Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F183 I1 R1	63	136.1	6714777	94.6%	6352179	99.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	460,106	A→T	I407F (ATC→TTC)	lon →	DNA‑binding ATP‑dependent protease La

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	460,106	0	A	T	96.4%	377.8 / 3.2	112	I407F (ATC→TTC)	lon	DNA‑binding ATP‑dependent protease La
Reads supporting (aligned to +/- strand): ref base A (2/2); new base T (48/60); total (50/62)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.66e-01

Only 100 of 112 total aligned reads displayed.

GCGTAAATATGTCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCGTGGCGATCCGGCCTCT  >  NC_000913/460009‑460201

 cGTAAATATGTCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTcc                                                                                              <  1:821123/100‑1 (MQ=255)

  gTAAATATGTCCGTATGGCGCTGGGCGGCGTGCGTGTTGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCa                                                                                             <  2:723878/100‑1 (MQ=255)

  gTAAATATGTCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCa                                                                                             <  2:282496/100‑1 (MQ=255)

  gTAAATATGTCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCa                                                                                             <  1:1787028/100‑1 (MQ=255)

   tAAATATGTCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAg                                                                                            <  1:661450/100‑1 (MQ=255)

   tAAATATGTCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAg                                                                                            >  1:2656555/1‑100 (MQ=255)

   tAAATATGTCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGATCCAg                                                                                            >  1:2185891/1‑100 (MQ=255)

      atatGTCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGaaa                                                                                         <  2:3295724/100‑1 (MQ=255)

       tatGTCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCTGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGaaaa                                                                                        <  2:651037/100‑1 (MQ=255)

          gTCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATgg                                                                                     >  2:2310192/1‑100 (MQ=255)

          gTCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATgg                                                                                     >  1:3243329/1‑100 (MQ=255)

          gTCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATgg                                                                                     >  2:2118822/1‑100 (MQ=255)

          gTCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATgg                                                                                     >  1:1515583/1‑100 (MQ=255)

          gTCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATgg                                                                                     <  2:128514/100‑1 (MQ=255)

          gTCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATgg                                                                                     <  2:647660/100‑1 (MQ=255)

           tCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGc                                                                                    <  2:122588/100‑1 (MQ=255)

           tCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGc                                                                                    <  1:2980086/100‑1 (MQ=255)

            ccGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCg                                                                                   >  2:2290444/1‑100 (MQ=255)

            ccGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCg                                                                                   >  2:2169028/1‑100 (MQ=255)

              gTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGaa                                                                                 >  2:1945180/1‑100 (MQ=255)

                  ggCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTg                                                                             <  1:1917411/100‑1 (MQ=255)

                  ggCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTg                                                                             <  1:1917193/100‑1 (MQ=255)

                   gcgcTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTgg                                                                            <  2:666721/100‑1 (MQ=255)

                   gcgcTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGAGTAAACTGTTCCAGAAAATGGCGAAAGTgg                                                                            <  2:3060958/100‑1 (MQ=255)

                      cTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCg                                                                         <  1:951854/100‑1 (MQ=255)

                         ggcggcGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGa                                                                      <  1:2760417/100‑1 (MQ=255)

                          gcggcgTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGaa                                                                     <  1:3319597/100‑1 (MQ=255)

                          gcggcgTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTAGGCCGGGTAATCTGTTCCAGAAAATGGCGAAAGTGGGCGTGaa                                                                     >  2:2360697/1‑100 (MQ=255)

                            ggcgTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGaaaa                                                                   <  1:252596/100‑1 (MQ=255)

                             gcgtgcgtGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGaaaaa                                                                  <  1:122961/100‑1 (MQ=255)

                               gtgcgtgATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAAcc                                                                <  1:825758/100‑1 (MQ=255)

                                tgcgtgATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAAccc                                                               >  2:1998362/1‑100 (MQ=255)

                                 ncgtgATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCg                                                              >  2:2262995/2‑100 (MQ=255)

                                 gcgtgATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCg                                                              <  1:3106479/100‑1 (MQ=255)

                                 gcgtgATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATACCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCg                                                              >  1:2056371/1‑100 (MQ=255)

                                  cgtgATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGc                                                             >  2:2227522/1‑100 (MQ=255)

                                  cgtgATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGc                                                             >  2:1470891/1‑100 (MQ=255)

                                  cgtgATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGc                                                             <  2:1114219/100‑1 (MQ=255)

                                      atgaAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGtt                                                         >  2:569883/1‑100 (MQ=255)

                                      atgaAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGtt                                                         <  2:844282/100‑1 (MQ=255)

                                      atgaAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGtt                                                         >  2:852696/1‑100 (MQ=255)

                                       tgaAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTc                                                        >  1:1459947/1‑100 (MQ=255)

                                        gaAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTcc                                                       >  1:1640564/1‑100 (MQ=255)

                                         aaGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCt                                                      <  2:1404180/100‑1 (MQ=255)

                                          ggCGGAAATCCGAGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTg                                                     >  1:3338446/2‑100 (MQ=255)

                                          aGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTg                                                     >  2:168980/1‑100 (MQ=255)

                                          aGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTg                                                     <  1:2442950/100‑1 (MQ=255)

