Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F125 I0 R1
|
65 |
108.6 |
5319566 |
96.1% |
5112102 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,572,318 |
T→C |
20.1% |
E395E (GAA→GAG) |
glgB ← |
1,4‑alpha‑glucan branching enzyme |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,572,318 | 0 | T | C | 20.1%
| 212.7
/ 47.8
| 104 | E395E (GAA→GAG) | glgB | 1,4‑alpha‑glucan branching enzyme |
| Reads supporting (aligned to +/- strand): ref base T (37/46); new base C (10/11); total (47/57) |
| Fisher's exact test for biased strand distribution p-value = 8.11e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 |
Only 100 of 108 total aligned reads displayed.
GCCAAATTCGTTCGGGATCCACTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGTTCCAGTCCTGATGATAGCCTTCACG > NC_000913/3572219‑3572416
|
gccAAATTCGTTCGGGATCCACTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGt > 1:968961/1‑100 (MQ=255)
gccAAATTCGTTCGGGATCCACTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGt > 2:1912728/1‑100 (MQ=255)
ccAAATTCGTTCGGGATCCACTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGtt < 2:797718/100‑1 (MQ=255)
cAAATTCGTTCGGGATCCACTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGtt > 2:1711309/1‑99 (MQ=255)
cAAATTCGTTCGGGATCCACTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTc < 1:2083786/100‑1 (MQ=255)
cAAATTCGTTCGGGATCCACTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTc < 2:1914134/100‑1 (MQ=255)
cAAATTCGTTCGGGATCCACTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTc < 1:85408/100‑1 (MQ=255)
cAAATTCGTTCGGGATCCACTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGCTc < 2:1050942/100‑1 (MQ=255)
cAAATTCGTTCGGGATCCACTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGCTc < 2:728490/100‑1 (MQ=255)
ntcgttcgGGATCCACTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATc > 2:2585323/2‑100 (MQ=255)
tcgttcgGGATCCTCTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATcc < 1:1910072/100‑1 (MQ=255)
tcgttcgGGATCCACTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATcc < 2:1182162/100‑1 (MQ=255)
gttcgGGATCCACTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAg > 1:1557253/1‑100 (MQ=255)
gttcgGGATCCACTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAg > 1:64725/1‑100 (MQ=255)
gttcgGGATCCACTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAg < 2:2005107/100‑1 (MQ=255)
gttcgGGATCCACTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGCTCAATCCAg > 2:2010924/1‑100 (MQ=255)
ttcgGGATCCACTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGAAGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGt > 2:2055848/1‑100 (MQ=255)
cgGGATCCACTCCCCCTCTTTACGGCTGTATTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCACATCAATACCAAAACGTTCAATCCAGTaa > 1:1559371/1‑100 (MQ=255)
ggATCCACTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAg < 2:634988/100‑1 (MQ=255)
ggATCCACTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAg < 2:191904/100‑1 (MQ=255)
ggATCCACTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAg > 2:148126/1‑100 (MQ=255)
ggATCCACTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAg > 1:179747/1‑100 (MQ=255)
ccACTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGCTCAATCCAGTAAAGcgcg < 2:171555/100‑1 (MQ=255)
cACTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGt > 2:791013/1‑100 (MQ=255)
cACTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGCTCAATCCAGTAAAGCGCGt > 1:1179034/1‑100 (MQ=255)
cACTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGCTCAATCCAGTAAAGCGCGt > 1:759985/1‑100 (MQ=255)
cTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTa < 1:1770257/100‑1 (MQ=255)
cTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCACAGAACATAAATACCAAAACGTTCAATCCAGTAAAGCGCGTTa > 1:1042111/1‑100 (MQ=255)
tCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTAc < 2:936654/100‑1 (MQ=255)
ccccTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACcg > 2:551387/1‑100 (MQ=255)
ccccTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACcg > 1:1866725/1‑100 (MQ=255)
ccccTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACcg > 1:1894385/1‑100 (MQ=255)
cccTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACcga > 1:496684/1‑100 (MQ=255)
ccTCTTTACGGCTGTAGTCGCGATATATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGCTCAATCCAGTAAAGCGCGTTACcgac < 1:419208/100‑1 (MQ=255)
ccTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACcgac < 2:850006/100‑1 (MQ=255)
ctctTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACcgacg < 1:1965400/100‑1 (MQ=255)
tttACGGCTGTAGTCGGTTTGTAGTGTTGACGCCAACTCTTTGATGCGTATCGCTTCATTACCATTTCGTTCAATCCAGTAAAg < 2:1669010/84‑1 (MQ=255)
aCGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAg < 1:932225/100‑1 (MQ=255)
cGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGt < 2:1204615/100‑1 (MQ=255)
gCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGATACCGACGAGGAAGTTa > 2:1732719/1‑100 (MQ=255)
cTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGttgc < 1:1801637/100‑3 (MQ=255)
cTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTAc < 1:1804061/100‑1 (MQ=255)
tGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACt < 1:1895470/100‑1 (MQ=255)
aGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGAc < 1:184024/100‑1 (MQ=255)
gTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGCTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACt > 2:727211/1‑100 (MQ=255)
cgcgATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTc > 1:601229/1‑100 (MQ=255)
cgcgATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTc < 2:1248749/100‑1 (MQ=255)
cgcgATAAATCATTGACGCCACCCCATCGACGCGCAGCGCATCAATACCAAAACGCTCAATCCAATAAAAAGCGTTACCGACGAGGAAGTTACTGACTTc > 1:1417320/1‑100 (MQ=255)
gcgATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCa < 2:2187033/100‑1 (MQ=255)
cgATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCAc < 2:31072/100‑1 (MQ=255)
gATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACg > 1:2561803/1‑100 (MQ=255)
tAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGc < 1:1284173/100‑1 (MQ=255)
aTCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGAc < 1:1083082/100‑1 (MQ=255)
aTCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGAc < 1:2474879/100‑1 (MQ=255)
tccatGACGCAACCCCATCAACGCGCAGCGCATCAATACCAACAAACTCAATCCAGTCACGCGCGTTACCGTCCAGGAAGTTACTGACTTCACGGCGAcc < 2:486486/96‑1 (MQ=255)
aTTGACGCCACCGTATCGACGCGCAGCGGATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCAt < 1:2644915/100‑1 (MQ=255)
aTTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCAt > 1:235121/1‑100 (MQ=255)
aTTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCAt > 1:2400785/1‑100 (MQ=255)
aTTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCAt > 1:2432138/1‑100 (MQ=255)
ttGACGCCACCGCATCGTCGCGCAGTGCATCAATACCAAAACGCTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATa < 1:1301546/100‑1 (MQ=255)
ttGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGCTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATa < 2:1722084/100‑1 (MQ=255)
ttGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGCTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATa < 1:1153343/100‑1 (MQ=255)
gACGCCACCGCATCGACGCGCAGCGCATCAATATCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGt < 1:148127/100‑1 (MQ=255)
gACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGCTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGt < 2:1179023/100‑1 (MQ=255)
cGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGCAGTTACTGACTTCACGGCGACCATAGTTg > 2:2409615/1‑100 (MQ=255)
cGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTg < 2:2561773/100‑1 (MQ=255)
ccACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTa > 1:301210/1‑100 (MQ=255)
ccACCGCATCGACGCGCAGCGCATCAATACCAAAACGCTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTa < 2:1256628/100‑1 (MQ=255)
cACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAg < 1:2585354/100‑1 (MQ=255)
cACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAg < 2:1152473/100‑1 (MQ=255)
aatcttaTCGACTCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCTCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAg < 1:1887568/94‑1 (MQ=255)
aCCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGa > 2:1153005/1‑100 (MQ=255)
ccGCATCGTCGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAGGCGTGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGt < 2:959056/96‑1 (MQ=255)
naTCGACGCGCAGCGCATCAATACCAAAACGCTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAg > 2:2262479/2‑100 (MQ=255)
tCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCg < 1:791021/100‑1 (MQ=255)
cgcgCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGtt > 2:307328/1‑100 (MQ=255)
cagcgcaTCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGTTCCAg < 2:1583473/100‑1 (MQ=255)
cagcgcaTAAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGTTCCAg < 1:1183803/100‑1 (MQ=255)
agcgcaTCAATACCAAAACGCTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGTTCCAGt > 1:2277819/1‑100 (MQ=255)
gcgcaTCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGTTCCAGTc > 1:1388867/1‑100 (MQ=255)
cgcaTCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGTGCCAGTcc < 2:500050/100‑1 (MQ=255)
gcaTCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGTTCCAGTCCt < 2:601225/100‑1 (MQ=255)
aTCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGTTCCAGTCCtga < 2:327566/100‑1 (MQ=255)
aTCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGTTCCAGTCCtga < 2:235119/100‑1 (MQ=255)
aTCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGTTCCAGTCCtga < 2:2400755/100‑1 (MQ=255)
tCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGTTCCAGTCCtgat > 1:1126365/1‑100 (MQ=255)
cAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCGTAGTTGTAGATCAGCGTGTTCCAGTCCtgatg < 1:886601/100‑1 (MQ=255)
cAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGTTCCAGTCCtgatg > 2:266893/1‑100 (MQ=255)
aaTACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGTTCCAGTCCtgatga > 1:2269700/1‑100 (MQ=255)
aaTACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGTTCCAGTCCtgatga > 1:753454/1‑100 (MQ=255)
aaTACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGTTCCAGTCCtgatga > 1:671685/1‑100 (MQ=255)
aTACCAAAACGCTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGTTCCAGTCCTgatgat > 1:2067805/1‑100 (MQ=255)
tACCAAAACGCTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGTTCCAGTCCTGATGATa < 1:2275154/100‑1 (MQ=255)
aCCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGTTCCAGTCCTGATGATAg < 1:677349/100‑1 (MQ=255)
ccAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGTTCCAGTCCTGATGATAGc > 1:970475/1‑100 (MQ=255)
ccAAAACGCTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCAAAGATGTAGATCAGCGAGTTCCAGTCCTGATGATAGc > 1:871930/1‑100 (MQ=255)
cAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGTTCCAGTCCTGATGATAg > 2:1290226/1‑98 (MQ=255)
cAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGACGACCATAGTAGTAGATCAGCGTGTTCCAGTCCTGATGATAGcc > 1:2135461/1‑100 (MQ=255)
aaCGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGTTCCAGTCCTGATGATAGCCTTc < 2:968951/100‑1 (MQ=255)
gTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGTTCCAGTCCTGATGATAGCCTTCAcg > 1:960269/1‑100 (MQ=255)
|
GCCAAATTCGTTCGGGATCCACTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGTTCCAGTCCTGATGATAGCCTTCACG > NC_000913/3572219‑3572416
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
