Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F191 I0 R1
|
105 |
142.7 |
6924153 |
96.8% |
6702580 |
99.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,572,318 |
T→C |
30.6% |
E395E (GAA→GAG) |
glgB ← |
1,4‑alpha‑glucan branching enzyme |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,572,318 | 0 | T | C | 30.6%
| 216.5
/ 136.2
| 163 | E395E (GAA→GAG) | glgB | 1,4‑alpha‑glucan branching enzyme |
| Reads supporting (aligned to +/- strand): ref base T (53/60); new base C (28/22); total (81/82) |
| Fisher's exact test for biased strand distribution p-value = 3.11e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.02e-01 |
Only 100 of 163 total aligned reads displayed.
CAAATTCGTTCGGGATCCACTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGTTCCAGTCCTGATGATAGCCTTCACG > NC_000913/3572221‑3572416
|
naaTTCGTTCGGGATCCACTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGCTCa > 2:1889287/2‑100 (MQ=255)
aaaTTCGTTCGGGATCCACTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCa > 2:1731170/1‑100 (MQ=255)
aaaTTCGTTCGGGATCCACTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGCTCa < 1:625295/100‑1 (MQ=255)
aaTTCGTTCGGGATCCACTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGCTCaa > 2:2579939/1‑100 (MQ=255)
aTTCGTTCGGGATCCACTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAAt < 1:1132179/100‑1 (MQ=255)
aTTCGTTCGGGATCCACTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGCTCAAt < 2:3459520/100‑1 (MQ=255)
gttcgGGATCCACTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGCTCAATCCAg > 1:135789/1‑100 (MQ=255)
gttcgGGATCCACTCCCCCTCTTTACGGCTGGAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTCCAATCCAg < 1:3288022/100‑1 (MQ=255)
ttcgGGATCCACTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGCTCAATCCAGt < 1:3344526/100‑1 (MQ=255)
gggATCCACTCCCCCTCTTTACGGCTGTAGCCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGCTCAATCCAGTaa > 1:1378833/1‑99 (MQ=255)
gATCCACTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGCTCAATCCAGTAAAgc > 1:1514349/1‑100 (MQ=255)
aTCCACTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAgcg > 1:3414427/1‑100 (MQ=255)
aTCCACTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGCTCAATCCAGTAAAgcg > 1:2947499/1‑100 (MQ=255)
aTCCACTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAACACCAAAACGTTCAATCCAGTAAAgcg > 1:2419845/1‑100 (MQ=255)
ccACTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGcgcg < 2:1389572/100‑1 (MQ=255)
cACTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGt > 2:662903/1‑100 (MQ=255)
cACTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGt > 2:742774/1‑100 (MQ=255)
cACTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGt > 2:2313147/1‑100 (MQ=255)
cACTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGCTCAATCCAGTAAAGCGCGt > 2:640524/1‑100 (MQ=255)
aCTCCCCCTCTTTACGGCTGTATTCGCGATATATCATGGACGCCACCTCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGtt < 1:2331983/100‑1 (MQ=255)
aCTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGtt < 1:432008/100‑1 (MQ=255)
cTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTa > 2:2813037/1‑100 (MQ=255)
tCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTAc < 2:3048697/100‑1 (MQ=255)
cccccTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTAcc > 1:279684/1‑100 (MQ=255)
cccccTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGCTCAATCCAGTAAAGCGCGTTAcc < 2:2406923/100‑1 (MQ=255)
cccTCTTTACGGCTGTAGTCGCGATAAAGCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACcg > 1:2979459/1‑99 (MQ=255)
ccTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACcgac > 2:652213/1‑100 (MQ=255)
ctctTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACcgacg > 1:461242/1‑100 (MQ=255)
tctTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACcgacga < 2:766861/100‑1 (MQ=255)
ctTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAg < 2:851528/100‑1 (MQ=255)
ctTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAg < 2:3432328/100‑1 (MQ=255)
ctTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAg < 2:1362066/100‑1 (MQ=255)
ctTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGCTCAATCCAGTAAAGCGCGTTACCGACGAg < 1:3202717/100‑1 (MQ=255)
tttACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAgg < 1:339518/100‑1 (MQ=255)
aCGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAg < 2:3414453/100‑1 (MQ=255)
aCGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAg < 1:21051/100‑1 (MQ=255)
cGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGt < 2:2118671/100‑1 (MQ=255)
ggCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGa < 1:798431/96‑1 (MQ=255)
ggCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGtt < 2:1960794/100‑1 (MQ=255)
ggCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGCTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGtt < 2:33461/100‑1 (MQ=255)
gCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGCTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTa > 1:3079639/1‑100 (MQ=255)
cTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTAc < 1:1795335/100‑1 (MQ=255)
tAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAATCGCTGTACCGACGAGGATGTTACtta > 2:508167/1‑98 (MQ=255)
aGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCCGTAAAGCGCGTTACCGACGAGGAAGTTACTGAc > 2:2926156/1‑100 (MQ=255)
aGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGa < 2:3167628/99‑1 (MQ=255)
aGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGAc < 1:1700101/100‑1 (MQ=255)
aGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGAc > 1:546842/1‑100 (MQ=255)
gTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACt < 2:1646899/100‑1 (MQ=255)
gTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACt > 1:2379027/1‑100 (MQ=255)
tCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACtt > 1:1834024/1‑100 (MQ=255)
gcgATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCa > 2:232566/1‑100 (MQ=255)
gcgATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCAAGTAAAGCGAGTTACCGACGAGGAAGTTACTGACTTCa > 2:3050667/1‑100 (MQ=255)
gcgATAAATCATTGACGCCACCACATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCa > 2:1463128/1‑100 (MQ=255)
cgATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCAc < 2:461246/100‑1 (MQ=255)
aTAAATCATTGACGCCACCGCATCGACGAGCAGCGAATCAATACCAAAACGCTCAATCCAGTAAAGCGAGTTACCGACGAGGAAGTTACTGACTTCACgg > 1:3205460/1‑100 (MQ=255)
tAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGc < 2:2232521/100‑1 (MQ=255)
tAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGc > 1:2979530/1‑100 (MQ=255)
tAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGCTCAATCCAGTAGAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGc < 2:2486403/100‑1 (MQ=255)
aaaTCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCg < 2:2602198/100‑1 (MQ=255)
aTCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCTCGGCGAc < 2:1818191/100‑1 (MQ=255)
aTCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGAc > 2:13388/1‑100 (MQ=255)
aTCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGAc > 1:2230340/1‑100 (MQ=255)
aTCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGAc < 2:3352668/100‑1 (MQ=255)
ttGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATa > 2:1216346/1‑100 (MQ=255)
ttGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATa < 1:2492236/100‑1 (MQ=255)
aCGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGtt < 1:744196/100‑1 (MQ=255)
cGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGCTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTg > 2:2456095/1‑100 (MQ=255)
ccACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTgaa > 2:2068971/1‑98 (MQ=255)
ccACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTa > 2:1447752/1‑100 (MQ=255)
cACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAg > 2:3062009/1‑100 (MQ=255)
ccGCGTCGACGCGCAGTGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGAt < 1:2025754/100‑1 (MQ=255)
ccGCATCGACGCGCAGCGCATCAATACCAAAACGCTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGAt < 1:640520/100‑1 (MQ=255)
cGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATc > 2:3289126/1‑100 (MQ=255)
gCATCGACGCGCAGCGCATCAATACCAAAACGCTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCa > 1:1943323/1‑100 (MQ=255)
cATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAg > 2:2851846/1‑100 (MQ=255)
aTCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGc > 1:2595875/1‑100 (MQ=255)
tCGACGCGCAGCGCATCAATACCAAAACGCTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGcn < 1:1889271/100‑2 (MQ=255)
cGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCgt > 1:1014179/1‑100 (MQ=255)
aCGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCgtgt < 1:1199507/100‑1 (MQ=255)
cgcgCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGtt < 2:102171/100‑1 (MQ=255)
cgcgCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGtt > 2:1231483/1‑100 (MQ=255)
agcgcaTCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGTTCCAg < 1:2926703/99‑1 (MQ=255)
cgcaTCAATACCAAAACGCTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGTTCCAGTcc < 1:184229/100‑1 (MQ=255)
cacaTCAATACCAAAACGCTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGTTCCAGTcc < 1:1632411/98‑1 (MQ=255)
gcaTCAATACCAAAACGCTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGTTCCAGTCCt > 1:3212597/1‑100 (MQ=255)
tCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGTTCCAGTCCtgat > 2:759874/1‑100 (MQ=255)
tCAATACCAAAACGCTCAATCTAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGTTCCAGTCCtgat > 1:1087642/1‑100 (MQ=255)
tCAATACCAAAACGCTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGTTCCAGTCCtgat > 1:531065/1‑100 (MQ=255)
cAATACCAAAACGCTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGTTCCAGTCCtgatg < 1:456179/100‑1 (MQ=255)
cAATACCAAAACGCTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGTTCCAGTCCtgatg > 1:2622642/1‑100 (MQ=255)
aTACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGTTCCAGTCCTgatgat < 1:819735/100‑1 (MQ=255)
tACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGTTCCAGTCCTGATGATa < 1:2159897/100‑1 (MQ=255)
aCCAAAACGCTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGTTCCAGTCCTGATGATAg > 1:2653209/1‑100 (MQ=255)
ccAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGTTCCAGTCCTGATGATAGc > 1:1305838/1‑100 (MQ=255)
cAAAACGCTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGTTCCAGTCCTGATGATAGcc < 2:2155842/100‑1 (MQ=255)
aaaaCGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGTTCCAGTCCTGATGATAGCCt < 1:2313129/100‑1 (MQ=255)
aaaaCGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGTTCCAGTCCTGATGATAGCCt > 1:1302989/1‑100 (MQ=255)
aaaCGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTATAGATCAGCGTGTTCCAGTCCTGATGATAAcc > 1:1034313/1‑98 (MQ=255)
aCGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGTTCCAGTCCTGATGATAGCCTTCa < 1:652209/100‑1 (MQ=255)
gTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGTTCCAGTCCTGATGATAGCCTTCAcg > 2:2633575/1‑100 (MQ=255)
|
CAAATTCGTTCGGGATCCACTCCCCCTCTTTACGGCTGTAGTCGCGATAAATCATTGACGCCACCGCATCGACGCGCAGCGCATCAATACCAAAACGTTCAATCCAGTAAAGCGCGTTACCGACGAGGAAGTTACTGACTTCACGGCGACCATAGTTGTAGATCAGCGTGTTCCAGTCCTGATGATAGCCTTCACG > NC_000913/3572221‑3572416
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
