Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F110 I1 R1 51 90.5 4460762 96.5% 4304635 99.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,277,706 (A)7→6 coding (370/465 nt) yhaV → toxin of the SohB(PrlF)‑YhaV toxin‑antitoxin system

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,277,7000A.99.0% 448.6 / ‑2.1 97coding (364/465 nt)yhaVtoxin of the SohB(PrlF)‑YhaV toxin‑antitoxin system
Reads supporting (aligned to +/- strand):  ref base A (0/1);  new base . (48/48);  total (48/49)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.18e-01

Only 100 of 109 total aligned reads displayed.

GGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACC  >  NC_000913/3277601‑3277795
                                                                                                   |                                                                                               
ggTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTa                                                                                                 <  1:1001869/100‑1 (MQ=255)
 gTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTaa                                                                                                >  2:1259451/1‑100 (MQ=255)
  tGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTaaa                                                                                               >  2:1830503/1‑100 (MQ=255)
   gCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTaaaa                                                                                              >  2:503984/1‑100 (MQ=255)
    cTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTaaaaa                                                                                             <  2:52198/100‑1 (MQ=255)
    cTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTaaaaa                                                                                             <  2:2010064/100‑1 (MQ=255)
     tGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTaaaaaa                                                                                            >  1:324264/1‑100 (MQ=255)
       gTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTaaaaaaca                                                                                          <  2:1734281/100‑3 (MQ=255)
        tCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTaaaaaacag                                                                                         <  1:1018714/100‑4 (MQ=255)
        tCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTaaaaaacag                                                                                         <  1:2106015/100‑4 (MQ=255)
         cGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTaaaaaacaga                                                                                        <  2:2171162/100‑5 (MQ=255)
             aTCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGcc                                                                                   <  2:1773271/100‑1 (MQ=255)
              tCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGcc                                                                                   <  1:2203370/99‑1 (MQ=255)
               cGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCta                                                                                 >  1:77720/1‑100 (MQ=255)
               cGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCta                                                                                 <  1:532565/100‑1 (MQ=255)
               cGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCta                                                                                 >  2:1441850/1‑100 (MQ=255)
                gTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAGCACTCTGCGCACCTACGGT‑AAAAAACAGATGCCtat                                                                                >  2:1560243/1‑100 (MQ=255)
                 tctcTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCtata                                                                               >  1:459241/1‑100 (MQ=255)
                 tctcTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCtata                                                                               <  1:2085126/100‑1 (MQ=255)
                  ctctTCTTTCGTTAAAGTGAAAAAAAGAAAGTAATCATTCTGAGATAGATGAACGATGAAAACACTATGCGCACCTACGGT‑AAAAAACAGATGCCTATAc                                                                              <  1:456200/100‑1 (MQ=255)
                   tcttctTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATAcc                                                                             >  2:507113/1‑100 (MQ=255)
                    cttcttTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCg                                                                            <  1:1148427/100‑1 (MQ=255)
                      tcttTCGTTATAGTGAAAAAGAGAAACTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGt                                                                           >  1:841758/1‑99 (MQ=255)
                         ttCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTc                                                                       <  2:1155785/100‑1 (MQ=255)
                         ttCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTc                                                                       <  1:328404/100‑1 (MQ=255)
                         ttCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTc                                                                       <  2:1951609/100‑1 (MQ=255)
                          tCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCa                                                                      <  2:1792823/100‑1 (MQ=255)
                           cGTTATAGTGATAAAGAGAAAGACATCATCCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAg                                                                     >  1:718702/1‑100 (MQ=255)
                           cGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAg                                                                     <  2:1473124/100‑1 (MQ=255)
                             ttATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCa                                                                   <  2:1516888/100‑1 (MQ=255)
                               ataGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCaaa                                                                 >  1:2224068/1‑100 (MQ=255)
                               ataGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCaaa                                                                 >  2:1397172/1‑100 (MQ=255)
                                taGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCaaaa                                                                >  2:2115638/1‑100 (MQ=255)
                                taGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCaaaa                                                                >  1:289808/1‑100 (MQ=255)
                                taGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCaaaa                                                                >  1:1664815/1‑100 (MQ=255)
                                 aGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAAt                                                               <  1:852740/100‑1 (MQ=255)
                                  gTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCaaaa                                                                >  1:2006766/1‑98 (MQ=255)
                                  gTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATg                                                              >  2:1036336/1‑100 (MQ=255)
                                    gAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGtt                                                            >  2:1301494/1‑100 (MQ=255)
                                     aaaaaGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTa                                                           >  2:822022/1‑100 (MQ=255)
                                     aaaaaGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTa                                                           <  2:1752784/100‑1 (MQ=255)
                                      aaaaGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTaa                                                          >  2:1218379/1‑100 (MQ=255)
                                      aaaaGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGGATTCAGCAAAATGTTaa                                                          >  1:513224/1‑100 (MQ=255)
                                        aaGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTaaaa                                                        >  1:1095306/1‑100 (MQ=255)
                                        aaGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTaaaa                                                        <  2:775880/100‑1 (MQ=255)
                                        aaGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTaa                                                          <  1:892055/98‑1 (MQ=255)
                                           agaAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAaga                                                     <  2:877151/100‑1 (MQ=255)
                                            gaAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAagag                                                    <  2:315898/100‑1 (MQ=255)
                                             aaaGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAgg                                                   <  1:2025896/100‑1 (MQ=255)
