Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F183 I1 R1 63 136.1 6714777 94.6% 6352179 99.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,277,706 (A)7→6 coding (370/465 nt) yhaV → toxin of the SohB(PrlF)‑YhaV toxin‑antitoxin system

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,277,7000A.98.5% 579.0 / 1.3 129coding (364/465 nt)yhaVtoxin of the SohB(PrlF)‑YhaV toxin‑antitoxin system
Reads supporting (aligned to +/- strand):  ref base A (1/1);  new base . (74/53);  total (75/54)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.32e-01

Only 100 of 153 total aligned reads displayed.

GTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATT  >  NC_000913/3277602‑3277799
                                                                                                  |                                                                                                   
gTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTaa                                                                                                    >  1:14556/1‑100 (MQ=255)
 tGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTaaa                                                                                                   >  1:1006554/1‑100 (MQ=255)
 tGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTaaa                                                                                                   >  1:649897/1‑100 (MQ=255)
  gCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTaaaa                                                                                                  >  1:2482147/1‑100 (MQ=255)
  gCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTaaaa                                                                                                  >  2:288913/1‑100 (MQ=255)
  gCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTaaaa                                                                                                  >  1:154294/1‑100 (MQ=255)
  gCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTaaaa                                                                                                  >  1:154370/1‑100 (MQ=255)
   cTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTaaaaa                                                                                                 <  2:3118887/100‑1 (MQ=255)
     ggTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTTTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTaaaaaa                                                                                                >  1:2619922/1‑99 (MQ=255)
     ggTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTaaaaaac                                                                                               <  2:2748907/100‑2 (MQ=255)
      gTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTaaaaaaca                                                                                              <  1:1898257/100‑3 (MQ=255)
      gTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTaaaaaaca                                                                                              <  1:730923/100‑3 (MQ=255)
      gTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTaaaaaaca                                                                                              <  2:2472394/100‑3 (MQ=255)
      gTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTaaaaaaca                                                                                              <  1:12819/100‑3 (MQ=255)
       tCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTaaaaaacag                                                                                             <  1:3277425/100‑4 (MQ=255)
       tCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTaaaaaacag                                                                                             >  2:1660503/1‑97 (MQ=255)
       tCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTaaaaaacag                                                                                             <  2:2489076/100‑4 (MQ=255)
       tCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTaaaaaacag                                                                                             <  2:64321/100‑4 (MQ=255)
        cGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTaaaaaacaga                                                                                            <  2:892066/100‑5 (MQ=255)
           tATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGc                                                                                        >  1:683498/1‑100 (MQ=255)
           tATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGc                                                                                        >  1:2224099/1‑100 (MQ=255)
            aTCGTCTCTTCTTTCGTTAGAGGGAAAAAGAGAAAGTCATCATGCTGGGATGGATGAACGATGAAAAGACTCTGCGCACCTAGGGTaaaaaacag                                                                                             <  2:2639695/95‑4 (MQ=255)
             tCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCt                                                                                      >  1:2709301/1‑100 (MQ=255)
              cGTCTCTTCTTTCGTTATAGTGAAAAAGCGAAAGTCATCATTCTGGTATGGATGAACGATGAAAATACTCTGCGCACCTACGGT‑AGAAACCAGATGCCt                                                                                      >  2:3038077/1‑99 (MQ=255)
               gTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCtat                                                                                    >  1:2847213/1‑100 (MQ=255)
               gTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCtat                                                                                    <  1:2781648/100‑1 (MQ=255)
                  tcttctTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATAcc                                                                                 <  2:1568020/100‑1 (MQ=255)
                   cttcttTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCg                                                                                <  1:1126316/100‑1 (MQ=255)
                      cttTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTAt                                                                             >  1:2302447/1‑100 (MQ=255)
                          cGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAg                                                                         <  2:77329/100‑1 (MQ=255)
                          cGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAg                                                                         <  2:3216345/100‑1 (MQ=255)
                           gTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGc                                                                        >  2:3277042/1‑100 (MQ=255)
                             tataGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTTCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCaa                                                                      <  2:3339187/100‑1 (MQ=255)
                             tataGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCATCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCaa                                                                      <  2:2077876/100‑1 (MQ=255)
                               taGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCaaaa                                                                    <  1:2881280/100‑1 (MQ=255)
                               taGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCaaaa                                                                    >  2:2430550/1‑100 (MQ=255)
                                 gTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAAGACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCaaaacg                                                                  >  2:1035319/1‑98 (MQ=255)
                                 gTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAAt                                                                   >  2:662552/1‑99 (MQ=255)
                                 gTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATg                                                                  >  2:2217612/1‑100 (MQ=255)
                                  tGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGt                                                                 >  2:61512/1‑100 (MQ=255)
                                   gAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGtt                                                                <  1:2695248/100‑1 (MQ=255)
                                   gAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGtt                                                                >  2:1008113/1‑100 (MQ=255)
                                    aaaaaGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTa                                                               >  1:2169241/1‑100 (MQ=255)
                                    aaaaaGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTa                                                               >  1:191290/1‑100 (MQ=255)
                                     aaaaGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTaa                                                              <  1:380155/100‑1 (MQ=255)
                                     aaaaGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTaa                                                              >  2:2795598/1‑100 (MQ=255)
                                      aaaGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTaaa                                                             >  1:3009238/1‑100 (MQ=255)
                                       aaGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTaaaa                                                            <  1:3288455/100‑1 (MQ=255)
