‑1 (MQ=255)

                                                                         tGGTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCTGCGCCGATCAAATGCCAAAATATCCCCATCGTAATcgcg                       >  1:2298373/1‑100 (MQ=255)

                                                                          ggTTTCCCATGACCATTTTTTTTTTTTTTT‑TACGGAGCGTAAAAACATGCTGCACTTTCCGCGCCGTTCAAATGCCAAAATATCCCCATCGTact                           >  1:1113202/1‑93 (MQ=255)

                                                                          ggTTTCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGt                      >  1:478549/1‑100 (MQ=255)

                                                                            tttCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTa                    >  1:2511631/1‑100 (MQ=255)

                                                                             ttCCCATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTAc                   <  2:1648675/100‑1 (MQ=255)

                                                                               cccATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTACTCGCGTTACTc                 >  1:480946/1‑100 (MQ=255)

                                                                                 cATGACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTACTCAt               <  2:1553831/100‑1 (MQ=255)

                                                                                    gACCATTTTTTTTTTTTTTTTTTTGGAGCGTAAAAACAGGCTGCACTTGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTACtcttct             >  1:2146309/1‑100 (MQ=255)

                                                                                    gACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTACTCAtctt            <  1:174239/100‑1 (MQ=255)

                                                                                    gACCATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTACTCAtctt            <  2:486959/100‑1 (MQ=255)

                                                                                     aCCATTTTTTT‑TTTTTTTTTACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTACTCAtctt            >  1:1479034/1‑99 (MQ=255)

                                                                                      ccATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGTACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTACTCAtcttct          <  1:1112987/100‑1 (MQ=255)

                                                                                      ccATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAGATATCCCCATCGTAATCGCGTTACTCAtcttct          <  2:1176002/100‑1 (MQ=255)

                                                                                       cATTTTTTTAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTAGTCATcttctt         >  1:1701701/1‑100 (MQ=255)

                                                                                       cATTTTTTT‑TTTTTTTTAACGGAGCGGAAAACCAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTACTCATtttctt         >  1:1878829/1‑100 (MQ=255)

                                                                                        aTTTTTTTACTTTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTACTCAtcttct          <  1:2160092/99‑1 (MQ=255)

                                                                                         tttttttAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTACTCATCTTCTTAt       >  2:2091174/1‑100 (MQ=255)

                                                                                           tttttAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTACTCATCTTCTTATcc     >  2:1154185/1‑100 (MQ=255)

                                                                                           tttttAC‑TTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTACTCATCTTCTTATcc     >  1:1443401/1‑100 (MQ=255)

                                                                                               tACTTTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTACTCATCTTCTTATCCtca  <  1:1340047/100‑1 (MQ=255)

AAATTCGGTAGTAACAGGGCGCTGATGGCCCACGGCAGAATAATCCACGAAACAATCCCACCGACTGACCACATGGTTTCCCATGACCATTTTTTTACTTTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTACTCATCTTCTTATCCTCA  >  NC_000913/4100344‑4100538

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A