                                              aaGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGa                                                  >  1:1544971/1‑100 (MQ=255)
                                                 tcatcaTTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACAt                                               >  2:604287/1‑100 (MQ=255)
                                                  catcatTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACAtc                                              >  1:1017505/1‑100 (MQ=255)
                                                  catcatTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATCTTAAAAAGAGGACAtc                                              >  1:1300822/1‑100 (MQ=255)
                                                   atcatTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACAAT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACAtcc                                             <  1:1036335/100‑1 (MQ=255)
                                                    tcatTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACAtcct                                            >  1:1259075/1‑100 (MQ=255)
                                                      atTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACAtcctcc                                          <  1:736922/100‑1 (MQ=255)
                                                      atTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACAtcctcc                                          >  2:1004957/1‑100 (MQ=255)
                                                        tCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTg                                        <  2:1431462/100‑1 (MQ=255)
                                                        tCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTg                                        <  1:507112/100‑1 (MQ=255)
                                                         cTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGc                                       >  2:307199/1‑100 (MQ=255)
                                                          tGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGcc                                      >  1:1637284/1‑100 (MQ=255)
                                                           gggATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCg                                     >  2:803625/1‑100 (MQ=255)
                                                           gggATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCg                                     <  1:310861/100‑1 (MQ=255)
                                                           gggATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCg                                     >  1:217152/1‑100 (MQ=255)
                                                           gggATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTACCg                                     >  1:448155/1‑100 (MQ=255)
                                                            ggatggatGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCg                                     <  1:401075/100‑1 (MQ=255)
                                                             aatggctgAACGATGAATACACTCTGCCCACCAACGGT‑AAAAAACAGAAGCCTATACCTTATTCAGCAAAATGTTAAAAAGAGGACATccacct                                         >  1:740626/2‑94 (MQ=255)
                                                               tggatgAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTg                                 >  2:509942/1‑100 (MQ=255)
                                                                ggatgAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTgg                                <  2:858261/100‑1 (MQ=255)
                                                                 gatgAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTggg                               >  1:1870724/1‑100 (MQ=255)
                                                                 gatgAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTggg                               <  2:501425/100‑1 (MQ=255)
                                                                 gatgAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTggg                               <  2:1446341/100‑1 (MQ=255)
                                                                 gatgAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTggg                               <  2:277917/100‑1 (MQ=255)
                                                                  atgAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGa                              >  1:704508/1‑100 (MQ=255)
                                                                   tgAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGaa                             >  1:1976986/1‑100 (MQ=255)
                                                                       cGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAAccc                         <  1:503983/100‑1 (MQ=255)
                                                                       cGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAAccc                         <  2:2162581/100‑1 (MQ=255)
                                                                       cGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGCTAAAAAGAGGACATCCTCCTGCCGACTGGGAAAccn                         <  2:1568120/100‑2 (MQ=255)
                                                                        gATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCt                        <  1:1304897/100‑1 (MQ=255)
                                                                         aTGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTc                       <  1:1408629/100‑1 (MQ=255)
                                                                          tGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCa                      >  2:38762/1‑100 (MQ=255)
                                                                            aaaaCACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCAcc                    <  1:1599713/100‑1 (MQ=255)
                                                                            aaaaCACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCAcc                    <  2:1259077/100‑1 (MQ=255)
                                                                            aaaaCACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCAcc                    <  2:459242/100‑1 (MQ=255)
                                                                            aaaaCACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCAcc                    >  1:1833314/1‑100 (MQ=255)
                                                                             aaaCACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCAccc                   <  1:1830493/100‑1 (MQ=255)
                                                                             aaaCACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCAccc                   >  1:618818/1‑100 (MQ=255)
                                                                                cacTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCACAACGTTAAAAAGAGCACATCCTCCTGCCGCCAGGGAAACACTCAccc                   >  1:1939727/1‑97 (MQ=255)
                                                                                cacTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCgag                <  2:406528/100‑1 (MQ=255)
                                                                                 acTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCgaga               >  2:1758689/1‑100 (MQ=255)
                                                                                  ctctGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGaa              <  1:176684/100‑1 (MQ=255)
                                                                                   tctGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGaaa             <  1:1560235/100‑1 (MQ=255)
                                                                                       cgcACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACaga         <  2:353713/100‑1 (MQ=255)
                                                                                       cgcACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACaga         >  2:1861634/1‑100 (MQ=255)
                                                                                         cACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACagaag       >  1:23892/1‑100 (MQ=255)
                                                                                         cACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACagaag       <  2:1578053/100‑1 (MQ=255)
                                                                                         cACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACagaag       <  1:803624/100‑1 (MQ=255)
                                                                                            cTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGaaa    <  2:1017506/100‑1 (MQ=255)
                                                                                             tACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAAc   >  1:190470/1‑100 (MQ=255)
                                                                                              aCGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAAcc  >  1:530432/1‑100 (MQ=255)
                                                                                                   |                                                                                               
GGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACC  >  NC_000913/3277601‑3277795

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A