                                        agagAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTaaaaa                                                           >  2:1472746/1‑100 (MQ=255)
                                         gagaAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAag                                                          >  2:3345822/1‑100 (MQ=255)
                                         gagaAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAag                                                          >  1:166467/1‑100 (MQ=255)
                                         gagaAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAag                                                          >  1:1012140/1‑100 (MQ=255)
                                          agaAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACAGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAaga                                                         <  2:649896/100‑1 (MQ=255)
                                            aaaGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAgg                                                       <  1:309628/100‑1 (MQ=255)
                                              aGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGAc                                                     >  2:3309914/1‑100 (MQ=255)
                                              aGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGAc                                                     <  1:2963870/100‑1 (MQ=255)
                                               gTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACa                                                    <  1:1660507/100‑1 (MQ=255)
                                                tcatcaTTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACAt                                                   >  2:157549/1‑100 (MQ=255)
                                                 catcatTCTGGGACGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACAtc                                                  >  1:341449/1‑100 (MQ=255)
                                                  atcatTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACAtcc                                                 >  2:447116/1‑100 (MQ=255)
                                                       tCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTg                                            >  1:1290341/1‑100 (MQ=255)
                                                        cTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGc                                           <  1:546896/100‑1 (MQ=255)
                                                         tcggatggatGAACGATGAAAACACTCTGCGAACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGcc                                          <  2:2038641/98‑1 (MQ=255)
                                                           ggatggatGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGa                                        >  2:1131517/1‑100 (MQ=255)
                                                            gatggatgAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGAc                                       <  1:860935/100‑1 (MQ=255)
                                                             atggatgAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAGCAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACt                                      <  2:2352197/100‑1 (MQ=255)
                                                              tggatgAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTg                                     >  1:290483/1‑100 (MQ=255)
                                                                gatgAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTggg                                   >  1:96908/1‑100 (MQ=255)
                                                                gatgAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTggg                                   >  1:2182142/1‑100 (MQ=255)
                                                                gatgAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTgg                                    >  2:678960/1‑99 (MQ=255)
                                                                 atgAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGa                                  >  2:1861580/1‑100 (MQ=255)
                                                                 atgAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGa                                  <  1:1904557/100‑1 (MQ=255)
                                                                   gAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGaan                                <  1:1267347/100‑2 (MQ=255)
                                                                    aaCGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAAc                               <  2:3181840/100‑1 (MQ=255)
                                                                    aaCGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAAc                               >  1:1761874/1‑100 (MQ=255)
                                                                    aaCGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAAc                               >  1:2334362/1‑100 (MQ=255)
                                                                     aCGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAAcc                              >  2:1492273/1‑100 (MQ=255)
                                                                     aCGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAAcc                              <  1:308056/100‑1 (MQ=255)
                                                                      cGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAAccc                             >  2:3102415/1‑100 (MQ=255)
                                                                      cGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAAccc                             >  1:380412/1‑100 (MQ=255)
                                                                      cGATGAAAACACTCTGCGAACCAACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAAccn                             <  2:2183428/100‑2 (MQ=255)
                                                                      cGATGAAAACACTCGGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAAccc                             >  1:624344/1‑100 (MQ=255)
                                                                       gATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCt                            >  2:3070252/1‑100 (MQ=255)
                                                                           aaaaCACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCAcc                        <  1:2218957/100‑1 (MQ=255)
                                                                           aaaaCACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCAcc                        >  2:1743676/1‑100 (MQ=255)
                                                                            aaaCACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCAccc                       >  1:1754965/1‑100 (MQ=255)
                                                                               cacTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCgag                    <  1:1008115/100‑1 (MQ=255)
                                                                                acTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCgaga                   <  1:447117/100‑1 (MQ=255)
                                                                                acTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCgaga                   <  1:2986598/100‑1 (MQ=255)
                                                                                 ctctGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGaa                  <  2:2302436/100‑1 (MQ=255)
                                                                                  tctGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGaaa                 <  2:2334351/100‑1 (MQ=255)
                                                                                   ctGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAAc                <  2:191289/100‑1 (MQ=255)
                                                                                       gcACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACagaa            >  1:2527619/1‑100 (MQ=255)
                                                                                        cACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACagaag           <  2:290482/100‑1 (MQ=255)
                                                                                            tACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAAc       >  2:3040738/1‑100 (MQ=255)
                                                                                            tACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAAc       >  1:2498497/1‑100 (MQ=255)
                                                                                            tACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAAc       >  2:906658/1‑100 (MQ=255)
                                                                                             aCGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAAcc      <  2:380411/100‑1 (MQ=255)
                                                                                             aCGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAAcc      >  2:602620/1‑100 (MQ=255)
                                                                                             aCGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAAcc      >  1:335467/1‑100 (MQ=255)
                                                                                                  |                                                                                                   
GTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATT  >  NC_000913/3277602‑3277799

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A