                                          aGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCCCTGTTc                                                        >  1:3029430/1‑97 (MQ=255)

                                           gCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGc                                                    >  1:1257696/1‑100 (MQ=255)

                                           gCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGc                                                    <  2:1822493/100‑1 (MQ=255)

                                           gCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGc                                                    <  2:1843401/100‑1 (MQ=255)

                                            cGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCt                                                   <  1:3064433/100‑1 (MQ=255)

                                             ggAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTc                                                  >  1:1662321/1‑100 (MQ=255)

                                             ggAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTc                                                  <  2:723295/100‑1 (MQ=255)

                                                aaTCCGTGGTCACCGCCATACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGAt                                               <  2:4247/100‑1 (MQ=255)

                                                 aTCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATg                                              <  1:2329216/100‑1 (MQ=255)

                                                 aTCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATg                                              <  2:2656543/100‑1 (MQ=255)

                                                  tCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATga                                             <  2:2185880/100‑1 (MQ=255)

                                                    cGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCCCGATga                                             >  2:775575/1‑98 (MQ=255)

                                                     gTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGAt                                          >  1:586043/1‑100 (MQ=255)

                                                     gTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGAt                                          >  2:2229950/1‑100 (MQ=255)

                                                      tGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATc                                         <  2:2044659/100‑1 (MQ=255)

                                                       ggTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCGTGCTCGATGAGATCg                                        >  1:3297948/1‑100 (MQ=255)

                                                        gTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGa                                       >  1:2496791/1‑100 (MQ=255)

                                                          cACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACa                                     >  2:1441790/1‑100 (MQ=255)

                                                           aCCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACaa                                    <  2:1171679/100‑1 (MQ=255)

                                                             cgccgTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACaaaa                                  <  1:874218/100‑1 (MQ=255)

                                                             cgccgTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACaaaa                                  <  2:3338427/100‑1 (MQ=255)

                                                              gccgTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACaaa                                   >  2:3141959/1‑98 (MQ=255)

                                                              gccgTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAAt                                 >  1:934888/1‑100 (MQ=255)

                                                              gccgTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAAt                                 >  2:335822/1‑100 (MQ=255)

                                                               ccgTACTTACATCGGTTCTATGCCGGGTAATCTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATg                                <  1:2360708/100‑1 (MQ=255)

                                                               ccgTACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATg                                <  1:769488/100‑1 (MQ=255)

                                                                  tACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGtct                             >  1:940638/1‑100 (MQ=255)

                                                                  tACTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGtct                             <  1:569884/100‑1 (MQ=255)

                                                                  tACTTACATCGGTTCTATGCCGAGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATg                                >  2:1945876/1‑97 (MQ=255)

                                                                    cTTACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGtcttc                           <  2:1559090/100‑1 (MQ=255)

                                                                     ttACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGtcttct                          <  1:601383/100‑1 (MQ=255)

                                                                      tacggcGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTg                         >  2:2461544/6‑100 (MQ=255)

                                                                      tACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTg                         >  1:1793884/1‑100 (MQ=255)

                                                                      tACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTg                         <  1:2118832/100‑1 (MQ=255)

                                                                      tACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTg                         >  2:1825341/1‑100 (MQ=255)

                                                                      tACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTg                         <  1:538467/100‑1 (MQ=255)

                                                                      tACATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTg                         <  1:2121777/100‑1 (MQ=255)

                                                                       aCATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGa                        <  1:2239745/100‑1 (MQ=255)

                                                                        cATCGGTTCTATGCCGGGTAAACTGTTCCAGAAATTGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGAc                       <  2:1773201/100‑1 (MQ=255)

                                                                        cATCGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTgcc                       >  2:1661572/1‑98 (MQ=255)

                                                                           cGGTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATg                    <  1:2699811/100‑1 (MQ=255)

                                                                            ggTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGc                   >  1:2130712/1‑100 (MQ=255)

                                                                             gTTCTATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCg                  <  1:404968/100‑1 (MQ=255)

                                                                                 tATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCGTgg               >  2:477131/1‑99 (MQ=255)

                                                                                 tATGCCGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCGTGGc              <  2:53142/100‑1 (MQ=255)

                                                                                     ccGGGTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCGTGGCGATc          >  2:2598415/1‑100 (MQ=255)

                                                                                      cGGTTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCGTGGCGATcc         <  2:1459943/100‑1 (MQ=255)

                                                                                         gTAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTGCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCGTGGCGATCCgg       <  2:3120750/99‑1 (MQ=255)

                                                                                          tAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCGTGGCGATCCGGcc     <  2:627469/100‑1 (MQ=255)

                                                                                          tAAACTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCGTGGCGATCCGGcc     <  1:168981/100‑1 (MQ=255)

                                                                                            aaCTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCGTGGCGATCCGGCctc   >  2:1076157/1‑100 (MQ=255)

                                                                                            aaCTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCGTGGCGATCCGGCctc   >  2:2120340/1‑100 (MQ=255)

                                                                                             aCTGTTCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCGTGGCGATCCGGCctct  <  2:1901368/100‑1 (MQ=255)

GCGTAAATATGTCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCGTGGCGATCCGGCCTCT  >  NC_000913/460009‑460201

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A